Rmu_sc0005725.1_g000004

prefoldin subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005725.1
OG0003635
Physical Location & Seq
Reverse (-)
22092 .. 24122
2031 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 642 bp
atgtcctcatcttctctatcgatctcttctgtgtcttcaaaaaacccgattccttcgctcctccgccacacgccccaaacccaaagcattctcggaccccagcttcttcaacctcctttggtacttgccttcaacttggattattcgagtactgttgcaagcttcgattcactgccaattaccgcacacagagacggaagagtcatgtctagtagtaaagctgaagaacctgtaaatgagcaagcagttgcaaataagtttgctgccatgaggtctgaactcaaccaaatttactctaaaatcactgagctagagatggacgtgagtgagcactcattggtgatcaatgccatccagccactcgacccatccaggcggtgcttccgaatgattggaggtgtgctggtggagagaaccatcaaggaggtcctgcctgctgtgcagcgtaacaaagaagggattgaggaggttattactcggctgaatgaggctttggaaaggaagaaaaaagaaatttctgactttgaggccaagtacaagatccggataagaaagaacgacagtgaggagaaggatgatggtgctcgcaaagaaggaactgctcaaggagtcctggtcggccctgctggtggaagcgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0008150 GO:0009987 GO:0044183 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prefoldin_2

Protein Analysis

213

Amino Acids

23.46

Weight (kDa)

6.36

Isoelectric Point (pI)

58.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin_2 PF01920 81 - 185 4.8e-26 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 200
AccIII TCCGGA 1 cut(s) 543
AciI CCGC 3 cut(s) 64, 183, 376
AclWI GGATC 1 cut(s) 535
AcsI RAATTY 2 cut(s) 288, 513
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 3 cut(s) 123, 151, 536
AfiI CCNNNNNNNGG 1 cut(s) 629
AgsI TTSAA 3 cut(s) 39, 110, 133
AjiI CACGTC 1 cut(s) 322
AjnI CCWGG 2 cut(s) 371, 612
AjuI GAANNNNNNNTTGG 2 cut(s) 476, 508
AluBI AGCT 4 cut(s) 103, 162, 221, 310
AluI AGCT 4 cut(s) 103, 162, 221, 310
Alw21I GWGCWC 2 cut(s) 333, 586
Alw26I GTCTC 1 cut(s) 186
AlwI GGATC 1 cut(s) 535
Aor13HI TCCGGA 1 cut(s) 543
AoxI GGCC 2 cut(s) 528, 619
ApeKI GCWGC 2 cut(s) 263, 442
ApoI RAATTY 2 cut(s) 288, 513
AspS9I GGNCC 3 cut(s) 95, 427, 620
AsuHPI GGTGA 1 cut(s) 352
AvaII GGWCC 2 cut(s) 95, 427
BbsI GAAGAC 1 cut(s) 27
Bbv12I GWGCWC 2 cut(s) 333, 586
BbvI GCAGC 2 cut(s) 250, 454
BccI CCATC 5 cut(s) 310, 359, 376, 425, 572
BciT130I CCWGG 2 cut(s) 373, 614
BclI TGATCA 1 cut(s) 342
BcoDI GTCTC 1 cut(s) 186
BfaI CTAG 2 cut(s) 210, 311
BisI GCNGC 2 cut(s) 264, 443
BlsI GCNGC 2 cut(s) 265, 444
BmcAI AGTACT 1 cut(s) 151
Bme1390I CCNGG 2 cut(s) 373, 614
Bme18I GGWCC 2 cut(s) 95, 427
BmgBI CACGTC 1 cut(s) 322
BmgT120I GGNCC 3 cut(s) 95, 427, 620
BmiI GGNNCC 1 cut(s) 97
BmrFI CCNGG 2 cut(s) 373, 614
BpiI GAAGAC 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 588
Bsa29I ATCGAT 1 cut(s) 20
BsaWI WCCGGW 1 cut(s) 543
BsaXI ACNNNNNCTCC 2 cut(s) 600, 630
Bsc4I CCNNNNNNNGG 1 cut(s) 629
BseAI TCCGGA 1 cut(s) 543
BseBI CCWGG 2 cut(s) 373, 614
BseCI ATCGAT 1 cut(s) 20
BseGI GGATG 3 cut(s) 351, 368, 580
BseLI CCNNNNNNNGG 1 cut(s) 629
BseMII CTCAG 1 cut(s) 297
BseRI GAGGAG 3 cut(s) 50, 479, 581
BseXI GCAGC 2 cut(s) 250, 454
BseYI CCCAGC 1 cut(s) 99
BsgI GTGCAG 1 cut(s) 461
BshFI GGCC 2 cut(s) 530, 621
BshVI ATCGAT 1 cut(s) 20
BsiHKAI GWGCWC 2 cut(s) 333, 586
BsiSI CCGG 1 cut(s) 544
BslI CCNNNNNNNGG 1 cut(s) 629
BsmAI GTCTC 1 cut(s) 186
BsmBI CGTCTC 1 cut(s) 186
BsmI GAATGC 1 cut(s) 87
BsnI GGCC 2 cut(s) 530, 621
Bsp1286I GDGCHC 2 cut(s) 333, 586
Bsp13I TCCGGA 1 cut(s) 543
Bsp143I GATC 3 cut(s) 21, 342, 540
BspACI CCGC 3 cut(s) 64, 183, 376
BspANI GGCC 2 cut(s) 530, 621
BspCNI CTCAG 1 cut(s) 298
BspDI ATCGAT 1 cut(s) 20
BspEI TCCGGA 1 cut(s) 543
BspLI GGNNCC 1 cut(s) 97
BspPI GGATC 1 cut(s) 535
BssMI GATC 3 cut(s) 21, 342, 540
Bst2UI CCWGG 2 cut(s) 373, 614
Bst4CI ACNGT 2 cut(s) 154, 563
Bst6I CTCTTC 2 cut(s) 31, 193
BstC8I GCNNGC 4 cut(s) 160, 243, 435, 586
BstDEI CTNAG 1 cut(s) 306
BstF5I GGATG 3 cut(s) 351, 368, 580
BstKTI GATC 3 cut(s) 24, 345, 543
BstMAI GTCTC 1 cut(s) 186
BstMBI GATC 3 cut(s) 21, 342, 540
BstMWI GCNNNNNNNGC 1 cut(s) 439
BstNI CCWGG 2 cut(s) 373, 614
BstSCI CCNGG 2 cut(s) 371, 612
BstV1I GCAGC 2 cut(s) 250, 454
BstV2I GAAGAC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 540
BstYI RGATCY 1 cut(s) 540
Bsu15I ATCGAT 1 cut(s) 20
BsuRI GGCC 2 cut(s) 530, 621
BsuTUI ATCGAT 1 cut(s) 20
BtrI CACGTC 1 cut(s) 322
BtsCI GGATG 3 cut(s) 351, 368, 580
BtsI GCAGTG 1 cut(s) 170
BtsIMutI CAGTG 3 cut(s) 170, 303, 568
Cac8I GCNNGC 4 cut(s) 160, 243, 435, 586
Cfr13I GGNCC 3 cut(s) 95, 427, 620
ClaI ATCGAT 1 cut(s) 20
Csp6I GTAC 3 cut(s) 122, 150, 535
CviAII CATG 2 cut(s) 205, 268
CviJI RGCY 9 cut(s) 103, 162, 221, 310, 358, 481, 491, 530, 621
CviKI_1 RGCY 9 cut(s) 103, 162, 221, 310, 358, 481, 491, 530, 621
CviQI GTAC 3 cut(s) 122, 150, 535
DdeI CTNAG 1 cut(s) 306
DpnI GATC 3 cut(s) 23, 344, 542
DpnII GATC 3 cut(s) 21, 342, 540
DrdI GACNNNNNNGTC 1 cut(s) 200
DseDI GACNNNNNNGTC 1 cut(s) 200
Eam1104I CTCTTC 2 cut(s) 31, 193
EarI CTCTTC 2 cut(s) 31, 193
EciI GGCGGA 1 cut(s) 53
Eco47I GGWCC 2 cut(s) 95, 427
Eco57I CTGAAG 1 cut(s) 243
EcoO109I RGGNCCY 1 cut(s) 427
EcoRII CCWGG 2 cut(s) 371, 612
Esp3I CGTCTC 1 cut(s) 186
FaeI CATG 2 cut(s) 208, 271
FaiI YATR 2 cut(s) 206, 269
FatI CATG 2 cut(s) 204, 267
FbaI TGATCA 1 cut(s) 342
Fnu4HI GCNGC 2 cut(s) 264, 443
FokI GGATG 3 cut(s) 338, 355, 587
Fsp4HI GCNGC 2 cut(s) 264, 443
FspBI CTAG 2 cut(s) 210, 311
GluI GCNGC 2 cut(s) 264, 443
GsaI CCCAGC 1 cut(s) 103
HaeIII GGCC 2 cut(s) 530, 621
HapII CCGG 1 cut(s) 544
Hin1II CATG 2 cut(s) 208, 271
HindIII AAGCTT 1 cut(s) 160
HinfI GANTC 4 cut(s) 49, 167, 201, 609
HpaII CCGG 1 cut(s) 544
HphI GGTGA 1 cut(s) 352
Hpy188I TCNGA 4 cut(s) 95, 277, 386, 520
Hpy188III TCNNGA 1 cut(s) 544
HpyAV CCTTC 5 cut(s) 63, 139, 449, 565, 587
HpyCH4III ACNGT 2 cut(s) 154, 563
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 3 cut(s) 158, 251, 442
HpyF10VI GCNNNNNNNGC 1 cut(s) 439
HpyF3I CTNAG 1 cut(s) 306
HpySE526I ACGT 1 cut(s) 321
Hsp92II CATG 2 cut(s) 208, 271
Kpn2I TCCGGA 1 cut(s) 543
Ksp22I TGATCA 1 cut(s) 342
Kzo9I GATC 3 cut(s) 21, 342, 540
LmnI GCTCC 1 cut(s) 63
Lsp1109I GCAGC 2 cut(s) 250, 454
MaeI CTAG 2 cut(s) 210, 311
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 1 cut(s) 446
MalI GATC 3 cut(s) 23, 344, 542
MboI GATC 3 cut(s) 21, 342, 540
MboII GAAGA 7 cut(s) 3, 18, 27, 98, 210, 236, 514
MflI RGATCY 1 cut(s) 540
MhlI GDGCHC 2 cut(s) 333, 586
MluCI AATT 3 cut(s) 177, 288, 513
MlyI GAGTC 2 cut(s) 210, 618
MroI TCCGGA 1 cut(s) 543
MspI CCGG 1 cut(s) 544
MspR9I CCNGG 2 cut(s) 373, 614
Mva1269I GAATGC 1 cut(s) 87
MvaI CCWGG 2 cut(s) 373, 614
MwoI GCNNNNNNNGC 1 cut(s) 439
NdeII GATC 3 cut(s) 21, 342, 540
NlaIII CATG 2 cut(s) 208, 271
NlaIV GGNNCC 1 cut(s) 97
NmeAIII GCCGAG 1 cut(s) 457
PctI GAATGC 1 cut(s) 87
PfeI GAWTC 2 cut(s) 49, 167
PkrI GCNGC 2 cut(s) 265, 444
PleI GAGTC 2 cut(s) 209, 617
PpsI GAGTC 2 cut(s) 209, 617
PpuMI RGGWCCY 1 cut(s) 427
Psp5II RGGWCCY 1 cut(s) 427
Psp6I CCWGG 2 cut(s) 371, 612
PspFI CCCAGC 1 cut(s) 99
PspGI CCWGG 2 cut(s) 371, 612
PspN4I GGNNCC 1 cut(s) 97
PspPI GGNCC 3 cut(s) 95, 427, 620
PspPPI RGGWCCY 1 cut(s) 427
PsuI RGATCY 1 cut(s) 540
RsaI GTAC 3 cut(s) 123, 151, 536
RsaNI GTAC 3 cut(s) 122, 150, 535
SatI GCNGC 2 cut(s) 264, 443
Sau3AI GATC 3 cut(s) 21, 342, 540
Sau96I GGNCC 3 cut(s) 95, 427, 620
ScaI AGTACT 1 cut(s) 151
SchI GAGTC 2 cut(s) 210, 618
ScrFI CCNGG 2 cut(s) 373, 614
SduI GDGCHC 2 cut(s) 333, 586
SinI GGWCC 2 cut(s) 95, 427
SmlI CTYRAG 1 cut(s) 603
SmoI CTYRAG 1 cut(s) 603
Sse9I AATT 3 cut(s) 177, 288, 513
SsiI CCGC 3 cut(s) 64, 183, 376
SspMI CTAG 2 cut(s) 210, 311
StyD4I CCNGG 2 cut(s) 371, 612
TaaI ACNGT 2 cut(s) 154, 563
TaiI ACGT 1 cut(s) 324
TaqI TCGA 4 cut(s) 20, 146, 165, 363
TasI AATT 3 cut(s) 177, 288, 513
TatI WGTACW 2 cut(s) 149, 534
TfiI GAWTC 2 cut(s) 49, 167
TscAI CASTG 3 cut(s) 177, 310, 568
TseI GCWGC 2 cut(s) 263, 442
TspGWI ACGGA 1 cut(s) 210
TspRI CASTG 3 cut(s) 177, 310, 568
VpaK11BI GGWCC 2 cut(s) 95, 427
XapI RAATTY 2 cut(s) 288, 513
XspI CTAG 2 cut(s) 210, 311
ZrmI AGTACT 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.