Rmu_sc0005795.1_g000008

TPL-binding domain in jasmonate signalling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005795.1
OG0002230
Physical Location & Seq
Forward (+)
49444 .. 52577
3134 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1116 bp
atgggctgtgataattcttccagggtagaatcaaagcgtggtcacccatggtatatggatgccaatggaccagatctgttcaacaacaagaagcaagcaatggaggctgttgatggtaggccagcttcaagagcttcaaacttggccgttgccccgtcggataacacttctgggtttcagacagttccagggaagttcactgactgcctctttggacaagagcctggacggacagtcaacttagttgatagaaacattcagtctgttggcagtggaactactaattttggaagaaaagggtttcagaatcaatatggcagtgatcagtcaaacacagcagctcatgcatcagaagaatctggtgtgagagattctgatcatcctgatgagtcgaagatagatgcacatgtagatgacgctgtgaaagttgattccaaaactgttaatattcccaaagtaaaagagccaaagactaagaaagctccaccaaacaactttctttcgtattttccttgtgttgacttgttatatttttcacagaaaaacctagatggaattatcaaagggactgggtatctatgctcttatgctgactgcaatcactcaaagcgtcttaatgcttacgagtttgagcgccatgcttgtgccaagaccaaacatcccaataatcgcatctactttgagaatggaaagaccatccatgcagtagttgaagagctgaagaacactcctcaggacatgctctttgatgccatccaaaatgtgacagggtctcaggttaataagaagaactcccgcgtctggatagcatcattccaagccgccagcgtgaccttcagcgtggtctctctcaccgctttgatttgcttctggtgtatggtggaaggagcagtggtggctattgtggttgaaagggaaaattcagaagcatggtccatacacttcgacttcaagctgctcgcagctgtttatggggctcttctatcgggggctgtatattatgtcatggggctggttgtgatgaagaagggactagttttctactctgtctttaaccccttggccaccctgcttgtggcgattttgggatcattttttctggcagaacaattgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas

Protein Analysis

371

Amino Acids

40.8

Weight (kDa)

7.1

Isoelectric Point (pI)

27.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TDBD PF16135 185 - 239 2.2e-09 Tify domain binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 798
AciI CCGC 3 cut(s) 796, 822, 855
AclWI GGATC 1 cut(s) 1096
AcoI YGGCCR 2 cut(s) 144, 1062
AcsI RAATTY 1 cut(s) 919
AcuI CTGAAG 2 cut(s) 740, 820
AfiI CCNNNNNNNGG 2 cut(s) 801, 1075
AflIII ACRYGT 1 cut(s) 406
AgsI TTSAA 6 cut(s) 82, 129, 138, 713, 911, 952
AhdI GACNNNNNGTC 1 cut(s) 233
AhlI ACTAGT 1 cut(s) 1033
AjnI CCWGG 3 cut(s) 20, 187, 223
AluBI AGCT 7 cut(s) 125, 134, 341, 482, 718, 955, 965
AluI AGCT 7 cut(s) 125, 134, 341, 482, 718, 955, 965
Alw26I GTCTC 2 cut(s) 777, 850
AlwI GGATC 1 cut(s) 1096
AoxI GGCC 3 cut(s) 119, 144, 1062
ApeKI GCWGC 3 cut(s) 338, 955, 962
ApoI RAATTY 1 cut(s) 919
ArsI GACNNNNNNTTYG 4 cut(s) 194, 226, 728, 760
AspLEI GCGC 1 cut(s) 636
AspS9I GGNCC 2 cut(s) 68, 933
AsuHPI GGTGA 2 cut(s) 35, 844
AvaII GGWCC 2 cut(s) 68, 933
AxyI CCTNAGG 1 cut(s) 732
BalI TGGCCA 1 cut(s) 1064
BanII GRGCYC 1 cut(s) 979
BarI GAAGNNNNNNTAC 2 cut(s) 109, 141
BbvI GCAGC 3 cut(s) 350, 942, 974
BccI CCATC 4 cut(s) 107, 545, 704, 761
BceAI ACGGC 1 cut(s) 131
BciT130I CCWGG 3 cut(s) 22, 189, 225
BclI TGATCA 2 cut(s) 322, 376
BcoDI GTCTC 2 cut(s) 777, 850
BcuI ACTAGT 1 cut(s) 1033
BfaI CTAG 2 cut(s) 548, 1034
BfoI RGCGCY 1 cut(s) 637
BglII AGATCT 1 cut(s) 73
BisI GCNGC 4 cut(s) 339, 822, 956, 963
BlsI GCNGC 4 cut(s) 340, 823, 957, 964
Bme1390I CCNGG 3 cut(s) 22, 189, 225
Bme18I GGWCC 2 cut(s) 68, 933
BmeRI GACNNNNNGTC 1 cut(s) 233
BmgT120I GGNCC 2 cut(s) 68, 933
BmrFI CCNGG 3 cut(s) 22, 189, 225
BmrI ACTGGG 1 cut(s) 579
BmsI GCATC 6 cut(s) 49, 356, 391, 681, 739, 818
BmuI ACTGGG 1 cut(s) 579
BsaBI GATNNNNATC 1 cut(s) 375
BsaI GGTCTC 2 cut(s) 777, 850
BsaJI CCNNGG 4 cut(s) 21, 47, 188, 1059
BsaXI ACNNNNNCTCC 2 cut(s) 879, 909
Bsc4I CCNNNNNNNGG 2 cut(s) 801, 1075
Bse1I ACTGG 1 cut(s) 574
Bse21I CCTNAGG 1 cut(s) 732
Bse3DI GCAATG 1 cut(s) 105
Bse8I GATNNNNATC 1 cut(s) 375
BseBI CCWGG 3 cut(s) 22, 189, 225
BseDI CCNNGG 4 cut(s) 21, 47, 188, 1059
BseGI GGATG 5 cut(s) 64, 379, 658, 696, 753
BseJI GATNNNNATC 1 cut(s) 375
BseLI CCNNNNNNNGG 2 cut(s) 801, 1075
BseMI GCAATG 1 cut(s) 105
BseMII CTCAG 2 cut(s) 746, 788
BseNI ACTGG 1 cut(s) 574
BseRI GAGGAG 1 cut(s) 720
BseXI GCAGC 3 cut(s) 350, 942, 974
Bsh1236I CGCG 1 cut(s) 798
BshFI GGCC 3 cut(s) 121, 146, 1064
BslFI GGGAC 2 cut(s) 580, 1044
BslI CCNNNNNNNGG 2 cut(s) 801, 1075
BsmAI GTCTC 2 cut(s) 777, 850
BsmFI GGGAC 2 cut(s) 580, 1044
BsnI GGCC 3 cut(s) 121, 146, 1064
Bso31I GGTCTC 2 cut(s) 777, 850
Bsp1286I GDGCHC 1 cut(s) 979
Bsp143I GATC 4 cut(s) 73, 322, 376, 1088
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 3 cut(s) 796, 822, 855
BspANI GGCC 3 cut(s) 121, 146, 1064
BspCNI CTCAG 2 cut(s) 745, 787
BspFNI CGCG 1 cut(s) 798
BspPI GGATC 1 cut(s) 1096
BspQI GCTCTTC 2 cut(s) 708, 984
BspTNI GGTCTC 2 cut(s) 777, 850
BsrDI GCAATG 1 cut(s) 105
BsrI ACTGG 1 cut(s) 574
BssECI CCNNGG 4 cut(s) 21, 47, 188, 1059
BssMI GATC 4 cut(s) 73, 322, 376, 1088
BssT1I CCWWGG 2 cut(s) 47, 1059
Bst2UI CCWGG 3 cut(s) 22, 189, 225
Bst4CI ACNGT 3 cut(s) 184, 235, 442
Bst6I CTCTTC 2 cut(s) 708, 984
BstAPI GCANNNNNTGC 1 cut(s) 344
BstC8I GCNNGC 4 cut(s) 96, 123, 826, 960
BstDEI CTNAG 4 cut(s) 241, 474, 732, 774
BstDSI CCRYGG 1 cut(s) 47
BstEII GGTNACC 1 cut(s) 41
BstF5I GGATG 5 cut(s) 64, 379, 658, 696, 753
BstFNI CGCG 1 cut(s) 798
BstH2I RGCGCY 1 cut(s) 637
BstHHI GCGC 1 cut(s) 636
BstKTI GATC 4 cut(s) 76, 325, 379, 1091
BstMAI GTCTC 2 cut(s) 777, 850
BstMBI GATC 4 cut(s) 73, 322, 376, 1088
BstMWI GCNNNNNNNGC 4 cut(s) 104, 131, 344, 896
BstNI CCWGG 3 cut(s) 22, 189, 225
BstNSI RCATGY 2 cut(s) 410, 742
BstPI GGTNACC 1 cut(s) 41
BstSCI CCNGG 3 cut(s) 20, 187, 223
BstUI CGCG 1 cut(s) 798
BstV1I GCAGC 3 cut(s) 350, 942, 974
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
Bsu36I CCTNAGG 1 cut(s) 732
BsuRI GGCC 3 cut(s) 121, 146, 1064
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 5 cut(s) 64, 379, 658, 696, 753
BtsI GCAGTG 3 cut(s) 277, 325, 897
BtsIMutI CAGTG 4 cut(s) 198, 277, 325, 897
Cac8I GCNNGC 4 cut(s) 96, 123, 826, 960
CfoI GCGC 1 cut(s) 636
Cfr13I GGNCC 2 cut(s) 68, 933
CseI GACGC 3 cut(s) 425, 599, 787
CspCI CAANNNNNGTGG 2 cut(s) 1054, 1089
CviAII CATG 8 cut(s) 48, 344, 407, 638, 701, 739, 930, 1006
DdeI CTNAG 4 cut(s) 241, 474, 732, 774
DpnI GATC 4 cut(s) 75, 324, 378, 1090
DpnII GATC 4 cut(s) 73, 322, 376, 1088
DriI GACNNNNNGTC 1 cut(s) 233
EaeI YGGCCR 2 cut(s) 144, 1062
Eam1104I CTCTTC 2 cut(s) 708, 984
Eam1105I GACNNNNNGTC 1 cut(s) 233
EarI CTCTTC 2 cut(s) 708, 984
Eco130I CCWWGG 2 cut(s) 47, 1059
Eco24I GRGCYC 1 cut(s) 979
Eco31I GGTCTC 2 cut(s) 777, 850
Eco47I GGWCC 2 cut(s) 68, 933
Eco57I CTGAAG 2 cut(s) 740, 820
Eco81I CCTNAGG 1 cut(s) 732
Eco91I GGTNACC 1 cut(s) 41
EcoO65I GGTNACC 1 cut(s) 41
EcoRII CCWGG 3 cut(s) 20, 187, 223
EcoT14I CCWWGG 2 cut(s) 47, 1059
EcoT22I ATGCAT 1 cut(s) 349
EcoT38I GRGCYC 1 cut(s) 979
ErhI CCWWGG 2 cut(s) 47, 1059
FaeI CATG 8 cut(s) 51, 347, 410, 641, 704, 742, 933, 1009
FaqI GGGAC 2 cut(s) 580, 1044
FatI CATG 8 cut(s) 47, 343, 406, 637, 700, 738, 929, 1005
FauI CCCGC 1 cut(s) 803
FbaI TGATCA 2 cut(s) 322, 376
Fnu4HI GCNGC 4 cut(s) 339, 822, 956, 963
FokI GGATG 5 cut(s) 71, 366, 645, 683, 740
FriOI GRGCYC 1 cut(s) 979
Fsp4HI GCNGC 4 cut(s) 339, 822, 956, 963
FspBI CTAG 2 cut(s) 548, 1034
GlaI GCGC 1 cut(s) 635
GluI GCNGC 4 cut(s) 339, 822, 956, 963
HaeII RGCGCY 1 cut(s) 637
HaeIII GGCC 3 cut(s) 121, 146, 1064
HgaI GACGC 3 cut(s) 425, 599, 787
HhaI GCGC 1 cut(s) 636
Hin1II CATG 8 cut(s) 51, 347, 410, 641, 704, 742, 933, 1009
Hin6I GCGC 1 cut(s) 634
HinP1I GCGC 1 cut(s) 634
HincII GTYRAC 2 cut(s) 238, 520
HindII GTYRAC 2 cut(s) 238, 520
HinfI GANTC 6 cut(s) 29, 307, 356, 371, 389, 431
HphI GGTGA 2 cut(s) 35, 844
Hpy166II GTNNAC 3 cut(s) 198, 238, 520
Hpy188I TCNGA 6 cut(s) 160, 180, 306, 352, 376, 925
Hpy188III TCNNGA 4 cut(s) 129, 383, 734, 802
Hpy8I GTNNAC 3 cut(s) 198, 238, 520
Hpy99I CGWCG 1 cut(s) 160
HpyAV CCTTC 3 cut(s) 844, 878, 1021
HpyCH4III ACNGT 3 cut(s) 184, 235, 442
HpyCH4V TGCA 4 cut(s) 347, 404, 597, 704
HpyF10VI GCNNNNNNNGC 4 cut(s) 104, 131, 344, 896
HpyF3I CTNAG 4 cut(s) 241, 474, 732, 774
Hsp92II CATG 8 cut(s) 51, 347, 410, 641, 704, 742, 933, 1009
HspAI GCGC 1 cut(s) 634
Ksp22I TGATCA 2 cut(s) 322, 376
Kzo9I GATC 4 cut(s) 73, 322, 376, 1088
LguI GCTCTTC 2 cut(s) 708, 984
LmnI GCTCC 2 cut(s) 487, 887
Lsp1109I GCAGC 3 cut(s) 350, 942, 974
LweI GCATC 6 cut(s) 49, 356, 391, 681, 739, 818
MaeI CTAG 2 cut(s) 548, 1034
MaeIII GTNAC 3 cut(s) 41, 763, 829
MalI GATC 4 cut(s) 75, 324, 378, 1090
MboI GATC 4 cut(s) 73, 322, 376, 1088
MboII GAAGA 9 cut(s) 9, 303, 365, 406, 725, 733, 799, 971, 1036
MfeI CAATTG 1 cut(s) 1109
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 1 cut(s) 979
MlsI TGGCCA 1 cut(s) 1064
MluCI AATT 5 cut(s) 13, 283, 555, 919, 1109
MluNI TGGCCA 1 cut(s) 1064
MlyI GAGTC 1 cut(s) 398
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 3 cut(s) 97, 218, 741
Mox20I TGGCCA 1 cut(s) 1064
Mph1103I ATGCAT 1 cut(s) 349
MscI TGGCCA 1 cut(s) 1064
MseI TTAA 4 cut(s) 444, 615, 780, 1053
MslI CAYNNNNRTG 3 cut(s) 384, 411, 642
Msp20I TGGCCA 1 cut(s) 1064
MspA1I CMGCKG 1 cut(s) 965
MspR9I CCNGG 3 cut(s) 22, 189, 225
MunI CAATTG 1 cut(s) 1109
MvaI CCWGG 3 cut(s) 22, 189, 225
MvnI CGCG 1 cut(s) 798
MwoI GCNNNNNNNGC 4 cut(s) 104, 131, 344, 896
NcoI CCATGG 1 cut(s) 47
NdeII GATC 4 cut(s) 73, 322, 376, 1088
NlaIII CATG 8 cut(s) 51, 347, 410, 641, 704, 742, 933, 1009
NmuCI GTSAC 3 cut(s) 41, 763, 829
NsiI ATGCAT 1 cut(s) 349
NspI RCATGY 2 cut(s) 410, 742
PciI ACATGT 1 cut(s) 406
PciSI GCTCTTC 2 cut(s) 708, 984
PfeI GAWTC 5 cut(s) 29, 307, 356, 371, 431
PflFI GACNNNGTC 1 cut(s) 769
PkrI GCNGC 4 cut(s) 340, 823, 957, 964
PleI GAGTC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 397
PscI ACATGT 1 cut(s) 406
Psp6I CCWGG 3 cut(s) 20, 187, 223
PspEI GGTNACC 1 cut(s) 41
PspGI CCWGG 3 cut(s) 20, 187, 223
PspPI GGNCC 2 cut(s) 68, 933
PsuI RGATCY 1 cut(s) 73
PsyI GACNNNGTC 1 cut(s) 769
PvuII CAGCTG 1 cut(s) 965
RseI CAYNNNNRTG 3 cut(s) 384, 411, 642
SapI GCTCTTC 2 cut(s) 708, 984
SaqAI TTAA 4 cut(s) 444, 615, 780, 1053
SatI GCNGC 4 cut(s) 339, 822, 956, 963
Sau3AI GATC 4 cut(s) 73, 322, 376, 1088
Sau96I GGNCC 2 cut(s) 68, 933
SchI GAGTC 1 cut(s) 398
ScrFI CCNGG 3 cut(s) 22, 189, 225
SduI GDGCHC 1 cut(s) 979
SfaNI GCATC 6 cut(s) 49, 356, 391, 681, 739, 818
SinI GGWCC 2 cut(s) 68, 933
SmiMI CAYNNNNRTG 3 cut(s) 384, 411, 642
SpeI ACTAGT 1 cut(s) 1033
Sse9I AATT 5 cut(s) 13, 283, 555, 919, 1109
SsiI CCGC 3 cut(s) 796, 822, 855
SspI AATATT 1 cut(s) 448
SspMI CTAG 2 cut(s) 548, 1034
StyD4I CCNGG 3 cut(s) 20, 187, 223
StyI CCWWGG 2 cut(s) 47, 1059
TaaI ACNGT 3 cut(s) 184, 235, 442
TaqI TCGA 2 cut(s) 392, 945
TasI AATT 5 cut(s) 13, 283, 555, 919, 1109
TauI GCSGC 1 cut(s) 824
TfiI GAWTC 5 cut(s) 29, 307, 356, 371, 431
Tru1I TTAA 4 cut(s) 444, 615, 780, 1053
Tru9I TTAA 4 cut(s) 444, 615, 780, 1053
TscAI CASTG 4 cut(s) 205, 277, 325, 897
TseFI GTSAC 3 cut(s) 41, 763, 829
TseI GCWGC 3 cut(s) 338, 955, 962
Tsp45I GTSAC 3 cut(s) 41, 763, 829
TspDTI ATGAA 1 cut(s) 1037
TspGWI ACGGA 1 cut(s) 244
TspRI CASTG 4 cut(s) 205, 277, 325, 897
Tth111I GACNNNGTC 1 cut(s) 769
VpaK11BI GGWCC 2 cut(s) 68, 933
XapI RAATTY 1 cut(s) 919
XceI RCATGY 2 cut(s) 410, 742
XcmI CCANNNNNNNNNTGG 1 cut(s) 1072
XspI CTAG 2 cut(s) 548, 1034
Zsp2I ATGCAT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.