Rmu_sc0005921.1_g000002

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005921.1
OG0005111
Physical Location & Seq
Forward (+)
3876 .. 6157
2282 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 876 bp
atggcacgtacgccatttctcttatgcctgctctgcgctactctacatatggaggttgaatccctccgtgcagtggatgattgcaagcggtatgttcatgacttttcttttgttcacttccgcagtgagttccgccatgtgtaccgagaagcaaacggtgtggtccataggttggcttaccttgctagttttagtagtattgatgaactatggttaaagaaaactcctgttattattcaggatgtgctcaacgaagataattgtatttctagctacccggggcttatatgttatgtcttccctgttgtactatttttgattctacctctacgtctagtttgggctaagcgacccactgaaagccgttggaagttggaacctatttacatcgaaaaaaaacccagtcgtcattcggcaaccaccaaaaagccgagcagccgagcacagcagcctccctcttcgtccgcccttctctattccgtcacccaaaatccaactctctctctctcgcatctctatctgcgccccccaatttctcaaggtttgaacatgaatgctttcaaggcttttaaaaccaatgttccaattgcatggagccctaatctgtatataactctggtgaggggaatcccaggaaccaggaggcttcacaggcgtactttagaggcattacgtcttcgaaaatgcaaccgaactgtcatgcgatggaacactcctactgttaggggaatgatccaacaggtcaagagattggttgtggttgagacagaagagatgtataaggcccgcaaacaaaaggatgcagaccaccgagctcctcgccccccattgattataaatcacctccctgcttctgcaaatggttcttcttcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L30

Protein Analysis

291

Amino Acids

33.5

Weight (kDa)

10.14

Isoelectric Point (pI)

53.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L30 PF00327 203 - 252 7.1e-17 Ribosomal protein L30p/L7e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 836
AccB7I CCANNNNNTGG 1 cut(s) 172
AciI CCGC 5 cut(s) 88, 121, 133, 465, 787
AclWI GGATC 1 cut(s) 727
AfaI GTAC 4 cut(s) 10, 143, 309, 658
AfiI CCNNNNNNNGG 2 cut(s) 73, 172
AgsI TTSAA 3 cut(s) 59, 547, 562
AjnI CCWGG 2 cut(s) 631, 638
AluBI AGCT 2 cut(s) 273, 815
AluI AGCT 2 cut(s) 273, 815
Alw21I GWGCWC 3 cut(s) 249, 445, 817
Alw26I GTCTC 1 cut(s) 758
AlwI GGATC 1 cut(s) 727
Ama87I CYCGRG 1 cut(s) 277
AoxI GGCC 1 cut(s) 783
ApeKI GCWGC 2 cut(s) 435, 448
ArsI GACNNNNNNTTYG 2 cut(s) 92, 124
Asp700I GAANNNNTTC 1 cut(s) 557
AspLEI GCGC 2 cut(s) 38, 525
AspS9I GGNCC 2 cut(s) 163, 784
AsuC2I CCSGG 2 cut(s) 278, 279
AsuHPI GGTGA 3 cut(s) 475, 631, 833
AsuII TTCGAA 1 cut(s) 679
AvaI CYCGRG 1 cut(s) 277
AvaII GGWCC 1 cut(s) 163
BanII GRGCYC 2 cut(s) 599, 817
BbsI GAAGAC 2 cut(s) 289, 668
Bbv12I GWGCWC 3 cut(s) 249, 445, 817
BbvI GCAGC 2 cut(s) 447, 460
BccI CCATC 1 cut(s) 699
BceAI ACGGC 1 cut(s) 348
BciT130I CCWGG 2 cut(s) 633, 640
BcnI CCSGG 2 cut(s) 278, 279
BcoDI GTCTC 1 cut(s) 758
BfaI CTAG 3 cut(s) 186, 270, 335
BisI GCNGC 2 cut(s) 436, 449
BlpI GCTNAGC 1 cut(s) 345
BlsI GCNGC 2 cut(s) 437, 450
Bme1390I CCNGG 4 cut(s) 278, 279, 633, 640
Bme18I GGWCC 1 cut(s) 163
BmeT110I CYCGRG 1 cut(s) 277
BmgT120I GGNCC 2 cut(s) 163, 784
BmiI GGNNCC 3 cut(s) 378, 596, 637
BmrFI CCNGG 4 cut(s) 278, 279, 633, 640
BmrI ACTGGG 1 cut(s) 396
BmsI GCATC 2 cut(s) 520, 790
BmuI ACTGGG 1 cut(s) 396
BpiI GAAGAC 2 cut(s) 289, 668
Bpu1102I GCTNAGC 1 cut(s) 345
Bpu14I TTCGAA 1 cut(s) 679
BpuEI CTTGAG 1 cut(s) 522
BpuMI CCSGG 2 cut(s) 278, 279
BsaAI YACGTR 1 cut(s) 8
BsaJI CCNNGG 3 cut(s) 277, 278, 631
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 172
Bse1I ACTGG 1 cut(s) 402
BseBI CCWGG 2 cut(s) 633, 640
BseDI CCNNGG 3 cut(s) 277, 278, 631
BseGI GGATG 3 cut(s) 82, 247, 805
BseLI CCNNNNNNNGG 2 cut(s) 73, 172
BseNI ACTGG 1 cut(s) 402
BseRI GAGGAG 1 cut(s) 807
BseXI GCAGC 2 cut(s) 447, 460
BsgI GTGCAG 1 cut(s) 90
BshFI GGCC 1 cut(s) 785
BsiHKAI GWGCWC 3 cut(s) 249, 445, 817
BsiHKCI CYCGRG 1 cut(s) 277
BsiSI CCGG 1 cut(s) 278
BsiWI CGTACG 1 cut(s) 8
BslI CCNNNNNNNGG 2 cut(s) 73, 172
BsmAI GTCTC 1 cut(s) 758
BsmI GAATGC 1 cut(s) 559
BsnI GGCC 1 cut(s) 785
BsoBI CYCGRG 1 cut(s) 277
Bsp119I TTCGAA 1 cut(s) 679
Bsp1286I GDGCHC 4 cut(s) 249, 445, 599, 817
Bsp143I GATC 1 cut(s) 732
Bsp1720I GCTNAGC 1 cut(s) 345
BspACI CCGC 5 cut(s) 88, 121, 133, 465, 787
BspANI GGCC 1 cut(s) 785
BspHI TCATGA 1 cut(s) 97
BspLI GGNNCC 3 cut(s) 378, 596, 637
BspPI GGATC 1 cut(s) 727
BspT104I TTCGAA 1 cut(s) 679
BsrI ACTGG 1 cut(s) 402
BssECI CCNNGG 3 cut(s) 277, 278, 631
BssMI GATC 1 cut(s) 732
Bst2UI CCWGG 2 cut(s) 633, 640
Bst4CI ACNGT 3 cut(s) 158, 697, 721
Bst6I CTCTTC 2 cut(s) 463, 765
BstBAI YACGTR 1 cut(s) 8
BstBI TTCGAA 1 cut(s) 679
BstC8I GCNNGC 3 cut(s) 29, 86, 787
BstDEI CTNAG 1 cut(s) 345
BstF5I GGATG 3 cut(s) 82, 247, 805
BstHHI GCGC 2 cut(s) 38, 525
BstKTI GATC 1 cut(s) 735
BstMAI GTCTC 1 cut(s) 758
BstMBI GATC 1 cut(s) 732
BstMWI GCNNNNNNNGC 4 cut(s) 33, 182, 563, 652
BstNI CCWGG 2 cut(s) 633, 640
BstSCI CCNGG 4 cut(s) 276, 277, 631, 638
BstV1I GCAGC 2 cut(s) 447, 460
BstV2I GAAGAC 2 cut(s) 289, 668
BstXI CCANNNNNNTGG 1 cut(s) 591
BsuRI GGCC 1 cut(s) 785
BtgZI GCGATG 1 cut(s) 718
BtsCI GGATG 3 cut(s) 82, 247, 805
BtsI GCAGTG 2 cut(s) 78, 130
BtsIMutI CAGTG 3 cut(s) 78, 130, 354
Cac8I GCNNGC 3 cut(s) 29, 86, 787
CciI TCATGA 1 cut(s) 97
CfoI GCGC 2 cut(s) 38, 525
Cfr13I GGNCC 2 cut(s) 163, 784
Cfr9I CCCGGG 1 cut(s) 277
Csp6I GTAC 4 cut(s) 9, 142, 308, 657
CspCI CAANNNNNGTGG 2 cut(s) 141, 176
CviAII CATG 5 cut(s) 98, 137, 550, 591, 700
CviQI GTAC 4 cut(s) 9, 142, 308, 657
DdeI CTNAG 1 cut(s) 345
DpnI GATC 1 cut(s) 734
DpnII GATC 1 cut(s) 732
DraI TTTAAA 1 cut(s) 571
Eam1104I CTCTTC 2 cut(s) 463, 765
EarI CTCTTC 2 cut(s) 463, 765
EciI GGCGGA 2 cut(s) 122, 454
Ecl136II GAGCTC 1 cut(s) 815
Eco24I GRGCYC 2 cut(s) 599, 817
Eco47I GGWCC 1 cut(s) 163
Eco53kI GAGCTC 1 cut(s) 815
Eco88I CYCGRG 1 cut(s) 277
EcoICRI GAGCTC 1 cut(s) 815
EcoRII CCWGG 2 cut(s) 631, 638
EcoT38I GRGCYC 2 cut(s) 599, 817
FaeI CATG 5 cut(s) 101, 140, 553, 594, 703
FatI CATG 5 cut(s) 97, 136, 549, 590, 699
FauI CCCGC 1 cut(s) 794
FauNDI CATATG 1 cut(s) 48
Fnu4HI GCNGC 2 cut(s) 436, 449
FokI GGATG 3 cut(s) 89, 254, 812
FriOI GRGCYC 2 cut(s) 599, 817
Fsp4HI GCNGC 2 cut(s) 436, 449
FspBI CTAG 3 cut(s) 186, 270, 335
GlaI GCGC 2 cut(s) 37, 524
GluI GCNGC 2 cut(s) 436, 449
HaeIII GGCC 1 cut(s) 785
HapII CCGG 1 cut(s) 278
HhaI GCGC 2 cut(s) 38, 525
Hin1II CATG 5 cut(s) 101, 140, 553, 594, 703
Hin6I GCGC 2 cut(s) 36, 523
HinP1I GCGC 2 cut(s) 36, 523
HinfI GANTC 3 cut(s) 59, 319, 627
HpaII CCGG 1 cut(s) 278
HphI GGTGA 3 cut(s) 475, 631, 833
Hpy166II GTNNAC 2 cut(s) 115, 142
Hpy188III TCNNGA 3 cut(s) 98, 239, 745
Hpy8I GTNNAC 2 cut(s) 115, 142
HpyAV CCTTC 1 cut(s) 479
HpyCH4III ACNGT 3 cut(s) 158, 697, 721
HpyCH4IV ACGT 3 cut(s) 7, 331, 673
HpyCH4V TGCA 6 cut(s) 71, 84, 590, 687, 803, 857
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 182, 563, 652
HpyF3I CTNAG 1 cut(s) 345
HpySE526I ACGT 3 cut(s) 7, 331, 673
Hsp92II CATG 5 cut(s) 101, 140, 553, 594, 703
HspAI GCGC 2 cut(s) 36, 523
Kzo9I GATC 1 cut(s) 732
LmnI GCTCC 2 cut(s) 594, 820
Lsp1109I GCAGC 2 cut(s) 447, 460
LweI GCATC 2 cut(s) 520, 790
MaeI CTAG 3 cut(s) 186, 270, 335
MaeII ACGT 3 cut(s) 7, 331, 673
MaeIII GTNAC 1 cut(s) 481
MalI GATC 1 cut(s) 734
MboI GATC 1 cut(s) 732
MboII GAAGA 7 cut(s) 266, 289, 450, 668, 782, 858, 861
MfeI CAATTG 1 cut(s) 585
MhlI GDGCHC 4 cut(s) 249, 445, 599, 817
MluCI AATT 3 cut(s) 259, 531, 585
MmeI TCCRAC 4 cut(s) 347, 354, 518, 760
MroXI GAANNNNTTC 1 cut(s) 557
MseI TTAA 2 cut(s) 215, 570
MspI CCGG 1 cut(s) 278
MspR9I CCNGG 4 cut(s) 278, 279, 633, 640
MunI CAATTG 1 cut(s) 585
Mva1269I GAATGC 1 cut(s) 559
MvaI CCWGG 2 cut(s) 633, 640
MwoI GCNNNNNNNGC 4 cut(s) 33, 182, 563, 652
NciI CCSGG 2 cut(s) 278, 279
NdeI CATATG 1 cut(s) 48
NdeII GATC 1 cut(s) 732
NlaIII CATG 5 cut(s) 101, 140, 553, 594, 703
NlaIV GGNNCC 3 cut(s) 378, 596, 637
NmeAIII GCCGAG 2 cut(s) 456, 464
NmuCI GTSAC 1 cut(s) 481
NspV TTCGAA 1 cut(s) 679
PagI TCATGA 1 cut(s) 97
PctI GAATGC 1 cut(s) 559
PdmI GAANNNNTTC 1 cut(s) 557
PfeI GAWTC 3 cut(s) 59, 319, 627
Pfl23II CGTACG 1 cut(s) 8
PflMI CCANNNNNTGG 1 cut(s) 172
PkrI GCNGC 2 cut(s) 437, 450
Ppu21I YACGTR 1 cut(s) 8
PsiI TTATAA 1 cut(s) 836
Psp124BI GAGCTC 1 cut(s) 817
Psp6I CCWGG 2 cut(s) 631, 638
PspGI CCWGG 2 cut(s) 631, 638
PspLI CGTACG 1 cut(s) 8
PspN4I GGNNCC 3 cut(s) 378, 596, 637
PspPI GGNCC 2 cut(s) 163, 784
RsaI GTAC 4 cut(s) 10, 143, 309, 658
RsaNI GTAC 4 cut(s) 9, 142, 308, 657
SacI GAGCTC 1 cut(s) 817
SaqAI TTAA 2 cut(s) 215, 570
SatI GCNGC 2 cut(s) 436, 449
Sau3AI GATC 1 cut(s) 732
Sau96I GGNCC 2 cut(s) 163, 784
ScrFI CCNGG 4 cut(s) 278, 279, 633, 640
SduI GDGCHC 4 cut(s) 249, 445, 599, 817
SfaNI GCATC 2 cut(s) 520, 790
SfuI TTCGAA 1 cut(s) 679
SinI GGWCC 1 cut(s) 163
SmaI CCCGGG 1 cut(s) 279
SmlI CTYRAG 1 cut(s) 537
SmoI CTYRAG 1 cut(s) 537
Sse9I AATT 3 cut(s) 259, 531, 585
SsiI CCGC 5 cut(s) 88, 121, 133, 465, 787
SspMI CTAG 3 cut(s) 186, 270, 335
SstI GAGCTC 1 cut(s) 817
StyD4I CCNGG 4 cut(s) 276, 277, 631, 638
TaaI ACNGT 3 cut(s) 158, 697, 721
TaiI ACGT 3 cut(s) 10, 334, 676
TaqI TCGA 2 cut(s) 390, 679
TasI AATT 3 cut(s) 259, 531, 585
TatI WGTACW 1 cut(s) 307
TfiI GAWTC 3 cut(s) 59, 319, 627
Tru1I TTAA 2 cut(s) 215, 570
Tru9I TTAA 2 cut(s) 215, 570
TscAI CASTG 3 cut(s) 78, 130, 361
TseFI GTSAC 1 cut(s) 481
TseI GCWGC 2 cut(s) 435, 448
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 4 cut(s) 86, 219, 566, 861
TspGWI ACGGA 2 cut(s) 56, 469
TspMI CCCGGG 1 cut(s) 277
TspRI CASTG 3 cut(s) 78, 130, 361
Van91I CCANNNNNTGG 1 cut(s) 172
VpaK11BI GGWCC 1 cut(s) 163
XmaI CCCGGG 1 cut(s) 277
XmnI GAANNNNTTC 1 cut(s) 557
XspI CTAG 3 cut(s) 186, 270, 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.