Rmu_sc0006008.1_g000003

protein ubiquitination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006008.1
OG0008844
Physical Location & Seq
Forward (+)
8979 .. 11692
2714 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1980 bp
atgtcgtcgacttataagacaagatccttttgttactatctcttcttgaaaaggaagtgggagaggatgaaagaattttactcggataactacctaaatatatgtttgcctcatacagtgtccaaggataccgcagttcatgttgcagtgtacagtgacaacgaagaactggtgaaatctctgcttcacatggtgtatagagaatacgcagattactttttgggaggaccagcaatatttcagaaacagaatgcatttggaaatacacctcttcacgaggcagcttcgataggaaatgtcgacatggtgaagatcataatgcaatatgatccgaagcaactgaatactaaaaacgagagaggtgaaacacccttttttacggccgccgtatatggcaacaccaatgtgatcaggcatttggcggcagagatcaagaaagatgctgtggagaatcatacctcatctcacggctccaccatgcttcatgaagctattcgcggctattactttgaaacagctctggagttagtaaaaccagaataccacatacggacagatcggaaggattcagatggcataacctgttttcagctgctagctaacattccatctgcttttgagagtggatattcctttggcatattggagaaactgatctatctttgccttccggtagatgattacagcaaaaacaaggacgaaaccaacagtgtatctcaggtccctccatctccaaatacagatttggagcgtggagatcacagcaaagacaaggatggaaacaaaaatgtatctcatttccctccaagtccaaacaagatcacagcaaaaatgtacgtcaccttttggagcatcattgctaaagggttcccatctattaaagatctgtgggacacaaagaagaagcacggcatagtggtggagctttcaaaacttctggctggaggagacaagtcatggcaggttaacaacactgatggtcaaaatgacactccacttctggctgctgctaggaatgggattatagaaatcattgaggccatttttaatctgttcccacaggccatcgagcatgaaaaccacaaaagagagaacatatttcatgttgttgtggagcatcggaggagacagcttttggaatatcttctccgaacttgtcatgtttcatatccgaggctcctgtggaaaatcaatcaagacggtgacggcattttgcataaagcagcatataagagtcactattcctcaagggagaggccaggggaagcccttcgcttgcagtcagatattcactggtttgagcgagtgaagaaattggtgcctccacatcacatcaaccatcttaatcatcatgaaaatttgacacctcatgctttgttcacaaaagagcataatgaactggtgaagaatggccaagaatggttaatcagaacaacaaactcttgcattatagttgcagttcttattgcaacggttgcttttacaagcatctacaccgtgcctggaggttcggatccaaagacaggcaagcccttgctcctaaccaaaacaccattcactgtcttcacagcatctgatgtggcatccctttgttttgccttcacctccgtggtggtgtttctatccatcagcacatcgaaaatgaatgagagagatttccggagggctctgccattgaagcttgttttggggttaagcatgctgttttggtctgtggcagcattgatggttggttttgctgctactcttgacattacaataaaccagaggctgcatcaggctactgctcttatcattaccattgcttgttttccagttgcctttttcctccttctgcagcttcctctctatttcaatattacttggtttacgataaaggacttgctgcaaactctagttgattgtattcctcaacaaaaatgtaagagctctagctgtcttatgcgctatcaagtgagctttggtcattcattgtgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

659

Amino Acids

74.98

Weight (kDa)

8.6

Isoelectric Point (pI)

38.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 41 - 109 5.4e-07 Ankyrin repeats (3 copies)
Ank_2 PF12796 47 - 145 2.2e-12 Ankyrin repeats (3 copies)
Ank_4 PF13637 47 - 104 1.9e-06 Ankyrin repeats (many copies)
Ank_2 PF12796 114 - 182 4.1e-06 Ankyrin repeats (3 copies)
PGG PF13962 473 - 583 3.6e-23 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 15
Acc36I ACCTGC 1 cut(s) 952
AccB1I GGYRCC 1 cut(s) 1318
AccI GTMKAC 2 cut(s) 8, 300
AccII CGCG 1 cut(s) 498
AccIII TCCGGA 1 cut(s) 1659
AciI CCGC 4 cut(s) 132, 384, 422, 498
AclWI GGATC 4 cut(s) 18, 323, 1508, 1521
AcoI YGGCCR 2 cut(s) 381, 1411
AcsI RAATTY 2 cut(s) 74, 1357
AdeI CACNNNGTG 1 cut(s) 193
AfaI GTAC 2 cut(s) 152, 836
AfiI CCNNNNNNNGG 1 cut(s) 1523
AgsI TTSAA 5 cut(s) 49, 512, 930, 1678, 1855
AjnI CCWGG 2 cut(s) 1258, 1501
AjuI GAANNNNNNNTTGG 4 cut(s) 1538, 1570, 1670, 1702
AleI CACNNNNGTG 2 cut(s) 404, 1607
Alw21I GWGCWC 1 cut(s) 1931
Alw26I GTCTC 2 cut(s) 942, 1120
AlwI GGATC 4 cut(s) 18, 323, 1508, 1521
AlwNI CAGNNNCTG 2 cut(s) 1574, 1771
Aor13HI TCCGGA 1 cut(s) 1659
AoxI GGCC 5 cut(s) 381, 1038, 1062, 1256, 1411
ApoI RAATTY 2 cut(s) 74, 1357
Asp700I GAANNNNTTC 3 cut(s) 492, 1143, 1269
AspLEI GCGC 1 cut(s) 1947
AspS9I GGNCC 2 cut(s) 227, 721
AsuHPI GGTGA 7 cut(s) 184, 319, 374, 832, 1214, 1414, 1594
AsuNHI GCTAGC 1 cut(s) 595
AvaII GGWCC 2 cut(s) 227, 721
BaeI ACNNNNGTAYC 2 cut(s) 120, 153
BalI TGGCCA 1 cut(s) 1413
BamHI GGATCC 1 cut(s) 1513
BanI GGYRCC 1 cut(s) 1318
BanII GRGCYC 2 cut(s) 1669, 1931
BauI CACGAG 1 cut(s) 275
BbsI GAAGAC 1 cut(s) 1555
Bbv12I GWGCWC 1 cut(s) 1931
BceAI ACGGC 5 cut(s) 371, 396, 484, 925, 1222
BciT130I CCWGG 2 cut(s) 1260, 1503
BciVI GTATCC 1 cut(s) 121
BclI TGATCA 1 cut(s) 408
BcoDI GTCTC 2 cut(s) 942, 1120
BfaI CTAG 4 cut(s) 596, 1011, 1895, 1932
BfmI CTRYAG 1 cut(s) 1835
BfuAI ACCTGC 1 cut(s) 952
BfuI GTATCC 1 cut(s) 121
BglII AGATCT 1 cut(s) 883
Bme1390I CCNGG 2 cut(s) 1260, 1503
Bme18I GGWCC 2 cut(s) 227, 721
BmgT120I GGNCC 2 cut(s) 227, 721
BmiI GGNNCC 6 cut(s) 472, 723, 869, 1178, 1320, 1515
BmrFI CCNGG 2 cut(s) 1260, 1503
BmsI GCATC 7 cut(s) 430, 861, 1126, 1497, 1580, 1592, 1783
BmtI GCTAGC 1 cut(s) 599
BpiI GAAGAC 1 cut(s) 1555
BpmI CTGGAG 3 cut(s) 542, 963, 1524
BpuEI CTTGAG 1 cut(s) 1231
BsaJI CCNNGG 4 cut(s) 123, 1172, 1259, 1608
BsaWI WCCGGW 2 cut(s) 670, 1659
Bsc4I CCNNNNNNNGG 1 cut(s) 1523
Bse1I ACTGG 4 cut(s) 174, 1298, 1404, 1814
Bse3DI GCAATG 2 cut(s) 855, 1800
BseAI TCCGGA 1 cut(s) 1659
BseBI CCWGG 2 cut(s) 1260, 1503
BseDI CCNNGG 4 cut(s) 123, 1172, 1259, 1608
BseGI GGATG 3 cut(s) 72, 781, 1583
BseLI CCNNNNNNNGG 1 cut(s) 1523
BseMI GCAATG 2 cut(s) 855, 1800
BseMII CTCAG 1 cut(s) 731
BseNI ACTGG 4 cut(s) 174, 1298, 1404, 1814
BseRI GAGGAG 2 cut(s) 960, 1138
BseX3I CGGCCG 1 cut(s) 381
Bsh1236I CGCG 1 cut(s) 498
Bsh1285I CGRYCG 1 cut(s) 384
BshFI GGCC 5 cut(s) 383, 1040, 1064, 1258, 1413
BshNI GGYRCC 1 cut(s) 1318
BsiEI CGRYCG 1 cut(s) 384
BsiHKAI GWGCWC 1 cut(s) 1931
BsiSI CCGG 2 cut(s) 671, 1660
BslFI GGGAC 2 cut(s) 707, 905
BslI CCNNNNNNNGG 1 cut(s) 1523
BsmAI GTCTC 2 cut(s) 942, 1120
BsmFI GGGAC 2 cut(s) 707, 905
BsmI GAATGC 1 cut(s) 256
BsnI GGCC 5 cut(s) 383, 1040, 1064, 1258, 1413
Bsp1286I GDGCHC 2 cut(s) 1669, 1931
Bsp13I TCCGGA 1 cut(s) 1659
Bsp1407I TGTACA 1 cut(s) 150
BspACI CCGC 4 cut(s) 132, 384, 422, 498
BspANI GGCC 5 cut(s) 383, 1040, 1064, 1258, 1413
BspCNI CTCAG 1 cut(s) 730
BspEI TCCGGA 1 cut(s) 1659
BspFNI CGCG 1 cut(s) 498
BspHI TCATGA 2 cut(s) 484, 1351
BspLI GGNNCC 6 cut(s) 472, 723, 869, 1178, 1320, 1515
BspMAI CTGCAG 1 cut(s) 1839
BspMI ACCTGC 1 cut(s) 952
BspOI GCTAGC 1 cut(s) 599
BspPI GGATC 4 cut(s) 18, 323, 1508, 1521
BspT107I GGYRCC 1 cut(s) 1318
BsrDI GCAATG 2 cut(s) 855, 1800
BsrGI TGTACA 1 cut(s) 150
BsrI ACTGG 4 cut(s) 174, 1298, 1404, 1814
BssECI CCNNGG 4 cut(s) 123, 1172, 1259, 1608
BssSI CACGAG 1 cut(s) 275
BssT1I CCWWGG 1 cut(s) 123
Bst2BI CACGAG 1 cut(s) 275
Bst2UI CCWGG 2 cut(s) 1260, 1503
Bst4CI ACNGT 7 cut(s) 118, 155, 710, 1202, 1474, 1498, 1561
Bst6I CTCTTC 2 cut(s) 47, 276
BstAPI GCANNNNNTGC 1 cut(s) 1475
BstAUI TGTACA 1 cut(s) 150
BstC8I GCNNGC 4 cut(s) 597, 1277, 1529, 1700
BstDEI CTNAG 1 cut(s) 717
BstDSI CCRYGG 1 cut(s) 1608
BstF5I GGATG 3 cut(s) 72, 781, 1583
BstFNI CGCG 1 cut(s) 498
BstHHI GCGC 1 cut(s) 1947
BstMAI GTCTC 2 cut(s) 942, 1120
BstMCI CGRYCG 1 cut(s) 384
BstMWI GCNNNNNNNGC 2 cut(s) 1475, 1678
BstNI CCWGG 2 cut(s) 1260, 1503
BstNSI RCATGY 1 cut(s) 1702
BstSCI CCNGG 2 cut(s) 1258, 1501
BstSFI CTRYAG 1 cut(s) 1835
BstUI CGCG 1 cut(s) 498
BstV2I GAAGAC 1 cut(s) 1555
BstX2I RGATCY 3 cut(s) 23, 883, 1513
BstYI RGATCY 3 cut(s) 23, 883, 1513
BstZI CGGCCG 1 cut(s) 381
BsuI GTATCC 1 cut(s) 121
BsuRI GGCC 5 cut(s) 383, 1040, 1064, 1258, 1413
BtgI CCRYGG 1 cut(s) 1608
BtsCI GGATG 3 cut(s) 72, 781, 1583
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 7 cut(s) 123, 153, 160, 715, 972, 1291, 1557
BveI ACCTGC 1 cut(s) 952
Cac8I GCNNGC 4 cut(s) 597, 1277, 1529, 1700
CaiI CAGNNNCTG 2 cut(s) 1574, 1771
CciI TCATGA 2 cut(s) 484, 1351
CfoI GCGC 1 cut(s) 1947
Cfr13I GGNCC 2 cut(s) 227, 721
Csp6I GTAC 2 cut(s) 151, 835
CviQI GTAC 2 cut(s) 151, 835
DdeI CTNAG 1 cut(s) 717
DraIII CACNNNGTG 1 cut(s) 193
EaeI YGGCCR 2 cut(s) 381, 1411
EagI CGGCCG 1 cut(s) 381
Eam1104I CTCTTC 2 cut(s) 47, 276
EarI CTCTTC 2 cut(s) 47, 276
Ecl136II GAGCTC 1 cut(s) 1929
EclXI CGGCCG 1 cut(s) 381
Eco130I CCWWGG 1 cut(s) 123
Eco24I GRGCYC 2 cut(s) 1669, 1931
Eco47I GGWCC 2 cut(s) 227, 721
Eco52I CGGCCG 1 cut(s) 381
Eco53kI GAGCTC 1 cut(s) 1929
EcoICRI GAGCTC 1 cut(s) 1929
EcoO109I RGGNCCY 1 cut(s) 721
EcoRII CCWGG 2 cut(s) 1258, 1501
EcoT14I CCWWGG 1 cut(s) 123
EcoT22I ATGCAT 1 cut(s) 256
EcoT38I GRGCYC 2 cut(s) 1669, 1931
ErhI CCWWGG 1 cut(s) 123
FaqI GGGAC 2 cut(s) 707, 905
FbaI TGATCA 1 cut(s) 408
FblI GTMKAC 2 cut(s) 8, 300
FokI GGATG 3 cut(s) 79, 788, 1570
FriOI GRGCYC 2 cut(s) 1669, 1931
FspBI CTAG 4 cut(s) 596, 1011, 1895, 1932
GlaI GCGC 1 cut(s) 1946
GsuI CTGGAG 3 cut(s) 542, 963, 1524
HaeIII GGCC 5 cut(s) 383, 1040, 1064, 1258, 1413
HapII CCGG 2 cut(s) 671, 1660
HhaI GCGC 1 cut(s) 1947
Hin6I GCGC 1 cut(s) 1945
HinP1I GCGC 1 cut(s) 1945
HincII GTYRAC 3 cut(s) 9, 301, 967
HindII GTYRAC 3 cut(s) 9, 301, 967
HindIII AAGCTT 1 cut(s) 1679
HinfI GANTC 3 cut(s) 451, 566, 1234
HpaI GTTAAC 1 cut(s) 967
HpaII CCGG 2 cut(s) 671, 1660
HphI GGTGA 7 cut(s) 184, 319, 374, 832, 1214, 1414, 1594
Hpy166II GTNNAC 6 cut(s) 9, 151, 301, 967, 1380, 1869
Hpy188III TCNNGA 9 cut(s) 46, 275, 433, 485, 521, 1196, 1352, 1660, 1748
Hpy8I GTNNAC 6 cut(s) 9, 151, 301, 967, 1380, 1869
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 5 cut(s) 556, 677, 1280, 1609, 1841
HpyCH4III ACNGT 7 cut(s) 118, 155, 710, 1202, 1474, 1498, 1561
HpyCH4IV ACGT 1 cut(s) 837
HpyF10VI GCNNNNNNNGC 2 cut(s) 1475, 1678
HpyF3I CTNAG 1 cut(s) 717
HpySE526I ACGT 1 cut(s) 837
HspAI GCGC 1 cut(s) 1945
Kpn2I TCCGGA 1 cut(s) 1659
Ksp22I TGATCA 1 cut(s) 408
KspAI GTTAAC 1 cut(s) 967
LmnI GCTCC 7 cut(s) 476, 748, 849, 922, 1114, 1182, 1542
LweI GCATC 7 cut(s) 430, 861, 1126, 1497, 1580, 1592, 1783
MaeI CTAG 4 cut(s) 596, 1011, 1895, 1932
MaeII ACGT 1 cut(s) 837
MaeIII GTNAC 5 cut(s) 32, 155, 838, 1202, 1235
MboII GAAGA 9 cut(s) 34, 176, 263, 322, 913, 1136, 1321, 1417, 1555
MflI RGATCY 3 cut(s) 23, 883, 1513
MhlI GDGCHC 2 cut(s) 1669, 1931
MlsI TGGCCA 1 cut(s) 1413
MluCI AATT 3 cut(s) 74, 1313, 1357
MluNI TGGCCA 1 cut(s) 1413
MlyI GAGTC 1 cut(s) 1243
Mox20I TGGCCA 1 cut(s) 1413
Mph1103I ATGCAT 1 cut(s) 256
MroI TCCGGA 1 cut(s) 1659
MroXI GAANNNNTTC 3 cut(s) 492, 1143, 1269
MscI TGGCCA 1 cut(s) 1413
MseI TTAA 7 cut(s) 879, 966, 1047, 1344, 1424, 1694, 1978
MslI CAYNNNNRTG 3 cut(s) 404, 917, 1607
Msp20I TGGCCA 1 cut(s) 1413
MspA1I CMGCKG 1 cut(s) 592
MspI CCGG 2 cut(s) 671, 1660
MspR9I CCNGG 2 cut(s) 1260, 1503
Mva1269I GAATGC 1 cut(s) 256
MvaI CCWGG 2 cut(s) 1260, 1503
MvnI CGCG 1 cut(s) 498
MwoI GCNNNNNNNGC 2 cut(s) 1475, 1678
NheI GCTAGC 1 cut(s) 595
NlaIV GGNNCC 6 cut(s) 472, 723, 869, 1178, 1320, 1515
NmuCI GTSAC 4 cut(s) 155, 838, 1202, 1235
NsiI ATGCAT 1 cut(s) 256
NspI RCATGY 1 cut(s) 1702
OliI CACNNNNGTG 2 cut(s) 404, 1607
PaeI GCATGC 1 cut(s) 1702
PagI TCATGA 2 cut(s) 484, 1351
PctI GAATGC 1 cut(s) 256
PdmI GAANNNNTTC 3 cut(s) 492, 1143, 1269
PfeI GAWTC 2 cut(s) 451, 566
PleI GAGTC 1 cut(s) 1242
PpsI GAGTC 1 cut(s) 1242
PpuMI RGGWCCY 1 cut(s) 721
PsiI TTATAA 1 cut(s) 15
Psp124BI GAGCTC 1 cut(s) 1931
Psp5II RGGWCCY 1 cut(s) 721
Psp6I CCWGG 2 cut(s) 1258, 1501
PspGI CCWGG 2 cut(s) 1258, 1501
PspN4I GGNNCC 6 cut(s) 472, 723, 869, 1178, 1320, 1515
PspPI GGNCC 2 cut(s) 227, 721
PspPPI RGGWCCY 1 cut(s) 721
PstI CTGCAG 1 cut(s) 1839
PstNI CAGNNNCTG 2 cut(s) 1574, 1771
PsuI RGATCY 3 cut(s) 23, 883, 1513
PvuII CAGCTG 1 cut(s) 592
RsaI GTAC 2 cut(s) 152, 836
RsaNI GTAC 2 cut(s) 151, 835
RseI CAYNNNNRTG 3 cut(s) 404, 917, 1607
SacI GAGCTC 1 cut(s) 1931
SalI GTCGAC 2 cut(s) 7, 299
SaqAI TTAA 7 cut(s) 879, 966, 1047, 1344, 1424, 1694, 1978
Sau96I GGNCC 2 cut(s) 227, 721
SchI GAGTC 1 cut(s) 1243
ScrFI CCNGG 2 cut(s) 1260, 1503
SduI GDGCHC 2 cut(s) 1669, 1931
SfaNI GCATC 7 cut(s) 430, 861, 1126, 1497, 1580, 1592, 1783
SfcI CTRYAG 1 cut(s) 1835
SinI GGWCC 2 cut(s) 227, 721
SmiMI CAYNNNNRTG 3 cut(s) 404, 917, 1607
SmlI CTYRAG 1 cut(s) 1246
SmoI CTYRAG 1 cut(s) 1246
SphI GCATGC 1 cut(s) 1702
Sse9I AATT 3 cut(s) 74, 1313, 1357
SsiI CCGC 4 cut(s) 132, 384, 422, 498
SspI AATATT 2 cut(s) 237, 1858
SspMI CTAG 4 cut(s) 596, 1011, 1895, 1932
SstI GAGCTC 1 cut(s) 1931
StyD4I CCNGG 2 cut(s) 1258, 1501
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 7 cut(s) 118, 155, 710, 1202, 1474, 1498, 1561
TaiI ACGT 1 cut(s) 840
TaqI TCGA 5 cut(s) 8, 287, 300, 1068, 1637
TasI AATT 3 cut(s) 74, 1313, 1357
TatI WGTACW 1 cut(s) 150
TauI GCSGC 3 cut(s) 386, 425, 501
TfiI GAWTC 2 cut(s) 451, 566
Tru1I TTAA 7 cut(s) 879, 966, 1047, 1344, 1424, 1694, 1978
Tru9I TTAA 7 cut(s) 879, 966, 1047, 1344, 1424, 1694, 1978
TscAI CASTG 7 cut(s) 123, 153, 160, 715, 979, 1298, 1564
TseFI GTSAC 4 cut(s) 155, 838, 1202, 1235
Tsp45I GTSAC 4 cut(s) 155, 838, 1202, 1235
TspGWI ACGGA 2 cut(s) 565, 1597
TspRI CASTG 7 cut(s) 123, 153, 160, 715, 979, 1298, 1564
VpaK11BI GGWCC 2 cut(s) 227, 721
XapI RAATTY 2 cut(s) 74, 1357
XceI RCATGY 1 cut(s) 1702
XmiI GTMKAC 2 cut(s) 8, 300
XmnI GAANNNNTTC 3 cut(s) 492, 1143, 1269
XspI CTAG 4 cut(s) 596, 1011, 1895, 1932
Zsp2I ATGCAT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.