Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006020.1

Orthogroup ID

OG0005667

Physical Location & Seq

Genomic Coordinates Reverse (-)

49112 .. 51526

Gene Structure 2415 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

atgatgcttccgtccaaaatttgtgatgattctcttaaaaatgatcagctcattgggcccaacacttcattcgactccccaatcgcttcgcccatcgccgacctgatccgagcccacacccgccgtcgtcagacccctcttgttcgccttctcgatctacctttcccgagccctctcaatttcgatgatcgccgtggccatgatgatggtgacgtcggcggtgagcgacaagttttggctggagaggatgaggaaattggggaaggggacatttgctcaaagattgcaaggaggtttccggattgggttttctcatgtgaagctgacagattgagcttcaagtggtatcatatattgaaaaagagggttttctggtgcttaattggggattttgagataatgttgaggaagaggaccaggtcaactcaaaaggatcaagatcaacaccaaatggggcatatgccaatttctaatgctcggagcccaacttcgcctctagattttagggtgtttttgaaactaggcaacccctttaggtccctaagaccacctcttcatgggcataagaggagctggggtagtagtaaagtaggcttaagcatcatcgactctcctgatgatgatgatgatgtcaaatttccagatgctaaagccggtgaggttccgattgcttatgttgttcgtgcacccaatagcttgctaattgaacaagacattataatatttgtggagaagatggttgcaccgttcaaaagactgcggagcataacttttgtaaccagcgttcctaagtcggcttccggaaagattctgagaggggagcttatacagaaagtccggtcaaacatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

283

Amino Acids

32.08

Weight (kDa)

9.03

Isoelectric Point (pI)

65.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding_C	PF13193	214 - 269	3.1e-08	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34630
fragaria_vesca	FvH4_2g10040 FvH4_4g16763
malus_domestica	MD05G1058600.v1.1 MD10G1066200.v1.1
prunus_persica	Prupe.8G088200_v2.0.a1
pyrus_communis	pycom05g04950 pycom10g05170
rosa_chinensis	RchiOBHm_Chr6g0266971
rosa_laevigata	RLG00000008549 RLG00000014055
rosa_multiflora	Rmu_sc0003410.1_g000007 Rmu_sc0006020.1_g000009 Rmu_sc0011492.1_g000008 Rmu_sc0017071.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048060 Rroxscaffold_7G00201250
rosa_rugosa	Rorug06G0028400
rosa_samantha	Rh2AG625900 Rh3BG182700 Rh4BG428300 Rh4CG443000 Rh4DG231200 Rh4DG245500 Rh4DG424000 Rh6AG149700 Rh6CG145700
rosa_wichuraiana	Rw6G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	719
AatII	GACGTC	1 cut(s)	216
AccIII	TCCGGA	2 cut(s)	298, 800
AciI	CCGC	3 cut(s)	121, 219, 760
AclWI	GGATC	2 cut(s)	100, 441
AcoI	YGGCCR	1 cut(s)	196
AcsI	RAATTY	2 cut(s)	18, 635
AcyI	GRCGYC	1 cut(s)	213
AfiI	CCNNNNNNNGG	1 cut(s)	557
AflII	CTTAAG	1 cut(s)	595
AgsI	TTSAA	5 cut(s)	340, 358, 517, 707, 751
AjnI	CCWGG	1 cut(s)	416
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
AluBI	AGCT	6 cut(s)	49, 323, 336, 573, 696, 823
AluI	AGCT	6 cut(s)	49, 323, 336, 573, 696, 823
Alw21I	GWGCWC	1 cut(s)	688
Alw44I	GTGCAC	1 cut(s)	684
AlwI	GGATC	2 cut(s)	100, 441
Ama87I	CYCGRG	1 cut(s)	166
Aor13HI	TCCGGA	2 cut(s)	298, 800
AoxI	GGCC	2 cut(s)	56, 196
ApaI	GGGCCC	1 cut(s)	60
ApaLI	GTGCAC	1 cut(s)	684
ApoI	RAATTY	2 cut(s)	18, 635
AspS9I	GGNCC	4 cut(s)	56, 57, 414, 537
AsuHPI	GGTGA	3 cut(s)	221, 233, 668
AvaI	CYCGRG	1 cut(s)	166
AvaII	GGWCC	2 cut(s)	414, 537
BaeGI	GKGCMC	2 cut(s)	60, 688
BalI	TGGCCA	1 cut(s)	198
BanII	GRGCYC	4 cut(s)	60, 115, 173, 485
Bbv12I	GWGCWC	1 cut(s)	688
BccI	CCATC	3 cut(s)	101, 200, 730
BceAI	ACGGC	2 cut(s)	108, 177
BciT130I	CCWGG	1 cut(s)	418
BclI	TGATCA	1 cut(s)	43
BfaI	CTAG	2 cut(s)	497, 521
BfrI	CTTAAG	1 cut(s)	595
Bme1390I	CCNGG	1 cut(s)	418
Bme18I	GGWCC	2 cut(s)	414, 537
BmeT110I	CYCGRG	1 cut(s)	166
BmgT120I	GGNCC	4 cut(s)	56, 57, 414, 537
BmiI	GGNNCC	4 cut(s)	58, 482, 539, 663
BmrFI	CCNGG	1 cut(s)	418
BmsI	GCATC	2 cut(s)	609, 634
BpmI	CTGGAG	1 cut(s)	261
BsaBI	GATNNNNATC	1 cut(s)	438
BsaHI	GRCGYC	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	193
BsaWI	WCCGGW	3 cut(s)	298, 800, 837
BsaXI	ACNNNNNCTCC	2 cut(s)	562, 592
Bsc4I	CCNNNNNNNGG	1 cut(s)	557
Bse118I	RCCGGY	1 cut(s)	653
Bse8I	GATNNNNATC	1 cut(s)	438
BseAI	TCCGGA	2 cut(s)	298, 800
BseBI	CCWGG	1 cut(s)	418
BseDI	CCNNGG	1 cut(s)	193
BseGI	GGATG	1 cut(s)	253
BseJI	GATNNNNATC	1 cut(s)	438
BseLI	CCNNNNNNNGG	1 cut(s)	557
BseMII	CTCAG	1 cut(s)	803
BseRI	GAGGAG	1 cut(s)	583
BseSI	GKGCMC	2 cut(s)	60, 688
BseYI	CCCAGC	1 cut(s)	573
BshFI	GGCC	2 cut(s)	58, 198
BsiHKAI	GWGCWC	1 cut(s)	688
BsiHKCI	CYCGRG	1 cut(s)	166
BsiSI	CCGG	4 cut(s)	299, 654, 801, 838
BslFI	GGGAC	2 cut(s)	281, 523
BslI	CCNNNNNNNGG	1 cut(s)	557
BsmFI	GGGAC	2 cut(s)	281, 523
BsnI	GGCC	2 cut(s)	58, 198
BsoBI	CYCGRG	1 cut(s)	166
Bsp120I	GGGCCC	1 cut(s)	56
Bsp1286I	GDGCHC	5 cut(s)	60, 115, 173, 485, 688
Bsp13I	TCCGGA	2 cut(s)	298, 800
Bsp143I	GATC	6 cut(s)	43, 105, 154, 187, 433, 439
BspACI	CCGC	3 cut(s)	121, 219, 760
BspANI	GGCC	2 cut(s)	58, 198
BspCNI	CTCAG	1 cut(s)	804
BspEI	TCCGGA	2 cut(s)	298, 800
BspLI	GGNNCC	4 cut(s)	58, 482, 539, 663
BspPI	GGATC	2 cut(s)	100, 441
BspTI	CTTAAG	1 cut(s)	595
BsrFI	RCCGGY	1 cut(s)	653
BssAI	RCCGGY	1 cut(s)	653
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	6 cut(s)	43, 105, 154, 187, 433, 439
BssNI	GRCGYC	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	418
Bst4CI	ACNGT	1 cut(s)	747
Bst6I	CTCTTC	2 cut(s)	404, 558
BstACI	GRCGYC	1 cut(s)	213
BstAFI	CTTAAG	1 cut(s)	595
BstC8I	GCNNGC	1 cut(s)	698
BstDEI	CTNAG	3 cut(s)	542, 789, 812
BstDSI	CCRYGG	1 cut(s)	193
BstF5I	GGATG	1 cut(s)	253
BstKTI	GATC	6 cut(s)	46, 108, 157, 190, 436, 442
BstMBI	GATC	6 cut(s)	43, 105, 154, 187, 433, 439
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstNI	CCWGG	1 cut(s)	418
BstSCI	CCNGG	1 cut(s)	416
BstSLI	GKGCMC	2 cut(s)	60, 688
BstXI	CCANNNNNNTGG	1 cut(s)	206
BsuRI	GGCC	2 cut(s)	58, 198
BtgI	CCRYGG	1 cut(s)	193
BtgZI	GCGATG	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	253
Cac8I	GCNNGC	1 cut(s)	698
Cfr10I	RCCGGY	1 cut(s)	653
Cfr13I	GGNCC	4 cut(s)	56, 57, 414, 537
CsiI	ACCWGGT	1 cut(s)	416
CviAII	CATG	3 cut(s)	200, 315, 557
DdeI	CTNAG	3 cut(s)	542, 789, 812
DpnI	GATC	6 cut(s)	45, 107, 156, 189, 435, 441
DpnII	GATC	6 cut(s)	43, 105, 154, 187, 433, 439
EaeI	YGGCCR	1 cut(s)	196
Eam1104I	CTCTTC	2 cut(s)	404, 558
EarI	CTCTTC	2 cut(s)	404, 558
Eco24I	GRGCYC	4 cut(s)	60, 115, 173, 485
Eco47I	GGWCC	2 cut(s)	414, 537
Eco88I	CYCGRG	1 cut(s)	166
EcoO109I	RGGNCCY	1 cut(s)	537
EcoRII	CCWGG	1 cut(s)	416
EcoT38I	GRGCYC	4 cut(s)	60, 115, 173, 485
FaeI	CATG	3 cut(s)	203, 318, 560
FaqI	GGGAC	2 cut(s)	281, 523
FatI	CATG	3 cut(s)	199, 314, 556
FauI	CCCGC	1 cut(s)	128
FauNDI	CATATG	2 cut(s)	459, 848
FbaI	TGATCA	1 cut(s)	43
FokI	GGATG	1 cut(s)	260
FriOI	GRGCYC	4 cut(s)	60, 115, 173, 485
FspBI	CTAG	2 cut(s)	497, 521
GsaI	CCCAGC	1 cut(s)	577
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	2 cut(s)	58, 198
HapII	CCGG	4 cut(s)	299, 654, 801, 838
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	3 cut(s)	203, 318, 560
HincII	GTYRAC	1 cut(s)	423
HindII	GTYRAC	1 cut(s)	423
HinfI	GANTC	4 cut(s)	29, 74, 608, 808
HpaII	CCGG	4 cut(s)	299, 654, 801, 838
HphI	GGTGA	3 cut(s)	221, 233, 668
Hpy166II	GTNNAC	2 cut(s)	423, 686
Hpy188I	TCNGA	5 cut(s)	110, 132, 480, 666, 813
Hpy188III	TCNNGA	8 cut(s)	152, 166, 299, 437, 497, 614, 641, 801
Hpy8I	GTNNAC	2 cut(s)	423, 686
Hpy99I	CGWCG	2 cut(s)	129, 218
HpyAV	CCTTC	2 cut(s)	158, 257
HpyCH4III	ACNGT	1 cut(s)	747
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	3 cut(s)	287, 686, 743
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
HpyF3I	CTNAG	3 cut(s)	542, 789, 812
HpySE526I	ACGT	1 cut(s)	213
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	3 cut(s)	203, 318, 560
Kpn2I	TCCGGA	2 cut(s)	298, 800
Ksp22I	TGATCA	1 cut(s)	43
Kzo9I	GATC	6 cut(s)	43, 105, 154, 187, 433, 439
LmnI	GCTCC	4 cut(s)	480, 570, 762, 820
LweI	GCATC	2 cut(s)	609, 634
MabI	ACCWGGT	1 cut(s)	416
MaeI	CTAG	2 cut(s)	497, 521
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	2 cut(s)	209, 775
MalI	GATC	6 cut(s)	45, 107, 156, 189, 435, 441
MboI	GATC	6 cut(s)	43, 105, 154, 187, 433, 439
MboII	GAAGA	3 cut(s)	421, 545, 745
MhlI	GDGCHC	5 cut(s)	60, 115, 173, 485, 688
MlsI	TGGCCA	1 cut(s)	198
MluCI	AATT	7 cut(s)	18, 178, 255, 381, 465, 635, 702
MluNI	TGGCCA	1 cut(s)	198
MlyI	GAGTC	2 cut(s)	68, 602
Mox20I	TGGCCA	1 cut(s)	198
MroI	TCCGGA	2 cut(s)	298, 800
MscI	TGGCCA	1 cut(s)	198
MseI	TTAA	3 cut(s)	36, 380, 596
MslI	CAYNNNNRTG	1 cut(s)	204
Msp20I	TGGCCA	1 cut(s)	198
MspCI	CTTAAG	1 cut(s)	595
MspI	CCGG	4 cut(s)	299, 654, 801, 838
MspR9I	CCNGG	1 cut(s)	418
MvaI	CCWGG	1 cut(s)	418
MwoI	GCNNNNNNNGC	1 cut(s)	55
NdeI	CATATG	2 cut(s)	459, 848
NdeII	GATC	6 cut(s)	43, 105, 154, 187, 433, 439
NlaIII	CATG	3 cut(s)	203, 318, 560
NlaIV	GGNNCC	4 cut(s)	58, 482, 539, 663
NmuCI	GTSAC	1 cut(s)	209
PfeI	GAWTC	2 cut(s)	29, 808
PflFI	GACNNNGTC	1 cut(s)	418
PleI	GAGTC	2 cut(s)	68, 602
PpsI	GAGTC	2 cut(s)	68, 602
PpuMI	RGGWCCY	1 cut(s)	537
PsiI	TTATAA	1 cut(s)	719
Psp5II	RGGWCCY	1 cut(s)	537
Psp6I	CCWGG	1 cut(s)	416
PspFI	CCCAGC	1 cut(s)	573
PspGI	CCWGG	1 cut(s)	416
PspN4I	GGNNCC	4 cut(s)	58, 482, 539, 663
PspOMI	GGGCCC	1 cut(s)	56
PspPI	GGNCC	4 cut(s)	56, 57, 414, 537
PspPPI	RGGWCCY	1 cut(s)	537
PsrI	GAACNNNNNNTAC	2 cut(s)	768, 800
PsyI	GACNNNGTC	1 cut(s)	418
RseI	CAYNNNNRTG	1 cut(s)	204
SaqAI	TTAA	3 cut(s)	36, 380, 596
Sau3AI	GATC	6 cut(s)	43, 105, 154, 187, 433, 439
Sau96I	GGNCC	4 cut(s)	56, 57, 414, 537
SchI	GAGTC	2 cut(s)	68, 602
ScrFI	CCNGG	1 cut(s)	418
SduI	GDGCHC	5 cut(s)	60, 115, 173, 485, 688
SexAI	ACCWGGT	1 cut(s)	416
SfaNI	GCATC	2 cut(s)	609, 634
SinI	GGWCC	2 cut(s)	414, 537
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	595
SmoI	CTYRAG	1 cut(s)	595
Sse9I	AATT	7 cut(s)	18, 178, 255, 381, 465, 635, 702
SsiI	CCGC	3 cut(s)	121, 219, 760
SspI	AATATT	1 cut(s)	723
SspMI	CTAG	2 cut(s)	497, 521
StyD4I	CCNGG	1 cut(s)	416
TaaI	ACNGT	1 cut(s)	747
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	4 cut(s)	72, 153, 183, 606
TasI	AATT	7 cut(s)	18, 178, 255, 381, 465, 635, 702
TfiI	GAWTC	2 cut(s)	29, 808
Tru1I	TTAA	3 cut(s)	36, 380, 596
Tru9I	TTAA	3 cut(s)	36, 380, 596
TseFI	GTSAC	1 cut(s)	209
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	2 cut(s)	57, 545
Tth111I	GACNNNGTC	1 cut(s)	418
Vha464I	CTTAAG	1 cut(s)	595
VneI	GTGCAC	1 cut(s)	684
VpaK11BI	GGWCC	2 cut(s)	414, 537
XapI	RAATTY	2 cut(s)	18, 635
XbaI	TCTAGA	1 cut(s)	496
XspI	CTAG	2 cut(s)	497, 521
ZraI	GACGTC	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.