Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006188.1

Orthogroup ID

OG0004862

Physical Location & Seq

Genomic Coordinates Forward (+)

34056 .. 35594

Gene Structure 1539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006188.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1539 bp

atggaatctgcatttcttgagccttggtttttcgaaaattttatagactcatcttttgaccaacctgatttcatcaacatggatgatactccaattgatagcccagacttctcttctctgttcaactcaaatgaagttttcaaaatttcggaaattgcatcagacccttttgccaccctgtttcctggtgatgatctgattcaagtgacatcccaagtggaggaagtttcaatggatttggaagcatatgagactaatttgatgatagagggtttctatggtaattcattggaagggagtgaagggagttttccatcacagcaagcttcttcacaccaattttctgctgaaggaaatgatgtgtggagtccaaattcaatagtgaattctgaagcatcatcaatggactcaacatcaatccaatcaccactagatttgcctagagaagaggagcgaatcgagaaccaattgagtattcgtcatctacttcaagcttttgctgaagccaaggaatatggccagaaagatctagaggaggttattctcagatgcatcagtgagaaagtcagcccaattggagaggcttccgagcgccttgcattcaacttgtgccaagaagttgttgatgaacatcaacaaggcgacgattatctcaaacaagaatccttgaagaattttgaggctgcatttaaggtgttcatccaaaatttcccctatgctaggtttgctcactatgtagcaaactcagcaatcctcgaggcgattccagtggaagctgagacagttcacatagtggatttcgacatgagagaaggggtccagttgtctcaacttattgaggctttagcacaaagattcaaaattctaaaagtgacagcaatcaagtgggaagaggaagagagtgattgtgctcctccacacgggagatttgaggagacaaagaaacaactccagaaccatgctagatcctttgccttaaacttaaaggtggaagaagtagcaatggaggacttggtgactgagataaagaaggcaaagaagaggggtggagggaaagaattcttagccttcaactgtatggtttcacttccacacatgaggaggagaagaagcagagggcatgtcatggagtatctgagactggctaaggagttgttagccaattctgggaactccaagactactaaaagtggtattataactttcggtgatggggatgcttgtgagagactcggaaatcactcgagtttcagctcattctttaatgagaatctagtgcattaccaagccttgttggagtcaatggagttgaatttcccaggtcatctagcagaagcaagaatggcgatggaatgcatcttcatagcaccttttgtctcttcccaggcttggttccaaaagtggacagaaatgaaggactgccacgttcaaccatggttcgggcttgagggtcggagattgagcaaagaaaatttgatggaagccaaggaaattgtgggagatgaaagatcctatggaatcaggattgaaggactcaat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

513

Amino Acids

58.24

Weight (kDa)

4.72

Isoelectric Point (pI)

50.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004862)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g10940 FvH4_6g10950
malus_domestica	MD04G1163300.v1.1 MD04G1163400.v1.1 MD12G1176900.v1.1 MD12G1177000.v1.1 MD12G1177200.v1.1
prunus_persica	Prupe.6G282800_v2.0.a1
pyrus_communis	pycom04g14610 pycom12g16760
rosa_chinensis	RchiOBHm_Chr3g0462211 RchiOBHm_Chr3g0462231
rosa_laevigata	RLG00000024876 RLG00000024877
rosa_multiflora	Rmu_sc0006188.1_g000008 Rmu_sc0006715.1_g000002 Rmu_sc0007627.1_g000001 Rmu_sc0007627.1_g000002
rosa_roxburghii	Rroxscaffold_6G00417670 Rroxscaffold_6G00417680
rosa_rugosa	Rorug03G0055000 Rorug03G0055100
rosa_samantha	Rh3AG113800 Rh3BG116700 Rh3BG116800 Rh3CG119600 Rh3CG119700 Rh3DG118600 Rh3DG118700
rosa_wichuraiana	Rw3G009600 Rw3G009610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1199
AbsI	CCTCGAGG	1 cut(s)	755
AclWI	GGATC	2 cut(s)	960, 1503
AcoI	YGGCCR	1 cut(s)	517
AcuI	CTGAAG	3 cut(s)	369, 411, 522
AdeI	CACNNNGTG	1 cut(s)	793
AfiI	CCNNNNNNNGG	6 cut(s)	220, 720, 920, 1167, 1389, 1439
AjnI	CCWGG	3 cut(s)	184, 1318, 1383
AjuI	GAANNNNNNNTTGG	2 cut(s)	459, 491
AluBI	AGCT	4 cut(s)	326, 494, 776, 1254
AluI	AGCT	4 cut(s)	326, 494, 776, 1254
Alw21I	GWGCWC	1 cut(s)	913
Alw26I	GTCTC	7 cut(s)	245, 773, 831, 929, 1132, 1222, 1381
AlwI	GGATC	2 cut(s)	960, 1503
Ama87I	CYCGRG	2 cut(s)	755, 1243
AoxI	GGCC	1 cut(s)	517
ApeKI	GCWGC	1 cut(s)	683
ArsI	GACNNNNNNTTYG	2 cut(s)	38, 70
Asp700I	GAANNNNTTC	1 cut(s)	1058
AspLEI	GCGC	1 cut(s)	594
AspS9I	GGNCC	1 cut(s)	817
AsuHPI	GGTGA	4 cut(s)	200, 417, 1027, 1220
AsuII	TTCGAA	1 cut(s)	33
AvaI	CYCGRG	2 cut(s)	755, 1243
AvaII	GGWCC	1 cut(s)	817
BalI	TGGCCA	1 cut(s)	519
Bbv12I	GWGCWC	1 cut(s)	913
BbvI	GCAGC	1 cut(s)	670
BccI	CCATC	4 cut(s)	322, 1205, 1342, 1471
BcgI	CGANNNNNNTGC	2 cut(s)	578, 612
BciT130I	CCWGG	3 cut(s)	186, 1320, 1385
BcoDI	GTCTC	7 cut(s)	245, 773, 831, 929, 1132, 1222, 1381
BfaI	CTAG	7 cut(s)	431, 441, 530, 720, 963, 1274, 1328
BfoI	RGCGCY	1 cut(s)	595
BglII	AGATCT	1 cut(s)	526
BisI	GCNGC	1 cut(s)	684
BlsI	GCNGC	1 cut(s)	685
Bme1390I	CCNGG	3 cut(s)	186, 1320, 1385
Bme18I	GGWCC	1 cut(s)	817
BmeT110I	CYCGRG	2 cut(s)	755, 1243
BmgT120I	GGNCC	1 cut(s)	817
BmiI	GGNNCC	2 cut(s)	818, 1394
BmrFI	CCNGG	3 cut(s)	186, 1320, 1385
BmsI	GCATC	6 cut(s)	167, 404, 539, 561, 1207, 1365
BpmI	CTGGAG	1 cut(s)	935
Bpu10I	CCTNAGC	1 cut(s)	1146
Bpu14I	TTCGAA	1 cut(s)	33
BpuEI	CTTGAG	2 cut(s)	38, 1466
BsaBI	GATNNNNATC	1 cut(s)	630
BsaJI	CCNNGG	6 cut(s)	23, 507, 1318, 1383, 1433, 1485
Bsc4I	CCNNNNNNNGG	6 cut(s)	220, 720, 920, 1167, 1389, 1439
Bse1I	ACTGG	3 cut(s)	767, 820, 1146
Bse3DI	GCAATG	1 cut(s)	1008
Bse8I	GATNNNNATC	1 cut(s)	630
BseBI	CCWGG	3 cut(s)	186, 1320, 1385
BseDI	CCNNGG	6 cut(s)	23, 507, 1318, 1383, 1433, 1485
BseGI	GGATG	4 cut(s)	88, 209, 699, 1222
BseJI	GATNNNNATC	1 cut(s)	630
BseLI	CCNNNNNNNGG	6 cut(s)	220, 720, 920, 1167, 1389, 1439
BseMI	GCAATG	1 cut(s)	1008
BseMII	CTCAG	5 cut(s)	559, 759, 768, 1011, 1127
BseNI	ACTGG	3 cut(s)	767, 820, 1146
BseRI	GAGGAG	6 cut(s)	464, 548, 903, 947, 1114, 1117
BseXI	GCAGC	1 cut(s)	670
BshFI	GGCC	1 cut(s)	519
BsiHKAI	GWGCWC	1 cut(s)	913
BsiHKCI	CYCGRG	2 cut(s)	755, 1243
BslI	CCNNNNNNNGG	6 cut(s)	220, 720, 920, 1167, 1389, 1439
BsmAI	GTCTC	7 cut(s)	245, 773, 831, 929, 1132, 1222, 1381
BsmI	GAATGC	2 cut(s)	599, 1358
BsnI	GGCC	1 cut(s)	519
BsoBI	CYCGRG	2 cut(s)	755, 1243
Bsp119I	TTCGAA	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	913
Bsp143I	GATC	4 cut(s)	193, 526, 965, 1508
Bsp19I	CCATGG	1 cut(s)	1433
BspANI	GGCC	1 cut(s)	519
BspCNI	CTCAG	5 cut(s)	558, 758, 769, 1012, 1128
BspLI	GGNNCC	2 cut(s)	818, 1394
BspPI	GGATC	2 cut(s)	960, 1503
BspT104I	TTCGAA	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	1008
BsrI	ACTGG	3 cut(s)	767, 820, 1146
BssECI	CCNNGG	6 cut(s)	23, 507, 1318, 1383, 1433, 1485
BssMI	GATC	4 cut(s)	193, 526, 965, 1508
BssT1I	CCWWGG	4 cut(s)	23, 507, 1433, 1485
Bst2UI	CCWGG	3 cut(s)	186, 1320, 1385
Bst4CI	ACNGT	2 cut(s)	784, 1076
Bst6I	CTCTTC	6 cut(s)	118, 441, 885, 891, 1034, 1384
BstBI	TTCGAA	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	7 cut(s)	545, 745, 777, 1020, 1063, 1136, 1146
BstDSI	CCRYGG	1 cut(s)	1433
BstENI	CCTNNNNNAGG	1 cut(s)	718
BstF5I	GGATG	4 cut(s)	88, 209, 699, 1222
BstH2I	RGCGCY	1 cut(s)	595
BstHHI	GCGC	1 cut(s)	594
BstKTI	GATC	4 cut(s)	196, 529, 968, 1511
BstMAI	GTCTC	7 cut(s)	245, 773, 831, 929, 1132, 1222, 1381
BstMBI	GATC	4 cut(s)	193, 526, 965, 1508
BstMWI	GCNNNNNNNGC	3 cut(s)	725, 746, 1343
BstNI	CCWGG	3 cut(s)	186, 1320, 1385
BstNSI	RCATGY	1 cut(s)	1124
BstSCI	CCNGG	3 cut(s)	184, 1318, 1383
BstV1I	GCAGC	1 cut(s)	670
BstX2I	RGATCY	3 cut(s)	526, 965, 1508
BstYI	RGATCY	3 cut(s)	526, 965, 1508
BsuRI	GGCC	1 cut(s)	519
BtgI	CCRYGG	1 cut(s)	1433
BtgZI	GCGATG	1 cut(s)	1361
BtsCI	GGATG	4 cut(s)	88, 209, 699, 1222
BtsIMutI	CAGTG	2 cut(s)	562, 774
Cac8I	GCNNGC	1 cut(s)	324
CfoI	GCGC	1 cut(s)	594
Cfr13I	GGNCC	1 cut(s)	817
CspCI	CAANNNNNGTGG	2 cut(s)	417, 452
CviAII	CATG	7 cut(s)	79, 805, 959, 1096, 1121, 1126, 1434
DdeI	CTNAG	7 cut(s)	545, 745, 777, 1020, 1063, 1136, 1146
DpnI	GATC	4 cut(s)	195, 528, 967, 1510
DpnII	GATC	4 cut(s)	193, 526, 965, 1508
DraIII	CACNNNGTG	1 cut(s)	793
EaeI	YGGCCR	1 cut(s)	517
Eam1104I	CTCTTC	6 cut(s)	118, 441, 885, 891, 1034, 1384
EarI	CTCTTC	6 cut(s)	118, 441, 885, 891, 1034, 1384
Eco130I	CCWWGG	4 cut(s)	23, 507, 1433, 1485
Eco47I	GGWCC	1 cut(s)	817
Eco57I	CTGAAG	3 cut(s)	369, 411, 522
Eco88I	CYCGRG	2 cut(s)	755, 1243
EcoNI	CCTNNNNNAGG	1 cut(s)	718
EcoRI	GAATTC	2 cut(s)	385, 1058
EcoRII	CCWGG	3 cut(s)	184, 1318, 1383
EcoT14I	CCWWGG	4 cut(s)	23, 507, 1433, 1485
EcoT22I	ATGCAT	2 cut(s)	554, 1358
ErhI	CCWWGG	4 cut(s)	23, 507, 1433, 1485
FaeI	CATG	7 cut(s)	82, 808, 962, 1099, 1124, 1129, 1437
FatI	CATG	7 cut(s)	78, 804, 958, 1095, 1120, 1125, 1433
FauNDI	CATATG	1 cut(s)	247
Fnu4HI	GCNGC	1 cut(s)	684
FokI	GGATG	4 cut(s)	95, 196, 686, 1229
Fsp4HI	GCNGC	1 cut(s)	684
FspBI	CTAG	7 cut(s)	431, 441, 530, 720, 963, 1274, 1328
GlaI	GCGC	1 cut(s)	593
GluI	GCNGC	1 cut(s)	684
GsuI	CTGGAG	1 cut(s)	935
HaeII	RGCGCY	1 cut(s)	595
HaeIII	GGCC	1 cut(s)	519
HhaI	GCGC	1 cut(s)	594
Hin1II	CATG	7 cut(s)	82, 808, 962, 1099, 1124, 1129, 1437
Hin6I	GCGC	1 cut(s)	592
HinP1I	GCGC	1 cut(s)	592
HindIII	AAGCTT	2 cut(s)	324, 492
HphI	GGTGA	4 cut(s)	200, 417, 1027, 1220
Hpy166II	GTNNAC	2 cut(s)	787, 1404
Hpy188I	TCNGA	9 cut(s)	151, 163, 198, 391, 548, 589, 1137, 1235, 1455
Hpy188III	TCNNGA	5 cut(s)	17, 460, 530, 952, 1522
Hpy8I	GTNNAC	2 cut(s)	787, 1404
Hpy99I	CGWCG	1 cut(s)	647
HpyAV	CCTTC	8 cut(s)	287, 296, 344, 806, 1024, 1078, 1408, 1523
HpyCH4III	ACNGT	2 cut(s)	784, 1076
HpyCH4IV	ACGT	1 cut(s)	1425
HpyCH4V	TGCA	7 cut(s)	11, 158, 552, 599, 686, 1279, 1356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	725, 746, 1343
HpyF3I	CTNAG	7 cut(s)	545, 745, 777, 1020, 1063, 1136, 1146
HpySE526I	ACGT	1 cut(s)	1425
Hsp92II	CATG	7 cut(s)	82, 808, 962, 1099, 1124, 1129, 1437
HspAI	GCGC	1 cut(s)	592
Kzo9I	GATC	4 cut(s)	193, 526, 965, 1508
LmnI	GCTCC	2 cut(s)	451, 916
Lsp1109I	GCAGC	1 cut(s)	670
LweI	GCATC	6 cut(s)	167, 404, 539, 561, 1207, 1365
MaeI	CTAG	7 cut(s)	431, 441, 530, 720, 963, 1274, 1328
MaeII	ACGT	1 cut(s)	1425
MaeIII	GTNAC	3 cut(s)	205, 871, 1015
MalI	GATC	4 cut(s)	195, 528, 967, 1510
MboI	GATC	4 cut(s)	193, 526, 965, 1508
MfeI	CAATTG	3 cut(s)	93, 467, 573
MflI	RGATCY	3 cut(s)	526, 965, 1508
MhlI	GDGCHC	1 cut(s)	913
MlsI	TGGCCA	1 cut(s)	519
MluNI	TGGCCA	1 cut(s)	519
MlyI	GAGTC	6 cut(s)	41, 376, 401, 1224, 1307, 1527
MmeI	TCCRAC	2 cut(s)	1275, 1433
Mox20I	TGGCCA	1 cut(s)	519
Mph1103I	ATGCAT	2 cut(s)	554, 1358
MroXI	GAANNNNTTC	1 cut(s)	1058
MscI	TGGCCA	1 cut(s)	519
MseI	TTAA	4 cut(s)	690, 977, 983, 1263
MslI	CAYNNNNRTG	1 cut(s)	77
Msp20I	TGGCCA	1 cut(s)	519
MspR9I	CCNGG	3 cut(s)	186, 1320, 1385
MunI	CAATTG	3 cut(s)	93, 467, 573
Mva1269I	GAATGC	2 cut(s)	599, 1358
MvaI	CCWGG	3 cut(s)	186, 1320, 1385
MwoI	GCNNNNNNNGC	3 cut(s)	725, 746, 1343
NcoI	CCATGG	1 cut(s)	1433
NdeI	CATATG	1 cut(s)	247
NdeII	GATC	4 cut(s)	193, 526, 965, 1508
NlaIII	CATG	7 cut(s)	82, 808, 962, 1099, 1124, 1129, 1437
NlaIV	GGNNCC	2 cut(s)	818, 1394
NmuCI	GTSAC	3 cut(s)	205, 871, 1015
NsiI	ATGCAT	2 cut(s)	554, 1358
NspI	RCATGY	1 cut(s)	1124
NspV	TTCGAA	1 cut(s)	33
PaeR7I	CTCGAG	2 cut(s)	755, 1243
PctI	GAATGC	2 cut(s)	599, 1358
PdmI	GAANNNNTTC	1 cut(s)	1058
PfeI	GAWTC	8 cut(s)	5, 199, 456, 662, 763, 855, 1270, 1518
PkrI	GCNGC	1 cut(s)	685
PleI	GAGTC	6 cut(s)	41, 375, 401, 1224, 1306, 1527
PpsI	GAGTC	6 cut(s)	41, 375, 401, 1224, 1306, 1527
PsiI	TTATAA	1 cut(s)	1199
Psp6I	CCWGG	3 cut(s)	184, 1318, 1383
PspGI	CCWGG	3 cut(s)	184, 1318, 1383
PspN4I	GGNNCC	2 cut(s)	818, 1394
PspPI	GGNCC	1 cut(s)	817
PspXI	VCTCGAGB	2 cut(s)	755, 1243
PsuI	RGATCY	3 cut(s)	526, 965, 1508
RseI	CAYNNNNRTG	1 cut(s)	77
SaqAI	TTAA	4 cut(s)	690, 977, 983, 1263
SatI	GCNGC	1 cut(s)	684
Sau3AI	GATC	4 cut(s)	193, 526, 965, 1508
Sau96I	GGNCC	1 cut(s)	817
SchI	GAGTC	6 cut(s)	41, 376, 401, 1224, 1307, 1527
ScrFI	CCNGG	3 cut(s)	186, 1320, 1385
SduI	GDGCHC	1 cut(s)	913
SfaNI	GCATC	6 cut(s)	167, 404, 539, 561, 1207, 1365
Sfr274I	CTCGAG	2 cut(s)	755, 1243
SfuI	TTCGAA	1 cut(s)	33
SinI	GGWCC	1 cut(s)	817
SlaI	CTCGAG	2 cut(s)	755, 1243
SmiMI	CAYNNNNRTG	1 cut(s)	77
SmlI	CTYRAG	4 cut(s)	17, 755, 1243, 1445
SmoI	CTYRAG	4 cut(s)	17, 755, 1243, 1445
SspMI	CTAG	7 cut(s)	431, 441, 530, 720, 963, 1274, 1328
StyD4I	CCNGG	3 cut(s)	184, 1318, 1383
StyI	CCWWGG	4 cut(s)	23, 507, 1433, 1485
TaaI	ACNGT	2 cut(s)	784, 1076
TaiI	ACGT	1 cut(s)	1428
TaqI	TCGA	5 cut(s)	33, 459, 756, 801, 1244
TfiI	GAWTC	8 cut(s)	5, 199, 456, 662, 763, 855, 1270, 1518
Tru1I	TTAA	4 cut(s)	690, 977, 983, 1263
Tru9I	TTAA	4 cut(s)	690, 977, 983, 1263
TscAI	CASTG	2 cut(s)	562, 774
TseFI	GTSAC	3 cut(s)	205, 871, 1015
TseI	GCWGC	1 cut(s)	683
Tsp45I	GTSAC	3 cut(s)	205, 871, 1015
TspDTI	ATGAA	8 cut(s)	61, 147, 276, 642, 688, 1351, 1427, 1518
TspRI	CASTG	2 cut(s)	562, 774
VpaK11BI	GGWCC	1 cut(s)	817
XagI	CCTNNNNNAGG	1 cut(s)	718
XbaI	TCTAGA	1 cut(s)	529
XceI	RCATGY	1 cut(s)	1124
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1492
XhoI	CTCGAG	2 cut(s)	755, 1243
XmnI	GAANNNNTTC	1 cut(s)	1058
XspI	CTAG	7 cut(s)	431, 441, 530, 720, 963, 1274, 1328
Zsp2I	ATGCAT	2 cut(s)	554, 1358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.