Rorug03G0055000

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0004862
Physical Location & Seq
Forward (+)
4218927 .. 4221446
2520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0055000.1

Sequence Viewer

Length: 825 bp
ATGGCACAGGAGCAAGAGTTGAATGCGTGCAGCTCTTCTGCTTTTCCATCTTCAGAGGATTCGAATCCTTGTCCCATCTGCCTCGCACCCATCTTTCGACTTTCTTATCTTGACAAATGTTTCCATAAATTCTGTTACAAATGCATATTACAATGGACCAGAGTTGTTGCTAGCAAACAGTCTGACCCGTCTTCCTCCGTAAAATGTCCTTTGTGCAAGACAGATAATTTTTCGATTATACATGGATATGATGGATGTTCGTTTCAAAAGCACTACATCAACCAGGATTCAGGGAATTGCTTTGTCTTATCAAGTGCTCACAAGTATAGGTTACAGTGCTATTATACTGAACCAGGTTTCTTAGATGACATTTTTGATGCATCACGGTATTGGAAGTCCTTTAAGTATCTTCAGCCAAACTGTTGGCTTCAAAGTTGGTTGAGAAGGGAAATCCAAGCTCTTATGCAGGAAGAAGATGTTGACATCATCATGCACCACATATTTGGCGTGATTAAATCTCTCATGAGTCATAAGCAAAAATGTCAGACGATAACATGTGAAGCAAAACAAAGAGAATTTCAAGAGGCAATCTCCGATGCAGCAAGGCCTTTCCTAGCCACAAGAACTGACCGATTTGTGAATGAGGTGGAACTATTTCTTGCTTCAGGTTTAAACATTGAAGCATATGATGCTGTGTGCATTCAGCGTTTAGGTTGGAGTGCTCGCGGAGTAACTACTGAGGCCACTGCAGAAGGAGAAATTGCCGAGCACAGACCTGTTATCCCTTACTTGCATATTTTTGATGACTTTGACAGCAGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

274

Amino Acids

31.48

Weight (kDa)

5.6

Isoelectric Point (pI)

64.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4 PF00097 24 - 72 1.5e-08 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 726
AciI CCGC 1 cut(s) 726
AcsI RAATTY 2 cut(s) 128, 575
AcuI CTGAAG 3 cut(s) 36, 395, 648
AflIII ACRYGT 1 cut(s) 554
AgsI TTSAA 5 cut(s) 22, 266, 431, 581, 680
AjnI CCWGG 2 cut(s) 282, 352
AluBI AGCT 2 cut(s) 33, 458
AluI AGCT 2 cut(s) 33, 458
Alw21I GWGCWC 3 cut(s) 319, 724, 771
AoxI GGCC 2 cut(s) 605, 741
ApeKI GCWGC 2 cut(s) 30, 599
ApoI RAATTY 2 cut(s) 128, 575
Asp700I GAANNNNTTC 1 cut(s) 654
AspS9I GGNCC 1 cut(s) 156
AsuII TTCGAA 1 cut(s) 62
AsuNHI GCTAGC 1 cut(s) 170
AvaII GGWCC 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 3 cut(s) 319, 724, 771
BbvI GCAGC 2 cut(s) 42, 611
BccI CCATC 4 cut(s) 55, 83, 98, 245
BciT130I CCWGG 2 cut(s) 284, 354
BfaI CTAG 2 cut(s) 171, 614
BfmI CTRYAG 1 cut(s) 747
BisI GCNGC 2 cut(s) 31, 600
BlsI GCNGC 2 cut(s) 32, 601
Bme1390I CCNGG 2 cut(s) 284, 354
Bme18I GGWCC 1 cut(s) 156
BmgT120I GGNCC 1 cut(s) 156
BmrFI CCNGG 2 cut(s) 284, 354
BmsI GCATC 4 cut(s) 367, 389, 586, 679
BmtI GCTAGC 1 cut(s) 174
BpiI GAAGAC 1 cut(s) 183
BplI GAGNNNNNCTC 2 cut(s) 575, 607
Bpu14I TTCGAA 1 cut(s) 62
BsaBI GATNNNNATC 1 cut(s) 63
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bse8I GATNNNNATC 1 cut(s) 63
BseBI CCWGG 2 cut(s) 284, 354
BseGI GGATG 1 cut(s) 260
BseJI GATNNNNATC 1 cut(s) 63
BseMII CTCAG 1 cut(s) 729
BseXI GCAGC 2 cut(s) 42, 611
BsgI GTGCAG 1 cut(s) 49
Bsh1236I CGCG 1 cut(s) 726
BshFI GGCC 2 cut(s) 607, 743
BsiHKAI GWGCWC 3 cut(s) 319, 724, 771
BslFI GGGAC 1 cut(s) 57
BsmFI GGGAC 1 cut(s) 57
BsmI GAATGC 2 cut(s) 28, 699
BsnI GGCC 2 cut(s) 607, 743
Bsp119I TTCGAA 1 cut(s) 62
Bsp1286I GDGCHC 3 cut(s) 319, 724, 771
BspACI CCGC 1 cut(s) 726
BspANI GGCC 2 cut(s) 607, 743
BspCNI CTCAG 1 cut(s) 730
BspFNI CGCG 1 cut(s) 726
BspHI TCATGA 1 cut(s) 522
BspMAI CTGCAG 1 cut(s) 751
BspOI GCTAGC 1 cut(s) 174
BspQI GCTCTTC 1 cut(s) 40
BspT104I TTCGAA 1 cut(s) 62
Bst2UI CCWGG 2 cut(s) 284, 354
Bst4CI ACNGT 4 cut(s) 180, 336, 387, 422
Bst6I CTCTTC 1 cut(s) 40
BstAPI GCANNNNNTGC 1 cut(s) 689
BstBI TTCGAA 1 cut(s) 62
BstC8I GCNNGC 3 cut(s) 28, 172, 724
BstDEI CTNAG 2 cut(s) 361, 738
BstF5I GGATG 1 cut(s) 260
BstFNI CGCG 1 cut(s) 726
BstMWI GCNNNNNNNGC 1 cut(s) 689
BstNI CCWGG 2 cut(s) 284, 354
BstNSI RCATGY 1 cut(s) 558
BstSCI CCNGG 2 cut(s) 282, 352
BstSFI CTRYAG 1 cut(s) 747
BstUI CGCG 1 cut(s) 726
BstV1I GCAGC 2 cut(s) 42, 611
BstV2I GAAGAC 1 cut(s) 183
BstXI CCANNNNNNTGG 2 cut(s) 423, 503
BsuRI GGCC 2 cut(s) 607, 743
BtsCI GGATG 1 cut(s) 260
BtsI GCAGTG 2 cut(s) 744, 823
BtsIMutI CAGTG 3 cut(s) 341, 744, 823
Cac8I GCNNGC 3 cut(s) 28, 172, 724
CciI TCATGA 1 cut(s) 522
Cfr13I GGNCC 1 cut(s) 156
CsiI ACCWGGT 1 cut(s) 352
CviAII CATG 4 cut(s) 242, 490, 523, 555
CviJI RGCY 7 cut(s) 33, 415, 427, 458, 607, 617, 743
CviKI_1 RGCY 7 cut(s) 33, 415, 427, 458, 607, 617, 743
DdeI CTNAG 2 cut(s) 361, 738
DraI TTTAAA 1 cut(s) 672
Eam1104I CTCTTC 1 cut(s) 40
EarI CTCTTC 1 cut(s) 40
Eco147I AGGCCT 1 cut(s) 607
Eco47I GGWCC 1 cut(s) 156
Eco57I CTGAAG 3 cut(s) 36, 395, 648
EcoRII CCWGG 2 cut(s) 282, 352
EcoT22I ATGCAT 2 cut(s) 146, 382
FaeI CATG 4 cut(s) 245, 493, 526, 558
FaqI GGGAC 1 cut(s) 57
FatI CATG 4 cut(s) 241, 489, 522, 554
FauNDI CATATG 1 cut(s) 685
Fnu4HI GCNGC 2 cut(s) 31, 600
FokI GGATG 1 cut(s) 267
Fsp4HI GCNGC 2 cut(s) 31, 600
FspBI CTAG 2 cut(s) 171, 614
GluI GCNGC 2 cut(s) 31, 600
HaeIII GGCC 2 cut(s) 607, 743
Hin1II CATG 4 cut(s) 245, 493, 526, 558
HincII GTYRAC 1 cut(s) 481
HindII GTYRAC 1 cut(s) 481
HinfI GANTC 4 cut(s) 59, 64, 287, 526
Hpy166II GTNNAC 1 cut(s) 481
Hpy188I TCNGA 4 cut(s) 55, 184, 546, 595
Hpy188III TCNNGA 3 cut(s) 110, 523, 581
Hpy8I GTNNAC 1 cut(s) 481
HpyAV CCTTC 2 cut(s) 438, 746
HpyCH4III ACNGT 4 cut(s) 180, 336, 387, 422
HpyF10VI GCNNNNNNNGC 1 cut(s) 689
HpyF3I CTNAG 2 cut(s) 361, 738
Hsp92II CATG 4 cut(s) 245, 493, 526, 558
LguI GCTCTTC 1 cut(s) 40
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 9 cut(s) 172, 269, 276, 296, 339, 366, 452, 651, 789
Lsp1109I GCAGC 2 cut(s) 42, 611
LweI GCATC 4 cut(s) 367, 389, 586, 679
MabI ACCWGGT 1 cut(s) 352
MaeI CTAG 2 cut(s) 171, 614
MaeIII GTNAC 3 cut(s) 134, 330, 730
MboII GAAGA 6 cut(s) 27, 42, 183, 401, 482, 485
MhlI GDGCHC 3 cut(s) 319, 724, 771
MluCI AATT 5 cut(s) 128, 226, 295, 575, 759
MlyI GAGTC 1 cut(s) 535
MmeI TCCRAC 1 cut(s) 695
MnlI CCTC 6 cut(s) 49, 92, 205, 577, 637, 733
Mph1103I ATGCAT 2 cut(s) 146, 382
MroXI GAANNNNTTC 1 cut(s) 654
MseI TTAA 3 cut(s) 402, 513, 671
MslI CAYNNNNRTG 2 cut(s) 246, 488
MspR9I CCNGG 2 cut(s) 284, 354
MssI GTTTAAAC 1 cut(s) 672
Mva1269I GAATGC 2 cut(s) 28, 699
MvaI CCWGG 2 cut(s) 284, 354
MvnI CGCG 1 cut(s) 726
MwoI GCNNNNNNNGC 1 cut(s) 689
NdeI CATATG 1 cut(s) 685
NheI GCTAGC 1 cut(s) 170
NlaIII CATG 4 cut(s) 245, 493, 526, 558
NmeAIII GCCGAG 1 cut(s) 790
NsiI ATGCAT 2 cut(s) 146, 382
NspI RCATGY 1 cut(s) 558
NspV TTCGAA 1 cut(s) 62
PagI TCATGA 1 cut(s) 522
PceI AGGCCT 1 cut(s) 607
PciI ACATGT 1 cut(s) 554
PciSI GCTCTTC 1 cut(s) 40
PctI GAATGC 2 cut(s) 28, 699
PdmI GAANNNNTTC 1 cut(s) 654
PfeI GAWTC 3 cut(s) 59, 64, 287
PkrI GCNGC 2 cut(s) 32, 601
PleI GAGTC 1 cut(s) 534
PmeI GTTTAAAC 1 cut(s) 672
PpsI GAGTC 1 cut(s) 534
PscI ACATGT 1 cut(s) 554
Psp6I CCWGG 2 cut(s) 282, 352
PspGI CCWGG 2 cut(s) 282, 352
PspPI GGNCC 1 cut(s) 156
PstI CTGCAG 1 cut(s) 751
RseI CAYNNNNRTG 2 cut(s) 246, 488
SapI GCTCTTC 1 cut(s) 40
SaqAI TTAA 3 cut(s) 402, 513, 671
SatI GCNGC 2 cut(s) 31, 600
Sau96I GGNCC 1 cut(s) 156
SchI GAGTC 1 cut(s) 535
ScrFI CCNGG 2 cut(s) 284, 354
SduI GDGCHC 3 cut(s) 319, 724, 771
SetI ASST 8 cut(s) 35, 332, 358, 460, 648, 670, 715, 778
SexAI ACCWGGT 1 cut(s) 352
SfaNI GCATC 4 cut(s) 367, 389, 586, 679
SfcI CTRYAG 1 cut(s) 747
SfuI TTCGAA 1 cut(s) 62
SinI GGWCC 1 cut(s) 156
SmiMI CAYNNNNRTG 2 cut(s) 246, 488
Sse9I AATT 5 cut(s) 128, 226, 295, 575, 759
SseBI AGGCCT 1 cut(s) 607
SsiI CCGC 1 cut(s) 726
SspMI CTAG 2 cut(s) 171, 614
StuI AGGCCT 1 cut(s) 607
StyD4I CCNGG 2 cut(s) 282, 352
TaaI ACNGT 4 cut(s) 180, 336, 387, 422
TaqI TCGA 3 cut(s) 62, 97, 233
TaqII GACCGA 1 cut(s) 645
TasI AATT 5 cut(s) 128, 226, 295, 575, 759
TfiI GAWTC 3 cut(s) 59, 64, 287
Tru1I TTAA 3 cut(s) 402, 513, 671
Tru9I TTAA 3 cut(s) 402, 513, 671
TscAI CASTG 3 cut(s) 341, 751, 823
TseI GCWGC 2 cut(s) 30, 599
TspGWI ACGGA 1 cut(s) 187
TspRI CASTG 3 cut(s) 341, 751, 823
VpaK11BI GGWCC 1 cut(s) 156
XapI RAATTY 2 cut(s) 128, 575
XceI RCATGY 1 cut(s) 558
XmnI GAANNNNTTC 1 cut(s) 654
XspI CTAG 2 cut(s) 171, 614
Zsp2I ATGCAT 2 cut(s) 146, 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.