Rmu_sc0006314.1_g000019

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006314.1
Physical Location & Seq
Reverse (-)
82547 .. 86500
3954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006314.1_g000019.1.cds

Sequence Viewer

Length: 2280 bp
atgggtactgatgctgctgaagtagtagggacagagagaaagcctaattcctttaaggttcaccgttcaatgtgcattgaactttggaaggtggtggagagaatttcaaagatatttcccgacatagaagcagcaagacctcgttgctcaacgggaatacaggctctatgcatgttgaatcgtgcaattgagaaagccaagcaacttgttcagtattgcagcgagtctagcaaactctacctggcgtgtacaggggatgtgatagtctcaagatgtcaaaaatcaaggaacttgttggagcaaagtttgtgccagattcagagttgggttccagtgattttggtggcagagatctctaaaatagttgatgatcttaaggctgcaacatttagactgcatccatctgaagaagaggctgggaaggtcatccgagaattgctccaccaagatgcttctgcatcaaattcaagagaagattctgaactcaaggctcttcaacttgcatctttgaggctccgtattaccacatcaaaggaagtcttaatagagagaagatctattaagaagttgctacaaaaagttggtgacagtgaccctcgaaaaaagcagatcttgacatatttcttgtatctattgaagaagtatggaaacttaatattggtaaagcaaacagagagtgcccctgtgtggcaacaaggatcacttgcttctgagaattctggcaacgactttggatataatcagtatgctgaagttgaacctcacactggttatggggaatatgaggcacaaagtaacatgttgcttggagctgtacctcctcaagaatttttgtgcgggatatcttccaggttgatgtacgatcctgttgtcattgcttctggacaaacatatgaaaggatgtggatacagaagtggtttaatgagggaaatgatacatgcccaaaaactaataccaaactggcccacctttcattgactccaaacgttggcatgaaggagttgatatcaaggtggtgtacggagtctggagtcaccatccccaacccaagtatgcaaccagaagcacttggctcatgggaaaactcttccacttccattgctagtttaggcagttctatgaatgatctacgtctacaaatggatctcagcactatgtcatttggatccttagataccagtttcaattctaagacagaagatggctcaaatctggtgcagattgatgatgattctctgaaataccgatctgctcaaaaatgcgagacagatttggaatttctatctaatattagtaagctcaaatgggattcccaacgcaaggctgttaaagatgttaaaaacgatttgaaacgcaatcctcaagcttcttatgctatgtcctctaagaattttgttgaacctctcatcaaatttttgagggatgcatacggtcaggatgatgtagaggctcagagcgatggatttaaattattatctacctttgtcagcaaaaacagaaacgggatatgttatttaggtgaagacgtgtatagtctgttagtatcttctcttgattcagaggtaaaggaagaaggtcttgccataatggaaattctgtctgtccaccaggactgcagaggtaacatctcatcatctggtgctcttacatccattctaaaacttctagactctcagagcagaagtatacaagaaaaagcccttaaaattttgcacaatttgtccttagatagagatatttgttcagtgatggtatctttggagtgcatcccaaaattggttcctttctttgaagacagtgctcttactggaaactgtatcgctatattgaaaaatctaagcgattatgaaggggccaggatttctattgctgaaactgatggatgcattgcttctgttgtttatgtcctagacactggcagtaaagagcatcaagagcatgctgttgatatccttctttctttatgctctcagcgcattgactattgtaacttggtcatgcatgagggtgtaattcctgctcttgtcctctcatctaccaatgggacagagagaacgaggataaacgcaatggaagttctacgtctcttgagagatattgattatgacaatgagcaagaaactgctgaacctgagcctgaggcagctagagatgagctacctagagacaatggaaatcactcgaacgggaagaaagcttccaaggcatcaggatttttctcaaagaagttatcaatattctcaaaaccgagttctcaatcaccgaaaaagaagaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

759

Amino Acids

84.53

Weight (kDa)

5.86

Isoelectric Point (pI)

44.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 989
AccI GTMKAC 2 cut(s) 1135, 1687
AciI CCGC 1 cut(s) 837
AclI AACGTT 1 cut(s) 987
AclWI GGATC 5 cut(s) 706, 857, 1152, 1161, 1174
AcsI RAATTY 9 cut(s) 102, 463, 715, 827, 1277, 1390, 1412, 1593, 1707
AcuI CTGAAG 3 cut(s) 39, 426, 771
AfaI GTAC 5 cut(s) 7, 250, 816, 860, 1021
AfiI CCNNNNNNNGG 5 cut(s) 687, 767, 989, 1321, 1777
AflII CTTAAG 1 cut(s) 374
AflIII ACRYGT 2 cut(s) 798, 1527
AjiI CACGTC 1 cut(s) 1528
AjnI CCWGG 4 cut(s) 240, 848, 1608, 1856
AluBI AGCT 6 cut(s) 812, 1300, 1367, 2147, 2158, 2198
AluI AGCT 6 cut(s) 812, 1300, 1367, 2147, 2158, 2198
Alw21I GWGCWC 2 cut(s) 1645, 1804
Alw26I GTCTC 4 cut(s) 271, 1259, 2090, 2160
AlwI GGATC 5 cut(s) 706, 857, 1152, 1161, 1174
AoxI GGCC 2 cut(s) 963, 1854
ApeKI GCWGC 5 cut(s) 14, 131, 219, 380, 2144
ApoI RAATTY 9 cut(s) 102, 463, 715, 827, 1277, 1390, 1412, 1593, 1707
AspLEI GCGC 1 cut(s) 1977
AspS9I GGNCC 2 cut(s) 964, 1854
AsuHPI GGTGA 5 cut(s) 53, 596, 1027, 1532, 2253
AxyI CCTNAGG 1 cut(s) 2139
BaeGI GKGCMC 1 cut(s) 682
BaeI ACNNNNGTAYC 2 cut(s) 899, 932
BamHI GGATCC 1 cut(s) 1166
BbsI GAAGAC 2 cut(s) 1530, 1800
Bbv12I GWGCWC 2 cut(s) 1645, 1804
BbvI GCAGC 4 cut(s) 143, 231, 367, 2156
BccI CCATC 6 cut(s) 409, 1046, 1196, 1454, 1744, 1874
BciT130I CCWGG 4 cut(s) 242, 850, 1610, 1858
BciVI GTATCC 1 cut(s) 900
BcoDI GTCTC 4 cut(s) 271, 1259, 2090, 2160
BfaI CTAG 6 cut(s) 228, 1104, 1667, 1910, 2148, 2163
BfmI CTRYAG 1 cut(s) 1615
BfrI CTTAAG 1 cut(s) 374
BfuI GTATCC 1 cut(s) 900
BglII AGATCT 3 cut(s) 351, 554, 609
BisI GCNGC 5 cut(s) 15, 132, 220, 381, 2145
BlsI GCNGC 5 cut(s) 16, 133, 221, 382, 2146
Bme1390I CCNGG 4 cut(s) 242, 850, 1610, 1858
BmgBI CACGTC 1 cut(s) 1528
BmgT120I GGNCC 2 cut(s) 964, 1854
BmiI GGNNCC 5 cut(s) 330, 515, 1168, 1782, 1855
BmrFI CCNGG 4 cut(s) 242, 850, 1610, 1858
BmsI GCATC 9 cut(s) 406, 439, 467, 512, 1414, 1776, 1874, 1939, 2216
BpiI GAAGAC 2 cut(s) 1530, 1800
BplI GAGNNNNNCTC 2 cut(s) 423, 455
BpmI CTGGAG 1 cut(s) 1050
Bpu10I CCTNAGC 1 cut(s) 2133
BpuEI CTTGAG 5 cut(s) 253, 470, 807, 1347, 2110
BsaJI CCNNGG 1 cut(s) 2202
Bsc4I CCNNNNNNNGG 5 cut(s) 687, 767, 989, 1321, 1777
Bse1I ACTGG 6 cut(s) 332, 772, 966, 1179, 1813, 1921
Bse21I CCTNAGG 1 cut(s) 2139
Bse3DI GCAATG 4 cut(s) 873, 1098, 1887, 2076
BseBI CCWGG 4 cut(s) 242, 850, 1610, 1858
BseDI CCNNGG 1 cut(s) 2202
BseLI CCNNNNNNNGG 5 cut(s) 687, 767, 989, 1321, 1777
BseMI GCAATG 4 cut(s) 873, 1098, 1887, 2076
BseMII CTCAG 7 cut(s) 702, 1162, 1466, 1688, 1985, 2124, 2130
BseNI ACTGG 6 cut(s) 332, 772, 966, 1179, 1813, 1921
BseRI GAGGAG 1 cut(s) 810
BseSI GKGCMC 1 cut(s) 682
BseXI GCAGC 4 cut(s) 143, 231, 367, 2156
BseYI CCCAGC 1 cut(s) 416
BsgI GTGCAG 1 cut(s) 1238
BshFI GGCC 2 cut(s) 965, 1856
BsiHKAI GWGCWC 2 cut(s) 1645, 1804
BslFI GGGAC 2 cut(s) 43, 2059
BslI CCNNNNNNNGG 5 cut(s) 687, 767, 989, 1321, 1777
BsmAI GTCTC 4 cut(s) 271, 1259, 2090, 2160
BsmBI CGTCTC 1 cut(s) 2090
BsmFI GGGAC 2 cut(s) 43, 2059
BsnI GGCC 2 cut(s) 965, 1856
Bsp1286I GDGCHC 3 cut(s) 682, 1645, 1804
Bsp1407I TGTACA 1 cut(s) 248
BspACI CCGC 1 cut(s) 837
BspANI GGCC 2 cut(s) 965, 1856
BspCNI CTCAG 7 cut(s) 703, 1161, 1465, 1687, 1984, 2125, 2131
BspLI GGNNCC 5 cut(s) 330, 515, 1168, 1782, 1855
BspMAI CTGCAG 1 cut(s) 1619
BspPI GGATC 5 cut(s) 706, 857, 1152, 1161, 1174
BspQI GCTCTTC 1 cut(s) 498
BspTI CTTAAG 1 cut(s) 374
BsrDI GCAATG 4 cut(s) 873, 1098, 1887, 2076
BsrGI TGTACA 1 cut(s) 248
BsrI ACTGG 6 cut(s) 332, 772, 966, 1179, 1813, 1921
BssECI CCNNGG 1 cut(s) 2202
BssNAI GTATAC 1 cut(s) 1688
BssT1I CCWWGG 1 cut(s) 2202
Bst1107I GTATAC 1 cut(s) 1688
Bst2UI CCWGG 4 cut(s) 242, 850, 1610, 1858
Bst4CI ACNGT 5 cut(s) 65, 590, 1433, 1799, 1817
Bst6I CTCTTC 3 cut(s) 405, 498, 1093
BstAFI CTTAAG 1 cut(s) 374
BstAUI TGTACA 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 1941
BstHHI GCGC 1 cut(s) 1977
BstMAI GTCTC 4 cut(s) 271, 1259, 2090, 2160
BstMWI GCNNNNNNNGC 5 cut(s) 228, 1373, 1936, 1974, 2204
BstNI CCWGG 4 cut(s) 242, 850, 1610, 1858
BstNSI RCATGY 4 cut(s) 175, 802, 942, 1943
BstSCI CCNGG 4 cut(s) 240, 848, 1608, 1856
BstSFI CTRYAG 1 cut(s) 1615
BstSLI GKGCMC 1 cut(s) 682
BstV1I GCAGC 4 cut(s) 143, 231, 367, 2156
BstV2I GAAGAC 2 cut(s) 1530, 1800
BstX2I RGATCY 5 cut(s) 351, 554, 609, 1144, 1166
BstYI RGATCY 5 cut(s) 351, 554, 609, 1144, 1166
BstZ17I GTATAC 1 cut(s) 1688
Bsu36I CCTNAGG 1 cut(s) 2139
BsuI GTATCC 1 cut(s) 900
BsuRI GGCC 2 cut(s) 965, 1856
BtgZI GCGATG 1 cut(s) 1473
BtrI CACGTC 1 cut(s) 1528
BtsIMutI CAGTG 6 cut(s) 339, 595, 765, 1752, 1804, 1914
Cac8I GCNNGC 1 cut(s) 1941
CfoI GCGC 1 cut(s) 1977
Cfr13I GGNCC 2 cut(s) 964, 1854
Csp6I GTAC 5 cut(s) 6, 249, 815, 859, 1020
CspCI CAANNNNNGTGG 2 cut(s) 1081, 1116
CviAII CATG 8 cut(s) 172, 799, 939, 994, 1077, 1940, 1999, 2003
CviQI GTAC 5 cut(s) 6, 249, 815, 859, 1020
DraI TTTAAA 1 cut(s) 1468
Eam1104I CTCTTC 3 cut(s) 405, 498, 1093
EarI CTCTTC 3 cut(s) 405, 498, 1093
Eco130I CCWWGG 1 cut(s) 2202
Eco32I GATATC 3 cut(s) 843, 1008, 1951
Eco57I CTGAAG 3 cut(s) 39, 426, 771
Eco81I CCTNAGG 1 cut(s) 2139
EcoRI GAATTC 1 cut(s) 715
EcoRII CCWGG 4 cut(s) 240, 848, 1608, 1856
EcoRV GATATC 3 cut(s) 843, 1008, 1951
EcoT14I CCWWGG 1 cut(s) 2202
EcoT22I ATGCAT 4 cut(s) 173, 1429, 1889, 2004
ErhI CCWWGG 1 cut(s) 2202
Esp3I CGTCTC 1 cut(s) 2090
FaeI CATG 8 cut(s) 175, 802, 942, 997, 1080, 1943, 2002, 2006
FalI AAGNNNNNCTT 8 cut(s) 524, 556, 596, 628, 687, 719, 1563, 1595
FaqI GGGAC 2 cut(s) 43, 2059
FatI CATG 8 cut(s) 171, 798, 938, 993, 1076, 1939, 1998, 2002
FauI CCCGC 1 cut(s) 830
FauNDI CATATG 1 cut(s) 892
FblI GTMKAC 2 cut(s) 1135, 1687
Fnu4HI GCNGC 5 cut(s) 15, 132, 220, 381, 2145
Fsp4HI GCNGC 5 cut(s) 15, 132, 220, 381, 2145
FspBI CTAG 6 cut(s) 228, 1104, 1667, 1910, 2148, 2163
GlaI GCGC 1 cut(s) 1976
GluI GCNGC 5 cut(s) 15, 132, 220, 381, 2145
GsaI CCCAGC 1 cut(s) 420
GsuI CTGGAG 1 cut(s) 1050
HaeIII GGCC 2 cut(s) 965, 1856
HhaI GCGC 1 cut(s) 1977
Hin1II CATG 8 cut(s) 175, 802, 942, 997, 1080, 1943, 2002, 2006
Hin6I GCGC 1 cut(s) 1975
HinP1I GCGC 1 cut(s) 1975
HindIII AAGCTT 2 cut(s) 1365, 2196
HphI GGTGA 5 cut(s) 53, 596, 1027, 1532, 2253
Hpy166II GTNNAC 6 cut(s) 61, 249, 1020, 1136, 1606, 1688
Hpy188I TCNGA 9 cut(s) 321, 406, 431, 481, 712, 1239, 1455, 1561, 1677
Hpy8I GTNNAC 6 cut(s) 61, 249, 1020, 1136, 1606, 1688
HpyAV CCTTC 6 cut(s) 82, 415, 991, 1568, 1844, 1964
HpyCH4III ACNGT 5 cut(s) 65, 590, 1433, 1799, 1817
HpyCH4IV ACGT 4 cut(s) 987, 1132, 1527, 2083
HpyF10VI GCNNNNNNNGC 5 cut(s) 228, 1373, 1936, 1974, 2204
HpySE526I ACGT 4 cut(s) 987, 1132, 1527, 2083
Hsp92II CATG 8 cut(s) 175, 802, 942, 997, 1080, 1943, 2002, 2006
HspAI GCGC 1 cut(s) 1975
LguI GCTCTTC 1 cut(s) 498
LmnI GCTCC 4 cut(s) 298, 444, 519, 809
Lsp1109I GCAGC 4 cut(s) 143, 231, 367, 2156
LweI GCATC 9 cut(s) 406, 439, 467, 512, 1414, 1776, 1874, 1939, 2216
MaeI CTAG 6 cut(s) 228, 1104, 1667, 1910, 2148, 2163
MaeII ACGT 4 cut(s) 987, 1132, 1527, 2083
MaeIII GTNAC 6 cut(s) 584, 590, 794, 1033, 1622, 1988
MfeI CAATTG 1 cut(s) 186
MflI RGATCY 5 cut(s) 351, 554, 609, 1144, 1166
MhlI GDGCHC 3 cut(s) 682, 1645, 1804
MlyI GAGTC 5 cut(s) 233, 973, 1034, 1041, 1664
MmeI TCCRAC 1 cut(s) 276
Mph1103I ATGCAT 4 cut(s) 173, 1429, 1889, 2004
MslI CAYNNNNRTG 2 cut(s) 447, 2007
MspCI CTTAAG 1 cut(s) 374
MspR9I CCNGG 4 cut(s) 242, 850, 1610, 1858
MunI CAATTG 1 cut(s) 186
MvaI CCWGG 4 cut(s) 242, 850, 1610, 1858
MwoI GCNNNNNNNGC 5 cut(s) 228, 1373, 1936, 1974, 2204
NdeI CATATG 1 cut(s) 892
NlaIII CATG 8 cut(s) 175, 802, 942, 997, 1080, 1943, 2002, 2006
NlaIV GGNNCC 5 cut(s) 330, 515, 1168, 1782, 1855
NmuCI GTSAC 3 cut(s) 584, 590, 1033
NsiI ATGCAT 4 cut(s) 173, 1429, 1889, 2004
NspI RCATGY 4 cut(s) 175, 802, 942, 1943
PaeI GCATGC 1 cut(s) 1943
PciI ACATGT 1 cut(s) 798
PciSI GCTCTTC 1 cut(s) 498
PfeI GAWTC 6 cut(s) 178, 316, 476, 1232, 1310, 1556
PflMI CCANNNNNTGG 1 cut(s) 989
PkrI GCNGC 5 cut(s) 16, 133, 221, 382, 2146
PleI GAGTC 5 cut(s) 232, 973, 1033, 1040, 1664
PpsI GAGTC 5 cut(s) 232, 973, 1033, 1040, 1664
PscI ACATGT 1 cut(s) 798
Psp1406I AACGTT 1 cut(s) 987
Psp6I CCWGG 4 cut(s) 240, 848, 1608, 1856
PspFI CCCAGC 1 cut(s) 416
PspGI CCWGG 4 cut(s) 240, 848, 1608, 1856
PspN4I GGNNCC 5 cut(s) 330, 515, 1168, 1782, 1855
PspPI GGNCC 2 cut(s) 964, 1854
PstI CTGCAG 1 cut(s) 1619
PsuI RGATCY 5 cut(s) 351, 554, 609, 1144, 1166
RsaI GTAC 5 cut(s) 7, 250, 816, 860, 1021
RsaNI GTAC 5 cut(s) 6, 249, 815, 859, 1020
RseI CAYNNNNRTG 2 cut(s) 447, 2007
SapI GCTCTTC 1 cut(s) 498
SatI GCNGC 5 cut(s) 15, 132, 220, 381, 2145
Sau96I GGNCC 2 cut(s) 964, 1854
SchI GAGTC 5 cut(s) 233, 973, 1034, 1041, 1664
ScrFI CCNGG 4 cut(s) 242, 850, 1610, 1858
SduI GDGCHC 3 cut(s) 682, 1645, 1804
SfaNI GCATC 9 cut(s) 406, 439, 467, 512, 1414, 1776, 1874, 1939, 2216
SfcI CTRYAG 1 cut(s) 1615
SmiI ATTTAAAT 1 cut(s) 1468
SmiMI CAYNNNNRTG 2 cut(s) 447, 2007
SmlI CTYRAG 6 cut(s) 268, 374, 485, 822, 1362, 2089
SmoI CTYRAG 6 cut(s) 268, 374, 485, 822, 1362, 2089
SphI GCATGC 1 cut(s) 1943
SsiI CCGC 1 cut(s) 837
SspI AATATT 3 cut(s) 657, 1291, 2238
SspMI CTAG 6 cut(s) 228, 1104, 1667, 1910, 2148, 2163
StyD4I CCNGG 4 cut(s) 240, 848, 1608, 1856
StyI CCWWGG 1 cut(s) 2202
SwaI ATTTAAAT 1 cut(s) 1468
TaaI ACNGT 5 cut(s) 65, 590, 1433, 1799, 1817
TaiI ACGT 4 cut(s) 990, 1135, 1530, 2086
TaqI TCGA 2 cut(s) 598, 2183
TatI WGTACW 1 cut(s) 248
TfiI GAWTC 6 cut(s) 178, 316, 476, 1232, 1310, 1556
TscAI CASTG 6 cut(s) 339, 595, 772, 1752, 1804, 1921
TseFI GTSAC 3 cut(s) 584, 590, 1033
TseI GCWGC 5 cut(s) 14, 131, 219, 380, 2144
Tsp45I GTSAC 3 cut(s) 584, 590, 1033
TspDTI ATGAA 5 cut(s) 909, 963, 1010, 1136, 1863
TspGWI ACGGA 2 cut(s) 506, 1037
TspRI CASTG 6 cut(s) 339, 595, 772, 1752, 1804, 1921
Van91I CCANNNNNTGG 1 cut(s) 989
Vha464I CTTAAG 1 cut(s) 374
XapI RAATTY 9 cut(s) 102, 463, 715, 827, 1277, 1390, 1412, 1593, 1707
XbaI TCTAGA 1 cut(s) 1666
XceI RCATGY 4 cut(s) 175, 802, 942, 1943
XmiI GTMKAC 2 cut(s) 1135, 1687
XspI CTAG 6 cut(s) 228, 1104, 1667, 1910, 2148, 2163
Zsp2I ATGCAT 4 cut(s) 173, 1429, 1889, 2004
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.