Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002237

Physical Location & Seq

Genomic Coordinates Reverse (-)

14500793 .. 14504193

Gene Structure 3401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G013490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGAAGGTCATGTTGGAGAAGATACTGCAGATGATTGAAGATCCTGAAGTGAAGGGTCTACTGAAGAAATTAGTGGAGCAGAATGCAGACGGATCAATGAAGAACTCGACCTCAACCTCAACCTTGGGCTCAGGAAGTTGCACAGAAAATGAAGGGAATTGCGTAACAAAAGGAACAAGGGATGTGATGATGGAGACGTTGGTTTCTGTAAAGAATATCGAGGAGGGGGTCAAAGGAATGGAAGGGAGAAGTACGGTAGATGAAGTATCTGAAACTTTATCGCCTACTGTTGGAATTGAAGTACTCAACATGCAGGGAACAAAGGATGTGATCAAGGAGACACAGGCTTCAACAGAGAATACAAATGCAGAGGTCAATCTAATTGAAGGGAGAGCTGAGACCCAGCTTGGCTCCATTGCATCTTCAGAGGGACAACAGCTGACAGAGGGAATCAGTGAAGTACATGGAAGAGGTCACTGTGAACTGGAAAATTCAGTATCTCAAGAGACCTTTTCTCCATGCCTTCCTAGTTCCATCCCTCTAGAGTTAAATGCATTGAAGAGGGAAAATGTATTTCCTGAGAGACCTGGCCAGCCTGACTGCCTTGATAAGGAGTACAAAATCAACTCTACAGTGAAAGAGCCTGTTTCCTTTAAGGTTGATCATTCAGTGTACATTGAACTATGGAAGTCGGTTGATAGAATTTCAAAGATATTTCCCGACATAGAAGCAGCAAGAACTCGAAGCGCAACGGGAATACAGGCTCTATGCATGTTGAATCGTGCAATTGAGAAAGCCAAGCAACTTGTTCAGTATTGCAGCGAGTCTAGCAAACTCGACCCGGTTAGTAACCTCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KAP U-box

Protein Analysis

286

Amino Acids

31.23

Weight (kDa)

4.89

Isoelectric Point (pI)

43.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36550
fragaria_vesca	FvH4_1g13090 FvH4_1g13090
malus_domestica	MD02G1145600.v1.1 MD15G1259700.v1.1
prunus_persica	Prupe.7G156200_v2.0.a1 Prupe.7G156200_v2.0.a1 Prupe.7G156200_v2.0.a1 Prupe.7G156200_v2.0.a1 Prupe.7G156200_v2.0.a1 Prupe.7G156200_v2.0.a1 Prupe.7G156200_v2.0.a1 Prupe.7G156200_v2.0.a1 Prupe.7G156200_v2.0.a1 Prupe.7G156200_v2.0.a1 Prupe.7G156200_v2.0.a1
pyrus_communis	pycom02g11520 pycom15g22690
rosa_chinensis	RchiOBHm_Chr2g0101271 RchiOBHm_Chr2g0104721 RchiOBHm_Chr2g0104731
rosa_laevigata	RLG00000017066 RLG00000017354
rosa_multiflora	Rmu_sc0006314.1_g000019
rosa_roxburghii	Rroxscaffold_2G00141450
rosa_rugosa	Rorug02G0099600 Rorug02G0122000 Rorug02G0122100 Rorug02G0122200
rosa_samantha	Rh2AG145600 Rh2AG172300 Rh2BG151000 Rh2BG179900 Rh2CG151400 Rh2CG177400 Rh2DG151100 Rh2DG178600
rosa_wichuraiana	Rw0G008640 Rw0G008650 Rw2G011360 Rw2G013490 Rw2G013550 Rw2G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	58
AclWI	GGATC	2 cut(s)	35, 100
AcoI	YGGCCR	1 cut(s)	589
AcsI	RAATTY	2 cut(s)	490, 702
AcuI	CTGAAG	3 cut(s)	66, 83, 408
AfaI	GTAC	5 cut(s)	253, 303, 462, 617, 674
AfiI	CCNNNNNNNGG	2 cut(s)	290, 610
AgsI	TTSAA	8 cut(s)	38, 299, 351, 386, 559, 680, 708, 778
AjnI	CCWGG	1 cut(s)	586
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AluBI	AGCT	3 cut(s)	395, 406, 439
AluI	AGCT	3 cut(s)	395, 406, 439
Alw26I	GTCTC	5 cut(s)	188, 332, 392, 500, 577
AlwI	GGATC	2 cut(s)	35, 100
AoxI	GGCC	1 cut(s)	589
ApeKI	GCWGC	2 cut(s)	731, 819
ApoI	RAATTY	2 cut(s)	490, 702
AspLEI	GCGC	1 cut(s)	749
AsuC2I	CCSGG	1 cut(s)	842
BalI	TGGCCA	1 cut(s)	591
BanII	GRGCYC	1 cut(s)	131
BbvI	GCAGC	2 cut(s)	743, 831
BccI	CCATC	2 cut(s)	184, 542
BciT130I	CCWGG	1 cut(s)	588
BclI	TGATCA	2 cut(s)	330, 661
BcnI	CCSGG	1 cut(s)	842
BcoDI	GTCTC	5 cut(s)	188, 332, 392, 500, 577
BfaI	CTAG	3 cut(s)	528, 542, 828
BfmI	CTRYAG	2 cut(s)	26, 630
BisI	GCNGC	2 cut(s)	732, 820
BlsI	GCNGC	2 cut(s)	733, 821
BmcAI	AGTACT	1 cut(s)	303
Bme1390I	CCNGG	2 cut(s)	588, 842
BmiI	GGNNCC	1 cut(s)	412
BmrFI	CCNGG	2 cut(s)	588, 842
BmsI	GCATC	1 cut(s)	428
Bpu10I	CCTNAGC	1 cut(s)	130
BpuEI	CTTGAG	1 cut(s)	486
BpuMI	CCSGG	1 cut(s)	842
BsaI	GGTCTC	3 cut(s)	392, 500, 577
BsaJI	CCNNGG	2 cut(s)	123, 853
BsaXI	ACNNNNNCTCC	2 cut(s)	499, 529
Bsc4I	CCNNNNNNNGG	2 cut(s)	290, 610
Bse1I	ACTGG	1 cut(s)	489
Bse3DI	GCAATG	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	588
BseDI	CCNNGG	2 cut(s)	123, 853
BseGI	GGATG	3 cut(s)	187, 331, 534
BseLI	CCNNNNNNNGG	2 cut(s)	290, 610
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	3 cut(s)	144, 387, 570
BseNI	ACTGG	1 cut(s)	489
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	2 cut(s)	743, 831
BseYI	CCCAGC	1 cut(s)	402
BshFI	GGCC	1 cut(s)	591
BsiSI	CCGG	1 cut(s)	842
BslFI	GGGAC	1 cut(s)	444
BslI	CCNNNNNNNGG	2 cut(s)	290, 610
BsmAI	GTCTC	5 cut(s)	188, 332, 392, 500, 577
BsmBI	CGTCTC	1 cut(s)	188
BsmFI	GGGAC	1 cut(s)	444
BsmI	GAATGC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	591
Bso31I	GGTCTC	3 cut(s)	392, 500, 577
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp1407I	TGTACA	1 cut(s)	672
Bsp143I	GATC	4 cut(s)	40, 92, 330, 661
BspANI	GGCC	1 cut(s)	591
BspCNI	CTCAG	3 cut(s)	143, 388, 571
BspLI	GGNNCC	1 cut(s)	412
BspMAI	CTGCAG	1 cut(s)	30
BspPI	GGATC	2 cut(s)	35, 100
BspTNI	GGTCTC	3 cut(s)	392, 500, 577
BsrDI	GCAATG	1 cut(s)	414
BsrGI	TGTACA	1 cut(s)	672
BsrI	ACTGG	1 cut(s)	489
BssECI	CCNNGG	2 cut(s)	123, 853
BssMI	GATC	4 cut(s)	40, 92, 330, 661
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	588
Bst4CI	ACNGT	4 cut(s)	256, 289, 479, 634
Bst6I	CTCTTC	2 cut(s)	463, 554
BstAUI	TGTACA	1 cut(s)	672
BstC8I	GCNNGC	1 cut(s)	593
BstDEI	CTNAG	3 cut(s)	130, 396, 579
BstENI	CCTNNNNNAGG	1 cut(s)	608
BstF5I	GGATG	3 cut(s)	187, 331, 534
BstHHI	GCGC	1 cut(s)	749
BstKTI	GATC	4 cut(s)	43, 95, 333, 664
BstMAI	GTCTC	5 cut(s)	188, 332, 392, 500, 577
BstMBI	GATC	4 cut(s)	40, 92, 330, 661
BstMWI	GCNNNNNNNGC	1 cut(s)	828
BstNI	CCWGG	1 cut(s)	588
BstNSI	RCATGY	2 cut(s)	313, 775
BstSCI	CCNGG	2 cut(s)	586, 840
BstSFI	CTRYAG	2 cut(s)	26, 630
BstV1I	GCAGC	2 cut(s)	743, 831
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	591
BtsCI	GGATG	3 cut(s)	187, 331, 534
BtsIMutI	CAGTG	4 cut(s)	460, 475, 639, 675
Cac8I	GCNNGC	1 cut(s)	593
CfoI	GCGC	1 cut(s)	749
Csp6I	GTAC	5 cut(s)	252, 302, 461, 616, 673
CviAII	CATG	5 cut(s)	10, 310, 464, 519, 772
CviQI	GTAC	5 cut(s)	252, 302, 461, 616, 673
DdeI	CTNAG	3 cut(s)	130, 396, 579
DpnI	GATC	4 cut(s)	42, 94, 332, 663
DpnII	GATC	4 cut(s)	40, 92, 330, 661
EaeI	YGGCCR	1 cut(s)	589
Eam1104I	CTCTTC	2 cut(s)	463, 554
EarI	CTCTTC	2 cut(s)	463, 554
Eco130I	CCWWGG	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	131
Eco31I	GGTCTC	3 cut(s)	392, 500, 577
Eco57I	CTGAAG	3 cut(s)	66, 83, 408
EcoNI	CCTNNNNNAGG	1 cut(s)	608
EcoRII	CCWGG	1 cut(s)	586
EcoT14I	CCWWGG	1 cut(s)	123
EcoT22I	ATGCAT	2 cut(s)	556, 773
EcoT38I	GRGCYC	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	123
Esp3I	CGTCTC	1 cut(s)	188
FaeI	CATG	5 cut(s)	13, 313, 467, 522, 775
FaiI	YATR	8 cut(s)	11, 311, 465, 520, 685, 725, 769, 773
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	5 cut(s)	9, 309, 463, 518, 771
FbaI	TGATCA	2 cut(s)	330, 661
FblI	GTMKAC	1 cut(s)	58
Fnu4HI	GCNGC	2 cut(s)	732, 820
FokI	GGATG	3 cut(s)	194, 338, 521
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	2 cut(s)	732, 820
FspBI	CTAG	3 cut(s)	528, 542, 828
GlaI	GCGC	1 cut(s)	748
GluI	GCNGC	2 cut(s)	732, 820
GsaI	CCCAGC	1 cut(s)	406
HaeIII	GGCC	1 cut(s)	591
HapII	CCGG	1 cut(s)	842
HhaI	GCGC	1 cut(s)	749
Hin1II	CATG	5 cut(s)	13, 313, 467, 522, 775
Hin6I	GCGC	1 cut(s)	747
HinP1I	GCGC	1 cut(s)	747
HinfI	GANTC	3 cut(s)	450, 778, 824
HpaII	CCGG	1 cut(s)	842
Hpy166II	GTNNAC	3 cut(s)	59, 482, 673
Hpy188I	TCNGA	3 cut(s)	271, 427, 857
Hpy188III	TCNNGA	6 cut(s)	44, 132, 503, 542, 578, 719
Hpy8I	GTNNAC	3 cut(s)	59, 482, 673
HpyAV	CCTTC	5 cut(s)	46, 146, 236, 380, 533
HpyCH4III	ACNGT	4 cut(s)	256, 289, 479, 634
HpyCH4IV	ACGT	1 cut(s)	197
HpyF10VI	GCNNNNNNNGC	1 cut(s)	828
HpyF3I	CTNAG	3 cut(s)	130, 396, 579
HpySE526I	ACGT	1 cut(s)	197
Hsp92II	CATG	5 cut(s)	13, 313, 467, 522, 775
HspAI	GCGC	1 cut(s)	747
Ksp22I	TGATCA	2 cut(s)	330, 661
Kzo9I	GATC	4 cut(s)	40, 92, 330, 661
LmnI	GCTCC	2 cut(s)	76, 416
Lsp1109I	GCAGC	2 cut(s)	743, 831
LweI	GCATC	1 cut(s)	428
MaeI	CTAG	3 cut(s)	528, 542, 828
MaeII	ACGT	1 cut(s)	197
MaeIII	GTNAC	3 cut(s)	163, 473, 848
MalI	GATC	4 cut(s)	42, 94, 332, 663
MboI	GATC	4 cut(s)	40, 92, 330, 661
MboII	GAAGA	7 cut(s)	31, 50, 76, 112, 414, 480, 571
MfeI	CAATTG	1 cut(s)	786
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	131
MlsI	TGGCCA	1 cut(s)	591
MluCI	AATT	7 cut(s)	68, 157, 294, 381, 490, 702, 786
MluNI	TGGCCA	1 cut(s)	591
MlyI	GAGTC	1 cut(s)	833
MmeI	TCCRAC	1 cut(s)	271
Mox20I	TGGCCA	1 cut(s)	591
Mph1103I	ATGCAT	2 cut(s)	556, 773
MscI	TGGCCA	1 cut(s)	591
MseI	TTAA	2 cut(s)	548, 654
Msp20I	TGGCCA	1 cut(s)	591
MspA1I	CMGCKG	1 cut(s)	439
MspI	CCGG	1 cut(s)	842
MspR9I	CCNGG	2 cut(s)	588, 842
MunI	CAATTG	1 cut(s)	786
Mva1269I	GAATGC	1 cut(s)	88
MvaI	CCWGG	1 cut(s)	588
MwoI	GCNNNNNNNGC	1 cut(s)	828
NciI	CCSGG	1 cut(s)	842
NdeII	GATC	4 cut(s)	40, 92, 330, 661
NlaIII	CATG	5 cut(s)	13, 313, 467, 522, 775
NlaIV	GGNNCC	1 cut(s)	412
NmuCI	GTSAC	1 cut(s)	473
NsiI	ATGCAT	2 cut(s)	556, 773
NspI	RCATGY	2 cut(s)	313, 775
PctI	GAATGC	1 cut(s)	88
PfeI	GAWTC	2 cut(s)	450, 778
PkrI	GCNGC	2 cut(s)	733, 821
PleI	GAGTC	1 cut(s)	832
PpsI	GAGTC	1 cut(s)	832
Psp6I	CCWGG	1 cut(s)	586
PspFI	CCCAGC	1 cut(s)	402
PspGI	CCWGG	1 cut(s)	586
PspN4I	GGNNCC	1 cut(s)	412
PstI	CTGCAG	1 cut(s)	30
PsuI	RGATCY	1 cut(s)	40
PvuII	CAGCTG	1 cut(s)	439
RsaI	GTAC	5 cut(s)	253, 303, 462, 617, 674
RsaNI	GTAC	5 cut(s)	252, 302, 461, 616, 673
SaqAI	TTAA	2 cut(s)	548, 654
SatI	GCNGC	2 cut(s)	732, 820
Sau3AI	GATC	4 cut(s)	40, 92, 330, 661
ScaI	AGTACT	1 cut(s)	303
SchI	GAGTC	1 cut(s)	833
ScrFI	CCNGG	2 cut(s)	588, 842
SduI	GDGCHC	1 cut(s)	131
SfaNI	GCATC	1 cut(s)	428
SfcI	CTRYAG	2 cut(s)	26, 630
SmlI	CTYRAG	1 cut(s)	501
SmoI	CTYRAG	1 cut(s)	501
Sse9I	AATT	7 cut(s)	68, 157, 294, 381, 490, 702, 786
SspMI	CTAG	3 cut(s)	528, 542, 828
StyD4I	CCNGG	2 cut(s)	586, 840
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	4 cut(s)	256, 289, 479, 634
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	4 cut(s)	107, 219, 742, 837
TasI	AATT	7 cut(s)	68, 157, 294, 381, 490, 702, 786
TatI	WGTACW	4 cut(s)	301, 460, 615, 672
TfiI	GAWTC	2 cut(s)	450, 778
Tru1I	TTAA	2 cut(s)	548, 654
Tru9I	TTAA	2 cut(s)	548, 654
TscAI	CASTG	4 cut(s)	460, 482, 639, 675
TseFI	GTSAC	1 cut(s)	473
TseI	GCWGC	2 cut(s)	731, 819
Tsp45I	GTSAC	1 cut(s)	473
TspDTI	ATGAA	4 cut(s)	17, 113, 165, 276
TspGWI	ACGGA	1 cut(s)	105
TspRI	CASTG	4 cut(s)	460, 482, 639, 675
XagI	CCTNNNNNAGG	1 cut(s)	608
XapI	RAATTY	2 cut(s)	490, 702
XbaI	TCTAGA	1 cut(s)	541
XceI	RCATGY	2 cut(s)	313, 775
XmiI	GTMKAC	1 cut(s)	58
XspI	CTAG	3 cut(s)	528, 542, 828
ZrmI	AGTACT	1 cut(s)	303
Zsp2I	ATGCAT	2 cut(s)	556, 773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.