Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002237

Physical Location & Seq

Genomic Coordinates Reverse (-)

14590434 .. 14591563

Gene Structure 1130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G013560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGAAGGTCATGTTGGAGAAGATAATGCAGATGATTGATGATCCTGAAGTGAAGGGTCTACTGAAGAAGTTAGTGGAGCAGAATGCAGGCGGATCAATGAAGAGCTCGCCCTCAACCTCAACCTTGGGCTCAGGAAGTTGCACAGAAAATGAAGGGAATTGCGAAACACAAGTGCCGTCATCAAAAGCACTAGTAGAAGCAGCATTTCGGGTGCTACTTAATGCCGTTATAGAAGTGAAGGAGAGCACTATTATGTTTAGACCTCTCCTCCGACGTCTCAGATCTACACTAGACTATTTACTGCCATTGATTGGAGATATGGTACAATGTAACAAGGCATTAGATCGCCCAAAAGAGGAACTAGAAAATATGAGAATACAAATGGAGAATGGTGTAGTGCTTGTTGGCAAGTGCTTAAATGTTCGTTGGTGGACAAGAAACAAAAAGTATATATACACCAACCAACTTTTTGAATTGAATGATTATCTTCAAGAGCAGTTAAGTATACTGCTAGTGGAGATAGCAAGGGATGCGAGGGAGACCTCGGTGGTGATAAGGAATATTAAGGACATGGTCAAGAGAGATGAAAGGAGTGGTATGGCAGAAAATCAACTTGAATATAAAGGTTTTTGTAATGTATCTGAACCTCCATTGCCTACTGTTGGACTCGAAACAAACATGCAAGGAACAAGGGATGTGATGATGGAGACATTGGTTTCTGTAAAGAATATCGAGGAGGGGGTCAAGGGAATGGAAGGGAGAATTATAGATGATGTATCTGAAACTCTGTCGCCTACTGTTGGAAGTGAAGTACTCAACATGCAGGGAACAAAGGATATGATCAAGGAGACACAGGCTTCAACAGAGAATACAAATCCAGGGGTCAACCTAATTGAAGGCAGAGCTGAGGTACAACCGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

307

Amino Acids

34.46

Weight (kDa)

5.02

Isoelectric Point (pI)

42.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	63 - 187	1.1e-24	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36550
fragaria_vesca	FvH4_1g13090 FvH4_1g13090
malus_domestica	MD02G1145600.v1.1 MD15G1259700.v1.1
prunus_persica	Prupe.7G156200_v2.0.a1 Prupe.7G156200_v2.0.a1 Prupe.7G156200_v2.0.a1 Prupe.7G156200_v2.0.a1 Prupe.7G156200_v2.0.a1 Prupe.7G156200_v2.0.a1 Prupe.7G156200_v2.0.a1 Prupe.7G156200_v2.0.a1 Prupe.7G156200_v2.0.a1 Prupe.7G156200_v2.0.a1 Prupe.7G156200_v2.0.a1
pyrus_communis	pycom02g11520 pycom15g22690
rosa_chinensis	RchiOBHm_Chr2g0101271 RchiOBHm_Chr2g0104721 RchiOBHm_Chr2g0104731
rosa_laevigata	RLG00000017066 RLG00000017354
rosa_multiflora	Rmu_sc0006314.1_g000019
rosa_roxburghii	Rroxscaffold_2G00141450
rosa_rugosa	Rorug02G0099600 Rorug02G0122000 Rorug02G0122100 Rorug02G0122200
rosa_samantha	Rh2AG145600 Rh2AG172300 Rh2BG151000 Rh2BG179900 Rh2CG151400 Rh2CG177400 Rh2DG151100 Rh2DG178600
rosa_wichuraiana	Rw0G008640 Rw0G008650 Rw2G011360 Rw2G013490 Rw2G013550 Rw2G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	277
AccB7I	CCANNNNNTGG	1 cut(s)	311
AccI	GTMKAC	2 cut(s)	58, 505
AciI	CCGC	1 cut(s)	90
AclWI	GGATC	2 cut(s)	35, 100
AcuI	CTGAAG	2 cut(s)	66, 83
AcyI	GRCGYC	1 cut(s)	274
AfaI	GTAC	4 cut(s)	324, 813, 912, 920
AfiI	CCNNNNNNNGG	4 cut(s)	311, 355, 662, 800
AgsI	TTSAA	6 cut(s)	473, 478, 491, 617, 861, 896
AhlI	ACTAGT	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	877
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AluBI	AGCT	2 cut(s)	105, 905
AluI	AGCT	2 cut(s)	105, 905
Alw21I	GWGCWC	2 cut(s)	107, 248
Alw26I	GTCTC	4 cut(s)	281, 533, 701, 842
AlwI	GGATC	2 cut(s)	35, 100
ApeKI	GCWGC	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	562
BaeI	ACNNNNGTAYC	1 cut(s)	902
BanII	GRGCYC	2 cut(s)	107, 131
Bbv12I	GWGCWC	2 cut(s)	107, 248
BbvCI	CCTCAGC	1 cut(s)	906
BbvI	GCAGC	1 cut(s)	212
BccI	CCATC	1 cut(s)	697
BceAI	ACGGC	2 cut(s)	160, 209
BciT130I	CCWGG	1 cut(s)	879
BclI	TGATCA	1 cut(s)	840
BcoDI	GTCTC	4 cut(s)	281, 533, 701, 842
BcuI	ACTAGT	1 cut(s)	190
BfaI	CTAG	5 cut(s)	191, 290, 362, 512, 922
BglII	AGATCT	1 cut(s)	281
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
BmcAI	AGTACT	1 cut(s)	813
Bme1390I	CCNGG	1 cut(s)	879
BmrFI	CCNGG	1 cut(s)	879
BmsI	GCATC	1 cut(s)	520
Bpu10I	CCTNAGC	2 cut(s)	130, 906
BsaHI	GRCGYC	1 cut(s)	274
BsaI	GGTCTC	1 cut(s)	533
BsaJI	CCNNGG	3 cut(s)	123, 543, 878
BsaXI	ACNNNNNCTCC	4 cut(s)	252, 282, 306, 336
Bsc4I	CCNNNNNNNGG	4 cut(s)	311, 355, 662, 800
Bse3DI	GCAATG	1 cut(s)	650
BseBI	CCWGG	1 cut(s)	879
BseDI	CCNNGG	3 cut(s)	123, 543, 878
BseGI	GGATG	2 cut(s)	535, 700
BseLI	CCNNNNNNNGG	4 cut(s)	311, 355, 662, 800
BseMI	GCAATG	1 cut(s)	650
BseMII	CTCAG	3 cut(s)	144, 292, 897
BseRI	GAGGAG	2 cut(s)	257, 749
BseXI	GCAGC	1 cut(s)	212
BsiHKAI	GWGCWC	2 cut(s)	107, 248
BslI	CCNNNNNNNGG	4 cut(s)	311, 355, 662, 800
BsmAI	GTCTC	4 cut(s)	281, 533, 701, 842
BsmBI	CGTCTC	1 cut(s)	281
BsmI	GAATGC	1 cut(s)	88
Bso31I	GGTCTC	1 cut(s)	533
Bsp1286I	GDGCHC	3 cut(s)	107, 131, 248
Bsp143I	GATC	5 cut(s)	40, 92, 281, 343, 840
BspACI	CCGC	1 cut(s)	90
BspCNI	CTCAG	3 cut(s)	143, 291, 898
BspPI	GGATC	2 cut(s)	35, 100
BspQI	GCTCTTC	1 cut(s)	95
BspTNI	GGTCTC	1 cut(s)	533
BsrDI	GCAATG	1 cut(s)	650
BssECI	CCNNGG	3 cut(s)	123, 543, 878
BssMI	GATC	5 cut(s)	40, 92, 281, 343, 840
BssNAI	GTATAC	1 cut(s)	506
BssNI	GRCGYC	1 cut(s)	274
BssT1I	CCWWGG	1 cut(s)	123
Bst1107I	GTATAC	1 cut(s)	506
Bst2UI	CCWGG	1 cut(s)	879
Bst4CI	ACNGT	3 cut(s)	661, 799, 918
Bst6I	CTCTTC	1 cut(s)	95
BstACI	GRCGYC	1 cut(s)	274
BstAPI	GCANNNNNTGC	1 cut(s)	530
BstC8I	GCNNGC	2 cut(s)	88, 107
BstDEI	CTNAG	3 cut(s)	130, 278, 906
BstF5I	GGATG	2 cut(s)	535, 700
BstKTI	GATC	5 cut(s)	43, 95, 284, 346, 843
BstMAI	GTCTC	4 cut(s)	281, 533, 701, 842
BstMBI	GATC	5 cut(s)	40, 92, 281, 343, 840
BstMWI	GCNNNNNNNGC	1 cut(s)	530
BstNI	CCWGG	1 cut(s)	879
BstNSI	RCATGY	2 cut(s)	682, 823
BstSCI	CCNGG	1 cut(s)	877
BstV1I	GCAGC	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	281
BstYI	RGATCY	1 cut(s)	281
BstZ17I	GTATAC	1 cut(s)	506
BtsCI	GGATG	2 cut(s)	535, 700
Cac8I	GCNNGC	2 cut(s)	88, 107
Csp6I	GTAC	4 cut(s)	323, 812, 911, 919
CviAII	CATG	4 cut(s)	10, 571, 679, 820
CviJI	RGCY	4 cut(s)	105, 129, 857, 905
CviKI_1	RGCY	4 cut(s)	105, 129, 857, 905
CviQI	GTAC	4 cut(s)	323, 812, 911, 919
DdeI	CTNAG	3 cut(s)	130, 278, 906
DpnI	GATC	5 cut(s)	42, 94, 283, 345, 842
DpnII	GATC	5 cut(s)	40, 92, 281, 343, 840
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
EciI	GGCGGA	1 cut(s)	105
Ecl136II	GAGCTC	1 cut(s)	105
Eco130I	CCWWGG	1 cut(s)	123
Eco24I	GRGCYC	2 cut(s)	107, 131
Eco31I	GGTCTC	1 cut(s)	533
Eco53kI	GAGCTC	1 cut(s)	105
Eco57I	CTGAAG	2 cut(s)	66, 83
EcoICRI	GAGCTC	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	877
EcoT14I	CCWWGG	1 cut(s)	123
EcoT38I	GRGCYC	2 cut(s)	107, 131
ErhI	CCWWGG	1 cut(s)	123
Esp3I	CGTCTC	1 cut(s)	281
FaeI	CATG	4 cut(s)	13, 574, 682, 823
FatI	CATG	4 cut(s)	9, 570, 678, 819
FbaI	TGATCA	1 cut(s)	840
FblI	GTMKAC	2 cut(s)	58, 505
Fnu4HI	GCNGC	1 cut(s)	201
FokI	GGATG	2 cut(s)	542, 707
FriOI	GRGCYC	2 cut(s)	107, 131
Fsp4HI	GCNGC	1 cut(s)	201
FspBI	CTAG	5 cut(s)	191, 290, 362, 512, 922
GluI	GCNGC	1 cut(s)	201
Hin1I	GRCGYC	1 cut(s)	274
Hin1II	CATG	4 cut(s)	13, 574, 682, 823
HincII	GTYRAC	1 cut(s)	886
HindII	GTYRAC	1 cut(s)	886
HinfI	GANTC	1 cut(s)	666
HphI	GGTGA	1 cut(s)	562
Hpy166II	GTNNAC	4 cut(s)	59, 432, 506, 886
Hpy188I	TCNGA	4 cut(s)	272, 281, 643, 781
Hpy188III	TCNNGA	4 cut(s)	44, 132, 491, 577
Hpy8I	GTNNAC	4 cut(s)	59, 432, 506, 886
Hpy99I	CGWCG	1 cut(s)	276
HpyAV	CCTTC	5 cut(s)	46, 146, 232, 749, 890
HpyCH4III	ACNGT	3 cut(s)	661, 799, 918
HpyCH4IV	ACGT	1 cut(s)	274
HpyCH4V	TGCA	5 cut(s)	28, 86, 141, 682, 823
HpyF10VI	GCNNNNNNNGC	1 cut(s)	530
HpyF3I	CTNAG	3 cut(s)	130, 278, 906
HpySE526I	ACGT	1 cut(s)	274
Hsp92I	GRCGYC	1 cut(s)	274
Hsp92II	CATG	4 cut(s)	13, 574, 682, 823
Ksp22I	TGATCA	1 cut(s)	840
Kzo9I	GATC	5 cut(s)	40, 92, 281, 343, 840
LguI	GCTCTTC	1 cut(s)	95
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	7 cut(s)	57, 72, 117, 809, 839, 864, 891
Lsp1109I	GCAGC	1 cut(s)	212
LweI	GCATC	1 cut(s)	520
MaeI	CTAG	5 cut(s)	191, 290, 362, 512, 922
MaeII	ACGT	1 cut(s)	274
MaeIII	GTNAC	1 cut(s)	329
MalI	GATC	5 cut(s)	42, 94, 283, 345, 842
MboI	GATC	5 cut(s)	40, 92, 281, 343, 840
MboII	GAAGA	4 cut(s)	31, 76, 112, 479
MflI	RGATCY	1 cut(s)	281
MhlI	GDGCHC	3 cut(s)	107, 131, 248
MluCI	AATT	4 cut(s)	157, 473, 762, 891
MlyI	GAGTC	1 cut(s)	660
MmeI	TCCRAC	3 cut(s)	295, 643, 781
MseI	TTAA	4 cut(s)	219, 416, 500, 564
MslI	CAYNNNNRTG	1 cut(s)	251
MspR9I	CCNGG	1 cut(s)	879
Mva1269I	GAATGC	1 cut(s)	88
MvaI	CCWGG	1 cut(s)	879
MwoI	GCNNNNNNNGC	1 cut(s)	530
NdeII	GATC	5 cut(s)	40, 92, 281, 343, 840
NlaIII	CATG	4 cut(s)	13, 574, 682, 823
NspI	RCATGY	2 cut(s)	682, 823
PciSI	GCTCTTC	1 cut(s)	95
PctI	GAATGC	1 cut(s)	88
PflFI	GACNNNGTC	1 cut(s)	572
PflMI	CCANNNNNTGG	1 cut(s)	311
PkrI	GCNGC	1 cut(s)	202
PleI	GAGTC	1 cut(s)	660
PpsI	GAGTC	1 cut(s)	660
Psp124BI	GAGCTC	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	877
PspGI	CCWGG	1 cut(s)	877
PsuI	RGATCY	1 cut(s)	281
PsyI	GACNNNGTC	1 cut(s)	572
RsaI	GTAC	4 cut(s)	324, 813, 912, 920
RsaNI	GTAC	4 cut(s)	323, 812, 911, 919
RseI	CAYNNNNRTG	1 cut(s)	251
SacI	GAGCTC	1 cut(s)	107
SapI	GCTCTTC	1 cut(s)	95
SaqAI	TTAA	4 cut(s)	219, 416, 500, 564
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	5 cut(s)	40, 92, 281, 343, 840
ScaI	AGTACT	1 cut(s)	813
SchI	GAGTC	1 cut(s)	660
ScrFI	CCNGG	1 cut(s)	879
SduI	GDGCHC	3 cut(s)	107, 131, 248
SfaNI	GCATC	1 cut(s)	520
SmiMI	CAYNNNNRTG	1 cut(s)	251
SpeI	ACTAGT	1 cut(s)	190
Sse9I	AATT	4 cut(s)	157, 473, 762, 891
SsiI	CCGC	1 cut(s)	90
SspI	AATATT	1 cut(s)	562
SspMI	CTAG	5 cut(s)	191, 290, 362, 512, 922
SstI	GAGCTC	1 cut(s)	107
StyD4I	CCNGG	1 cut(s)	877
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	3 cut(s)	661, 799, 918
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	2 cut(s)	669, 732
TasI	AATT	4 cut(s)	157, 473, 762, 891
TatI	WGTACW	1 cut(s)	811
Tru1I	TTAA	4 cut(s)	219, 416, 500, 564
Tru9I	TTAA	4 cut(s)	219, 416, 500, 564
TseI	GCWGC	1 cut(s)	200
TspDTI	ATGAA	4 cut(s)	17, 113, 165, 600
Tth111I	GACNNNGTC	1 cut(s)	572
Van91I	CCANNNNNTGG	1 cut(s)	311
XceI	RCATGY	2 cut(s)	682, 823
XmiI	GTMKAC	2 cut(s)	58, 505
XspI	CTAG	5 cut(s)	191, 290, 362, 512, 922
ZraI	GACGTC	1 cut(s)	275
ZrmI	AGTACT	1 cut(s)	813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.