RING-type E3 ubiquitin transferase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G36550 |
| fragaria_vesca | FvH4_1g13090 FvH4_1g13090 |
| malus_domestica | MD02G1145600.v1.1 MD15G1259700.v1.1 |
| prunus_persica | Prupe.7G156200_v2.0.a1 Prupe.7G156200_v2.0.a1 Prupe.7G156200_v2.0.a1 Prupe.7G156200_v2.0.a1 Prupe.7G156200_v2.0.a1 Prupe.7G156200_v2.0.a1 Prupe.7G156200_v2.0.a1 Prupe.7G156200_v2.0.a1 Prupe.7G156200_v2.0.a1 Prupe.7G156200_v2.0.a1 Prupe.7G156200_v2.0.a1 |
| pyrus_communis | pycom02g11520 pycom15g22690 |
| rosa_chinensis | RchiOBHm_Chr2g0101271 RchiOBHm_Chr2g0104721 RchiOBHm_Chr2g0104731 |
| rosa_laevigata | RLG00000017066 RLG00000017354 |
| rosa_multiflora | Rmu_sc0006314.1_g000019 |
| rosa_roxburghii | Rroxscaffold_2G00141450 |
| rosa_rugosa | Rorug02G0099600 Rorug02G0122000 Rorug02G0122100 Rorug02G0122200 |
| rosa_samantha | Rh2AG145600 Rh2AG172300 Rh2BG151000 Rh2BG179900 Rh2CG151400 Rh2CG177400 Rh2DG151100 Rh2DG178600 |
| rosa_wichuraiana | Rw0G008640 Rw0G008650 Rw2G011360 Rw2G013490 Rw2G013550 Rw2G013560 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 786 |
| AccBSI | CCGCTC | 1 cut(s) | 205 |
| AccII | CGCG | 1 cut(s) | 1580 |
| AciI | CCGC | 7 cut(s) | 143, 205, 326, 352, 702, 735, 1580 |
| AclWI | GGATC | 6 cut(s) | 302, 315, 589, 669, 906, 919 |
| AcsI | RAATTY | 5 cut(s) | 373, 598, 1147, 1398, 1836 |
| AcuI | CTGAAG | 4 cut(s) | 336, 654, 1140, 1530 |
| AfaI | GTAC | 2 cut(s) | 681, 722 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 570, 786, 841, 1078 |
| AflII | CTTAAG | 1 cut(s) | 284 |
| AflIII | ACRYGT | 1 cut(s) | 663 |
| AjiI | CACGTC | 1 cut(s) | 151 |
| AjnI | CCWGG | 1 cut(s) | 1517 |
| AluBI | AGCT | 3 cut(s) | 238, 1124, 1784 |
| AluI | AGCT | 3 cut(s) | 238, 1124, 1784 |
| Alw21I | GWGCWC | 2 cut(s) | 50, 1578 |
| Alw26I | GTCTC | 3 cut(s) | 1016, 1727, 1782 |
| AlwI | GGATC | 6 cut(s) | 302, 315, 589, 669, 906, 919 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1358 |
| AoxI | GGCC | 5 cut(s) | 125, 132, 399, 475, 1515 |
| ApeKI | GCWGC | 3 cut(s) | 103, 290, 1781 |
| ApoI | RAATTY | 5 cut(s) | 373, 598, 1147, 1398, 1836 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 81, 113, 1025, 1057, 1187, 1219 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1296, 1402 |
| AspS9I | GGNCC | 2 cut(s) | 400, 476 |
| AsuHPI | GGTGA | 2 cut(s) | 814, 1875 |
| AsuII | TTCGAA | 1 cut(s) | 1031 |
| AxyI | CCTNAGG | 1 cut(s) | 648 |
| BaeGI | GKGCMC | 1 cut(s) | 565 |
| BamHI | GGATCC | 2 cut(s) | 307, 911 |
| BauI | CACGAG | 2 cut(s) | 15, 684 |
| BbsI | GAAGAC | 4 cut(s) | 11, 1074, 1251, 1461 |
| Bbv12I | GWGCWC | 2 cut(s) | 50, 1578 |
| BbvI | GCAGC | 3 cut(s) | 115, 277, 1793 |
| BccI | CCATC | 7 cut(s) | 42, 79, 235, 319, 953, 1535, 1755 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 713, 747 |
| BciT130I | CCWGG | 1 cut(s) | 1519 |
| BcoDI | GTCTC | 3 cut(s) | 1016, 1727, 1782 |
| BfaI | CTAG | 6 cut(s) | 192, 209, 749, 848, 1785, 1872 |
| BfmI | CTRYAG | 1 cut(s) | 469 |
| BfrI | CTTAAG | 1 cut(s) | 284 |
| BglII | AGATCT | 3 cut(s) | 434, 492, 1347 |
| BisI | GCNGC | 6 cut(s) | 104, 143, 206, 291, 735, 1782 |
| BlsI | GCNGC | 6 cut(s) | 105, 144, 207, 292, 736, 1783 |
| Bme1390I | CCNGG | 1 cut(s) | 1519 |
| BmgBI | CACGTC | 1 cut(s) | 151 |
| BmgT120I | GGNCC | 2 cut(s) | 400, 476 |
| BmiI | GGNNCC | 4 cut(s) | 309, 425, 913, 1443 |
| BmrFI | CCNGG | 1 cut(s) | 1519 |
| BoxI | GACNNNNGTC | 3 cut(s) | 178, 194, 1623 |
| BpiI | GAAGAC | 4 cut(s) | 11, 1074, 1251, 1461 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 333, 365 |
| BpmI | CTGGAG | 1 cut(s) | 410 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1770 |
| Bpu14I | TTCGAA | 1 cut(s) | 1031 |
| BpuEI | CTTGAG | 3 cut(s) | 380, 439, 1747 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1797 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 52, 82 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 570, 786, 841, 1078 |
| Bse1I | ACTGG | 3 cut(s) | 309, 711, 924 |
| Bse21I | CCTNAGG | 1 cut(s) | 648 |
| Bse3DI | GCAATG | 2 cut(s) | 1120, 1333 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1797 |
| BseBI | CCWGG | 1 cut(s) | 1519 |
| BseGI | GGATG | 4 cut(s) | 336, 413, 1186, 1550 |
| BseJI | GATNNNNATC | 1 cut(s) | 1797 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 570, 786, 841, 1078 |
| BseMI | GCAATG | 2 cut(s) | 1120, 1333 |
| BseMII | CTCAG | 5 cut(s) | 639, 1134, 1365, 1599, 1761 |
| BseNI | ACTGG | 3 cut(s) | 309, 711, 924 |
| BseRI | GAGGAG | 1 cut(s) | 704 |
| BseSI | GKGCMC | 1 cut(s) | 565 |
| BseXI | GCAGC | 3 cut(s) | 115, 277, 1793 |
| BsgI | GTGCAG | 1 cut(s) | 351 |
| Bsh1236I | CGCG | 1 cut(s) | 1580 |
| BshFI | GGCC | 5 cut(s) | 127, 134, 401, 477, 1517 |
| BsiHKAI | GWGCWC | 2 cut(s) | 50, 1578 |
| BsiSI | CCGG | 2 cut(s) | 100, 146 |
| BslFI | GGGAC | 2 cut(s) | 202, 1696 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 570, 786, 841, 1078 |
| BsmAI | GTCTC | 3 cut(s) | 1016, 1727, 1782 |
| BsmBI | CGTCTC | 2 cut(s) | 1727, 1782 |
| BsmFI | GGGAC | 2 cut(s) | 202, 1696 |
| BsmI | GAATGC | 1 cut(s) | 1428 |
| BsnI | GGCC | 5 cut(s) | 127, 134, 401, 477, 1517 |
| Bsp119I | TTCGAA | 1 cut(s) | 1031 |
| Bsp1286I | GDGCHC | 3 cut(s) | 50, 565, 1578 |
| BspACI | CCGC | 7 cut(s) | 143, 205, 326, 352, 702, 735, 1580 |
| BspANI | GGCC | 5 cut(s) | 127, 134, 401, 477, 1517 |
| BspCNI | CTCAG | 5 cut(s) | 640, 1135, 1364, 1600, 1762 |
| BspFNI | CGCG | 1 cut(s) | 1580 |
| BspLI | GGNNCC | 4 cut(s) | 309, 425, 913, 1443 |
| BspMAI | CTGCAG | 1 cut(s) | 473 |
| BspPI | GGATC | 6 cut(s) | 302, 315, 589, 669, 906, 919 |
| BspT104I | TTCGAA | 1 cut(s) | 1031 |
| BspTI | CTTAAG | 1 cut(s) | 284 |
| BsrBI | CCGCTC | 1 cut(s) | 205 |
| BsrDI | GCAATG | 2 cut(s) | 1120, 1333 |
| BsrI | ACTGG | 3 cut(s) | 309, 711, 924 |
| BssSI | CACGAG | 2 cut(s) | 15, 684 |
| Bst2BI | CACGAG | 2 cut(s) | 15, 684 |
| Bst2UI | CCWGG | 1 cut(s) | 1519 |
| Bst4CI | ACNGT | 3 cut(s) | 180, 875, 1460 |
| Bst6I | CTCTTC | 2 cut(s) | 315, 1506 |
| BstAFI | CTTAAG | 1 cut(s) | 284 |
| BstBI | TTCGAA | 1 cut(s) | 1031 |
| BstC8I | GCNNGC | 2 cut(s) | 1267, 1578 |
| BstDEI | CTNAG | 7 cut(s) | 9, 648, 671, 1143, 1351, 1608, 1770 |
| BstF5I | GGATG | 4 cut(s) | 336, 413, 1186, 1550 |
| BstFNI | CGCG | 1 cut(s) | 1580 |
| BstMAI | GTCTC | 3 cut(s) | 1016, 1727, 1782 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 151, 1611, 1817, 1826 |
| BstNI | CCWGG | 1 cut(s) | 1519 |
| BstNSI | RCATGY | 1 cut(s) | 1269 |
| BstPAI | GACNNNNGTC | 3 cut(s) | 178, 194, 1623 |
| BstSCI | CCNGG | 1 cut(s) | 1517 |
| BstSFI | CTRYAG | 1 cut(s) | 469 |
| BstSLI | GKGCMC | 1 cut(s) | 565 |
| BstUI | CGCG | 1 cut(s) | 1580 |
| BstV1I | GCAGC | 3 cut(s) | 115, 277, 1793 |
| BstV2I | GAAGAC | 4 cut(s) | 11, 1074, 1251, 1461 |
| BstX2I | RGATCY | 6 cut(s) | 307, 434, 492, 674, 911, 1347 |
| BstYI | RGATCY | 6 cut(s) | 307, 434, 492, 674, 911, 1347 |
| Bsu36I | CCTNAGG | 1 cut(s) | 648 |
| BsuRI | GGCC | 5 cut(s) | 127, 134, 401, 477, 1517 |
| BtgZI | GCGATG | 1 cut(s) | 260 |
| BtrI | CACGTC | 1 cut(s) | 151 |
| BtsCI | GGATG | 4 cut(s) | 336, 413, 1186, 1550 |
| BtsI | GCAGTG | 2 cut(s) | 478, 613 |
| BtsIMutI | CAGTG | 3 cut(s) | 478, 613, 931 |
| Cac8I | GCNNGC | 2 cut(s) | 1267, 1578 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1358 |
| Cfr13I | GGNCC | 2 cut(s) | 400, 476 |
| CseI | GACGC | 2 cut(s) | 1256, 1787 |
| Csp6I | GTAC | 2 cut(s) | 680, 721 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1316, 1351 |
| CviAII | CATG | 8 cut(s) | 781, 815, 945, 1187, 1241, 1266, 1636, 1640 |
| CviQI | GTAC | 2 cut(s) | 680, 721 |
| DdeI | CTNAG | 7 cut(s) | 9, 648, 671, 1143, 1351, 1608, 1770 |
| DraI | TTTAAA | 1 cut(s) | 301 |
| Eam1104I | CTCTTC | 2 cut(s) | 315, 1506 |
| EarI | CTCTTC | 2 cut(s) | 315, 1506 |
| EciI | GGCGGA | 1 cut(s) | 341 |
| Eco32I | GATATC | 1 cut(s) | 1588 |
| Eco57I | CTGAAG | 4 cut(s) | 336, 654, 1140, 1530 |
| Eco81I | CCTNAGG | 1 cut(s) | 648 |
| EcoO109I | RGGNCCY | 1 cut(s) | 400 |
| EcoRI | GAATTC | 1 cut(s) | 598 |
| EcoRII | CCWGG | 1 cut(s) | 1517 |
| EcoRV | GATATC | 1 cut(s) | 1588 |
| EcoT22I | ATGCAT | 3 cut(s) | 816, 1550, 1641 |
| Esp3I | CGTCTC | 2 cut(s) | 1727, 1782 |
| FaeI | CATG | 8 cut(s) | 784, 818, 948, 1190, 1244, 1269, 1639, 1643 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 570, 602, 691, 723, 1284, 1316, 1687, 1719 |
| FaqI | GGGAC | 2 cut(s) | 202, 1696 |
| FatI | CATG | 8 cut(s) | 780, 814, 944, 1186, 1240, 1265, 1635, 1639 |
| FauI | CCCGC | 1 cut(s) | 319 |
| Fnu4HI | GCNGC | 6 cut(s) | 104, 143, 206, 291, 735, 1782 |
| FokI | GGATG | 4 cut(s) | 323, 400, 1193, 1557 |
| Fsp4HI | GCNGC | 6 cut(s) | 104, 143, 206, 291, 735, 1782 |
| FspBI | CTAG | 6 cut(s) | 192, 209, 749, 848, 1785, 1872 |
| GluI | GCNGC | 6 cut(s) | 104, 143, 206, 291, 735, 1782 |
| GsuI | CTGGAG | 1 cut(s) | 410 |
| HaeIII | GGCC | 5 cut(s) | 127, 134, 401, 477, 1517 |
| HapII | CCGG | 2 cut(s) | 100, 146 |
| HgaI | GACGC | 2 cut(s) | 1256, 1787 |
| Hin1II | CATG | 8 cut(s) | 784, 818, 948, 1190, 1244, 1269, 1639, 1643 |
| HincII | GTYRAC | 1 cut(s) | 1087 |
| HindII | GTYRAC | 1 cut(s) | 1087 |
| HindIII | AAGCTT | 1 cut(s) | 1122 |
| HpaII | CCGG | 2 cut(s) | 100, 146 |
| HphI | GGTGA | 2 cut(s) | 814, 1875 |
| Hpy166II | GTNNAC | 2 cut(s) | 1055, 1087 |
| Hpy8I | GTNNAC | 2 cut(s) | 1055, 1087 |
| Hpy99I | CGWCG | 4 cut(s) | 26, 121, 1094, 1629 |
| HpyAV | CCTTC | 2 cut(s) | 325, 413 |
| HpyCH4III | ACNGT | 3 cut(s) | 180, 875, 1460 |
| HpyCH4IV | ACGT | 6 cut(s) | 116, 150, 446, 665, 1092, 1720 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 151, 1611, 1817, 1826 |
| HpyF3I | CTNAG | 7 cut(s) | 9, 648, 671, 1143, 1351, 1608, 1770 |
| HpySE526I | ACGT | 6 cut(s) | 116, 150, 446, 665, 1092, 1720 |
| Hsp92II | CATG | 8 cut(s) | 784, 818, 948, 1190, 1244, 1269, 1639, 1643 |
| LmnI | GCTCC | 3 cut(s) | 354, 429, 946 |
| Lsp1109I | GCAGC | 3 cut(s) | 115, 277, 1793 |
| MaeI | CTAG | 6 cut(s) | 192, 209, 749, 848, 1785, 1872 |
| MaeII | ACGT | 6 cut(s) | 116, 150, 446, 665, 1092, 1720 |
| MaeIII | GTNAC | 3 cut(s) | 17, 659, 1699 |
| MbiI | CCGCTC | 1 cut(s) | 205 |
| MflI | RGATCY | 6 cut(s) | 307, 434, 492, 674, 911, 1347 |
| MhlI | GDGCHC | 3 cut(s) | 50, 565, 1578 |
| MlyI | GAGTC | 3 cut(s) | 204, 760, 854 |
| MmeI | TCCRAC | 1 cut(s) | 854 |
| Mph1103I | ATGCAT | 3 cut(s) | 816, 1550, 1641 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1296, 1402 |
| MseI | TTAA | 6 cut(s) | 285, 300, 441, 536, 1175, 1365 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1644, 1806 |
| MspA1I | CMGCKG | 1 cut(s) | 737 |
| MspCI | CTTAAG | 1 cut(s) | 284 |
| MspI | CCGG | 2 cut(s) | 100, 146 |
| MspR9I | CCNGG | 1 cut(s) | 1519 |
| Mva1269I | GAATGC | 1 cut(s) | 1428 |
| MvaI | CCWGG | 1 cut(s) | 1519 |
| MvnI | CGCG | 1 cut(s) | 1580 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 151, 1611, 1817, 1826 |
| NlaIII | CATG | 8 cut(s) | 784, 818, 948, 1190, 1244, 1269, 1639, 1643 |
| NlaIV | GGNNCC | 4 cut(s) | 309, 425, 913, 1443 |
| NmuCI | GTSAC | 1 cut(s) | 17 |
| NsiI | ATGCAT | 3 cut(s) | 816, 1550, 1641 |
| NspI | RCATGY | 1 cut(s) | 1269 |
| NspV | TTCGAA | 1 cut(s) | 1031 |
| PaeI | GCATGC | 1 cut(s) | 1269 |
| PctI | GAATGC | 1 cut(s) | 1428 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1296, 1402 |
| PfeI | GAWTC | 8 cut(s) | 386, 819, 989, 1028, 1130, 1277, 1553, 1757 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 786 |
| PkrI | GCNGC | 6 cut(s) | 105, 144, 207, 292, 736, 1783 |
| PleI | GAGTC | 3 cut(s) | 203, 760, 854 |
| PpsI | GAGTC | 3 cut(s) | 203, 760, 854 |
| PshAI | GACNNNNGTC | 3 cut(s) | 178, 194, 1623 |
| Psp6I | CCWGG | 1 cut(s) | 1517 |
| PspGI | CCWGG | 1 cut(s) | 1517 |
| PspN4I | GGNNCC | 4 cut(s) | 309, 425, 913, 1443 |
| PspPI | GGNCC | 2 cut(s) | 400, 476 |
| PstI | CTGCAG | 1 cut(s) | 473 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1358 |
| PsuI | RGATCY | 6 cut(s) | 307, 434, 492, 674, 911, 1347 |
| RsaI | GTAC | 2 cut(s) | 681, 722 |
| RsaNI | GTAC | 2 cut(s) | 680, 721 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1644, 1806 |
| SaqAI | TTAA | 6 cut(s) | 285, 300, 441, 536, 1175, 1365 |
| SatI | GCNGC | 6 cut(s) | 104, 143, 206, 291, 735, 1782 |
| Sau96I | GGNCC | 2 cut(s) | 400, 476 |
| SchI | GAGTC | 3 cut(s) | 204, 760, 854 |
| ScrFI | CCNGG | 1 cut(s) | 1519 |
| SduI | GDGCHC | 3 cut(s) | 50, 565, 1578 |
| SfcI | CTRYAG | 1 cut(s) | 469 |
| SfuI | TTCGAA | 1 cut(s) | 1031 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1644, 1806 |
| SmlI | CTYRAG | 4 cut(s) | 284, 395, 418, 1726 |
| SmoI | CTYRAG | 4 cut(s) | 284, 395, 418, 1726 |
| SphI | GCATGC | 1 cut(s) | 1269 |
| SsiI | CCGC | 7 cut(s) | 143, 205, 326, 352, 702, 735, 1580 |
| SspI | AATATT | 3 cut(s) | 540, 1048, 1854 |
| SspMI | CTAG | 6 cut(s) | 192, 209, 749, 848, 1785, 1872 |
| StyD4I | CCNGG | 1 cut(s) | 1517 |
| TaaI | ACNGT | 3 cut(s) | 180, 875, 1460 |
| TaiI | ACGT | 6 cut(s) | 119, 153, 449, 668, 1095, 1723 |
| TaqI | TCGA | 5 cut(s) | 74, 276, 481, 809, 1031 |
| TauI | GCSGC | 3 cut(s) | 145, 208, 737 |
| TfiI | GAWTC | 8 cut(s) | 386, 819, 989, 1028, 1130, 1277, 1553, 1757 |
| Tru1I | TTAA | 6 cut(s) | 285, 300, 441, 536, 1175, 1365 |
| Tru9I | TTAA | 6 cut(s) | 285, 300, 441, 536, 1175, 1365 |
| TscAI | CASTG | 3 cut(s) | 478, 613, 931 |
| TseFI | GTSAC | 1 cut(s) | 17 |
| TseI | GCWGC | 3 cut(s) | 103, 290, 1781 |
| Tsp45I | GTSAC | 1 cut(s) | 17 |
| TspDTI | ATGAA | 5 cut(s) | 17, 750, 797, 1257, 1659 |
| TspGWI | ACGGA | 3 cut(s) | 667, 904, 1239 |
| TspRI | CASTG | 3 cut(s) | 478, 613, 931 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 786 |
| Vha464I | CTTAAG | 1 cut(s) | 284 |
| XapI | RAATTY | 5 cut(s) | 373, 598, 1147, 1398, 1836 |
| XceI | RCATGY | 1 cut(s) | 1269 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1296, 1402 |
| XspI | CTAG | 6 cut(s) | 192, 209, 749, 848, 1785, 1872 |
| Zsp2I | ATGCAT | 3 cut(s) | 816, 1550, 1641 |