Rw0G008640

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00331
Physical Location & Seq
Reverse (-)
15748 .. 18261
2514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G008640.1

Sequence Viewer

Length: 1902 bp
ATGAAGACTGAGCCTCGTGACGACGATCAATTCCATCTAACTATGAGCACAGCACTTCCTACCAAGCCTCCATCGAGCCATAGCACCAAAACACCCGTCCGGCAGCATAACACAACGTCGGCGAGGCCACAGGCCAGACTGCCGCCGGACGTGCGAGGAATTGCAGAAAACCGACAACGGTCTTTGGGGACTAGAGTCGCAGAGCGGCTAGGGTTTTGGGCATTTTTTTTAGTTGAGCTGATGGCGATGTGTCATTTGCAATCCTCTAAAATAGTCGATGATCTTAAGGCTGCAACATTTAAACTGGATCCATCTGAAGAAGAGGCGGGGAAGGTCATCCGAGAATTGCTCCGCCAAGATGCTTCTGCACCAAATTCAAAAGAAGATTCTGAACTCAAGGCCCTTCAACTTGCATCCTTGAGGCTCCAGAAAAGATCTATTAAGACGTTGCTACAAAAAGTTGCTGACTGCAGTGGCCCTCGAAAAAAGCAGATCTGGACATTTTTCTTGTATCTATTGAAGAAGTATGGAAACTTAATATTAGATGAGCAAACAGGGAGTGCCCCTGTGAGGCAACAAGGATCACTTGCTTCTTTGAATTCTGGCAGTGGTTTTGAGTGTAGTCAATATGCTGAAGTTGAACCTCCTGAGGAACAAAGTAACACGTTGCTTAGATCCGTACCTCGTGAGGAGTTTTCAAGCGGAACTTCCAGTTTGATGTACGAACCTGTTGCCGCTGATACCGAACTAGCCAACCTTTCATTGACTCCAAATAATGCCATGAAGTGGTCAATATCAGAGTGGTTTTCGATGCATGGAATCACCATTCCAACCCCAAGTATGGAACTAGAAACCCTTGACTCACGGGAAAACAGTTCCATTGATAGTTCAGTCAGTTCTATGTCATTTGGATCCGTTGCTACCAGTGTCTATTCTGATGCTCCATGCAATAAGACAGATGGCTTGGGTTTGGTTCAGACTGATGATGATTCTCTAAAATACCAATATGCTAACAAATGTGAGACAGATTCGAAATGTCTGTCTAATATTAGTAAACTCAAATGGGAAGACCAATGCAAGGTTGTTGACGACGTTCAAGACCATTTGAAATGCAATGCTGAAGCTTTGGATTCTATGTCATCTGAGAATTTTGCTGAACCTCTCATCAGATTTTTAAGGGATGCACATGATCTGGACGATGCCTTTGTGAGCAAAAACAGGAACGGAATACCTTATCTACATGAAGACGCATATAGTCTGTTGGCATGCTATCTTGATTCAAAGATAAAGGAAGAAGTTCTTGCCATAATGGAAACTCTGTTTAGCCACAAGCATTGCAGAACCAAGATCTCAGCATCTGCCCTTAAAGTTTTGTGCAATTTATCATTTGATAGAGGAATTTGTTCTCAAATGCGATCTTTGGAGTGCATTCCAAAATTGGTTCCTTTCTTGGAAGACGGTGTTCTTACAGGAAACTATATATCTATATTGAAACATTTGTGCGATACTGAAGAGGCCAGGATTTCTATTGCTGAAACTGATGGATGCATTGATTCTGTTGTTGAACATCAAGAGCACGCGGTTGATATCCCCCTTTCTTTATGCTCTGAGGGCATTGACTATCGTCGCTTGGTCATGCATGAGGGTGTTATTCCTGCTCTTGTCCTTTCATCTACAAATGGGACAGAGAGAGCAAGGGTAACTTCAATGGAAGTTCTACGTCTCTTGAGAGATACTGATTATGTCCATCAGCAAGAATCTGCTGAACCTGAGCCTGACGCAGCTAGAGACGATGTAAATCACTCAAATGCAGAGAAAGCATCAAAGGCATCGGGAATTTTCGGAAAGAAAATATTGATGTTCTCAAAACCTAGTTCCCTTTCACCAAGAAACAAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

633

Amino Acids

70.4

Weight (kDa)

5.38

Isoelectric Point (pI)

47.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 786
AccBSI CCGCTC 1 cut(s) 205
AccII CGCG 1 cut(s) 1580
AciI CCGC 7 cut(s) 143, 205, 326, 352, 702, 735, 1580
AclWI GGATC 6 cut(s) 302, 315, 589, 669, 906, 919
AcsI RAATTY 5 cut(s) 373, 598, 1147, 1398, 1836
AcuI CTGAAG 4 cut(s) 336, 654, 1140, 1530
AfaI GTAC 2 cut(s) 681, 722
AfiI CCNNNNNNNGG 4 cut(s) 570, 786, 841, 1078
AflII CTTAAG 1 cut(s) 284
AflIII ACRYGT 1 cut(s) 663
AjiI CACGTC 1 cut(s) 151
AjnI CCWGG 1 cut(s) 1517
AluBI AGCT 3 cut(s) 238, 1124, 1784
AluI AGCT 3 cut(s) 238, 1124, 1784
Alw21I GWGCWC 2 cut(s) 50, 1578
Alw26I GTCTC 3 cut(s) 1016, 1727, 1782
AlwI GGATC 6 cut(s) 302, 315, 589, 669, 906, 919
AlwNI CAGNNNCTG 1 cut(s) 1358
AoxI GGCC 5 cut(s) 125, 132, 399, 475, 1515
ApeKI GCWGC 3 cut(s) 103, 290, 1781
ApoI RAATTY 5 cut(s) 373, 598, 1147, 1398, 1836
ArsI GACNNNNNNTTYG 6 cut(s) 81, 113, 1025, 1057, 1187, 1219
Asp700I GAANNNNTTC 2 cut(s) 1296, 1402
AspS9I GGNCC 2 cut(s) 400, 476
AsuHPI GGTGA 2 cut(s) 814, 1875
AsuII TTCGAA 1 cut(s) 1031
AxyI CCTNAGG 1 cut(s) 648
BaeGI GKGCMC 1 cut(s) 565
BamHI GGATCC 2 cut(s) 307, 911
BauI CACGAG 2 cut(s) 15, 684
BbsI GAAGAC 4 cut(s) 11, 1074, 1251, 1461
Bbv12I GWGCWC 2 cut(s) 50, 1578
BbvI GCAGC 3 cut(s) 115, 277, 1793
BccI CCATC 7 cut(s) 42, 79, 235, 319, 953, 1535, 1755
BcgI CGANNNNNNTGC 2 cut(s) 713, 747
BciT130I CCWGG 1 cut(s) 1519
BcoDI GTCTC 3 cut(s) 1016, 1727, 1782
BfaI CTAG 6 cut(s) 192, 209, 749, 848, 1785, 1872
BfmI CTRYAG 1 cut(s) 469
BfrI CTTAAG 1 cut(s) 284
BglII AGATCT 3 cut(s) 434, 492, 1347
BisI GCNGC 6 cut(s) 104, 143, 206, 291, 735, 1782
BlsI GCNGC 6 cut(s) 105, 144, 207, 292, 736, 1783
Bme1390I CCNGG 1 cut(s) 1519
BmgBI CACGTC 1 cut(s) 151
BmgT120I GGNCC 2 cut(s) 400, 476
BmiI GGNNCC 4 cut(s) 309, 425, 913, 1443
BmrFI CCNGG 1 cut(s) 1519
BoxI GACNNNNGTC 3 cut(s) 178, 194, 1623
BpiI GAAGAC 4 cut(s) 11, 1074, 1251, 1461
BplI GAGNNNNNCTC 2 cut(s) 333, 365
BpmI CTGGAG 1 cut(s) 410
Bpu10I CCTNAGC 1 cut(s) 1770
Bpu14I TTCGAA 1 cut(s) 1031
BpuEI CTTGAG 3 cut(s) 380, 439, 1747
BsaBI GATNNNNATC 1 cut(s) 1797
BsaXI ACNNNNNCTCC 2 cut(s) 52, 82
Bsc4I CCNNNNNNNGG 4 cut(s) 570, 786, 841, 1078
Bse1I ACTGG 3 cut(s) 309, 711, 924
Bse21I CCTNAGG 1 cut(s) 648
Bse3DI GCAATG 2 cut(s) 1120, 1333
Bse8I GATNNNNATC 1 cut(s) 1797
BseBI CCWGG 1 cut(s) 1519
BseGI GGATG 4 cut(s) 336, 413, 1186, 1550
BseJI GATNNNNATC 1 cut(s) 1797
BseLI CCNNNNNNNGG 4 cut(s) 570, 786, 841, 1078
BseMI GCAATG 2 cut(s) 1120, 1333
BseMII CTCAG 5 cut(s) 639, 1134, 1365, 1599, 1761
BseNI ACTGG 3 cut(s) 309, 711, 924
BseRI GAGGAG 1 cut(s) 704
BseSI GKGCMC 1 cut(s) 565
BseXI GCAGC 3 cut(s) 115, 277, 1793
BsgI GTGCAG 1 cut(s) 351
Bsh1236I CGCG 1 cut(s) 1580
BshFI GGCC 5 cut(s) 127, 134, 401, 477, 1517
BsiHKAI GWGCWC 2 cut(s) 50, 1578
BsiSI CCGG 2 cut(s) 100, 146
BslFI GGGAC 2 cut(s) 202, 1696
BslI CCNNNNNNNGG 4 cut(s) 570, 786, 841, 1078
BsmAI GTCTC 3 cut(s) 1016, 1727, 1782
BsmBI CGTCTC 2 cut(s) 1727, 1782
BsmFI GGGAC 2 cut(s) 202, 1696
BsmI GAATGC 1 cut(s) 1428
BsnI GGCC 5 cut(s) 127, 134, 401, 477, 1517
Bsp119I TTCGAA 1 cut(s) 1031
Bsp1286I GDGCHC 3 cut(s) 50, 565, 1578
BspACI CCGC 7 cut(s) 143, 205, 326, 352, 702, 735, 1580
BspANI GGCC 5 cut(s) 127, 134, 401, 477, 1517
BspCNI CTCAG 5 cut(s) 640, 1135, 1364, 1600, 1762
BspFNI CGCG 1 cut(s) 1580
BspLI GGNNCC 4 cut(s) 309, 425, 913, 1443
BspMAI CTGCAG 1 cut(s) 473
BspPI GGATC 6 cut(s) 302, 315, 589, 669, 906, 919
BspT104I TTCGAA 1 cut(s) 1031
BspTI CTTAAG 1 cut(s) 284
BsrBI CCGCTC 1 cut(s) 205
BsrDI GCAATG 2 cut(s) 1120, 1333
BsrI ACTGG 3 cut(s) 309, 711, 924
BssSI CACGAG 2 cut(s) 15, 684
Bst2BI CACGAG 2 cut(s) 15, 684
Bst2UI CCWGG 1 cut(s) 1519
Bst4CI ACNGT 3 cut(s) 180, 875, 1460
Bst6I CTCTTC 2 cut(s) 315, 1506
BstAFI CTTAAG 1 cut(s) 284
BstBI TTCGAA 1 cut(s) 1031
BstC8I GCNNGC 2 cut(s) 1267, 1578
BstDEI CTNAG 7 cut(s) 9, 648, 671, 1143, 1351, 1608, 1770
BstF5I GGATG 4 cut(s) 336, 413, 1186, 1550
BstFNI CGCG 1 cut(s) 1580
BstMAI GTCTC 3 cut(s) 1016, 1727, 1782
BstMWI GCNNNNNNNGC 4 cut(s) 151, 1611, 1817, 1826
BstNI CCWGG 1 cut(s) 1519
BstNSI RCATGY 1 cut(s) 1269
BstPAI GACNNNNGTC 3 cut(s) 178, 194, 1623
BstSCI CCNGG 1 cut(s) 1517
BstSFI CTRYAG 1 cut(s) 469
BstSLI GKGCMC 1 cut(s) 565
BstUI CGCG 1 cut(s) 1580
BstV1I GCAGC 3 cut(s) 115, 277, 1793
BstV2I GAAGAC 4 cut(s) 11, 1074, 1251, 1461
BstX2I RGATCY 6 cut(s) 307, 434, 492, 674, 911, 1347
BstYI RGATCY 6 cut(s) 307, 434, 492, 674, 911, 1347
Bsu36I CCTNAGG 1 cut(s) 648
BsuRI GGCC 5 cut(s) 127, 134, 401, 477, 1517
BtgZI GCGATG 1 cut(s) 260
BtrI CACGTC 1 cut(s) 151
BtsCI GGATG 4 cut(s) 336, 413, 1186, 1550
BtsI GCAGTG 2 cut(s) 478, 613
BtsIMutI CAGTG 3 cut(s) 478, 613, 931
Cac8I GCNNGC 2 cut(s) 1267, 1578
CaiI CAGNNNCTG 1 cut(s) 1358
Cfr13I GGNCC 2 cut(s) 400, 476
CseI GACGC 2 cut(s) 1256, 1787
Csp6I GTAC 2 cut(s) 680, 721
CspCI CAANNNNNGTGG 2 cut(s) 1316, 1351
CviAII CATG 8 cut(s) 781, 815, 945, 1187, 1241, 1266, 1636, 1640
CviQI GTAC 2 cut(s) 680, 721
DdeI CTNAG 7 cut(s) 9, 648, 671, 1143, 1351, 1608, 1770
DraI TTTAAA 1 cut(s) 301
Eam1104I CTCTTC 2 cut(s) 315, 1506
EarI CTCTTC 2 cut(s) 315, 1506
EciI GGCGGA 1 cut(s) 341
Eco32I GATATC 1 cut(s) 1588
Eco57I CTGAAG 4 cut(s) 336, 654, 1140, 1530
Eco81I CCTNAGG 1 cut(s) 648
EcoO109I RGGNCCY 1 cut(s) 400
EcoRI GAATTC 1 cut(s) 598
EcoRII CCWGG 1 cut(s) 1517
EcoRV GATATC 1 cut(s) 1588
EcoT22I ATGCAT 3 cut(s) 816, 1550, 1641
Esp3I CGTCTC 2 cut(s) 1727, 1782
FaeI CATG 8 cut(s) 784, 818, 948, 1190, 1244, 1269, 1639, 1643
FalI AAGNNNNNCTT 8 cut(s) 570, 602, 691, 723, 1284, 1316, 1687, 1719
FaqI GGGAC 2 cut(s) 202, 1696
FatI CATG 8 cut(s) 780, 814, 944, 1186, 1240, 1265, 1635, 1639
FauI CCCGC 1 cut(s) 319
Fnu4HI GCNGC 6 cut(s) 104, 143, 206, 291, 735, 1782
FokI GGATG 4 cut(s) 323, 400, 1193, 1557
Fsp4HI GCNGC 6 cut(s) 104, 143, 206, 291, 735, 1782
FspBI CTAG 6 cut(s) 192, 209, 749, 848, 1785, 1872
GluI GCNGC 6 cut(s) 104, 143, 206, 291, 735, 1782
GsuI CTGGAG 1 cut(s) 410
HaeIII GGCC 5 cut(s) 127, 134, 401, 477, 1517
HapII CCGG 2 cut(s) 100, 146
HgaI GACGC 2 cut(s) 1256, 1787
Hin1II CATG 8 cut(s) 784, 818, 948, 1190, 1244, 1269, 1639, 1643
HincII GTYRAC 1 cut(s) 1087
HindII GTYRAC 1 cut(s) 1087
HindIII AAGCTT 1 cut(s) 1122
HpaII CCGG 2 cut(s) 100, 146
HphI GGTGA 2 cut(s) 814, 1875
Hpy166II GTNNAC 2 cut(s) 1055, 1087
Hpy8I GTNNAC 2 cut(s) 1055, 1087
Hpy99I CGWCG 4 cut(s) 26, 121, 1094, 1629
HpyAV CCTTC 2 cut(s) 325, 413
HpyCH4III ACNGT 3 cut(s) 180, 875, 1460
HpyCH4IV ACGT 6 cut(s) 116, 150, 446, 665, 1092, 1720
HpyF10VI GCNNNNNNNGC 4 cut(s) 151, 1611, 1817, 1826
HpyF3I CTNAG 7 cut(s) 9, 648, 671, 1143, 1351, 1608, 1770
HpySE526I ACGT 6 cut(s) 116, 150, 446, 665, 1092, 1720
Hsp92II CATG 8 cut(s) 784, 818, 948, 1190, 1244, 1269, 1639, 1643
LmnI GCTCC 3 cut(s) 354, 429, 946
Lsp1109I GCAGC 3 cut(s) 115, 277, 1793
MaeI CTAG 6 cut(s) 192, 209, 749, 848, 1785, 1872
MaeII ACGT 6 cut(s) 116, 150, 446, 665, 1092, 1720
MaeIII GTNAC 3 cut(s) 17, 659, 1699
MbiI CCGCTC 1 cut(s) 205
MflI RGATCY 6 cut(s) 307, 434, 492, 674, 911, 1347
MhlI GDGCHC 3 cut(s) 50, 565, 1578
MlyI GAGTC 3 cut(s) 204, 760, 854
MmeI TCCRAC 1 cut(s) 854
Mph1103I ATGCAT 3 cut(s) 816, 1550, 1641
MroXI GAANNNNTTC 2 cut(s) 1296, 1402
MseI TTAA 6 cut(s) 285, 300, 441, 536, 1175, 1365
MslI CAYNNNNRTG 2 cut(s) 1644, 1806
MspA1I CMGCKG 1 cut(s) 737
MspCI CTTAAG 1 cut(s) 284
MspI CCGG 2 cut(s) 100, 146
MspR9I CCNGG 1 cut(s) 1519
Mva1269I GAATGC 1 cut(s) 1428
MvaI CCWGG 1 cut(s) 1519
MvnI CGCG 1 cut(s) 1580
MwoI GCNNNNNNNGC 4 cut(s) 151, 1611, 1817, 1826
NlaIII CATG 8 cut(s) 784, 818, 948, 1190, 1244, 1269, 1639, 1643
NlaIV GGNNCC 4 cut(s) 309, 425, 913, 1443
NmuCI GTSAC 1 cut(s) 17
NsiI ATGCAT 3 cut(s) 816, 1550, 1641
NspI RCATGY 1 cut(s) 1269
NspV TTCGAA 1 cut(s) 1031
PaeI GCATGC 1 cut(s) 1269
PctI GAATGC 1 cut(s) 1428
PdmI GAANNNNTTC 2 cut(s) 1296, 1402
PfeI GAWTC 8 cut(s) 386, 819, 989, 1028, 1130, 1277, 1553, 1757
PflMI CCANNNNNTGG 1 cut(s) 786
PkrI GCNGC 6 cut(s) 105, 144, 207, 292, 736, 1783
PleI GAGTC 3 cut(s) 203, 760, 854
PpsI GAGTC 3 cut(s) 203, 760, 854
PshAI GACNNNNGTC 3 cut(s) 178, 194, 1623
Psp6I CCWGG 1 cut(s) 1517
PspGI CCWGG 1 cut(s) 1517
PspN4I GGNNCC 4 cut(s) 309, 425, 913, 1443
PspPI GGNCC 2 cut(s) 400, 476
PstI CTGCAG 1 cut(s) 473
PstNI CAGNNNCTG 1 cut(s) 1358
PsuI RGATCY 6 cut(s) 307, 434, 492, 674, 911, 1347
RsaI GTAC 2 cut(s) 681, 722
RsaNI GTAC 2 cut(s) 680, 721
RseI CAYNNNNRTG 2 cut(s) 1644, 1806
SaqAI TTAA 6 cut(s) 285, 300, 441, 536, 1175, 1365
SatI GCNGC 6 cut(s) 104, 143, 206, 291, 735, 1782
Sau96I GGNCC 2 cut(s) 400, 476
SchI GAGTC 3 cut(s) 204, 760, 854
ScrFI CCNGG 1 cut(s) 1519
SduI GDGCHC 3 cut(s) 50, 565, 1578
SfcI CTRYAG 1 cut(s) 469
SfuI TTCGAA 1 cut(s) 1031
SmiMI CAYNNNNRTG 2 cut(s) 1644, 1806
SmlI CTYRAG 4 cut(s) 284, 395, 418, 1726
SmoI CTYRAG 4 cut(s) 284, 395, 418, 1726
SphI GCATGC 1 cut(s) 1269
SsiI CCGC 7 cut(s) 143, 205, 326, 352, 702, 735, 1580
SspI AATATT 3 cut(s) 540, 1048, 1854
SspMI CTAG 6 cut(s) 192, 209, 749, 848, 1785, 1872
StyD4I CCNGG 1 cut(s) 1517
TaaI ACNGT 3 cut(s) 180, 875, 1460
TaiI ACGT 6 cut(s) 119, 153, 449, 668, 1095, 1723
TaqI TCGA 5 cut(s) 74, 276, 481, 809, 1031
TauI GCSGC 3 cut(s) 145, 208, 737
TfiI GAWTC 8 cut(s) 386, 819, 989, 1028, 1130, 1277, 1553, 1757
Tru1I TTAA 6 cut(s) 285, 300, 441, 536, 1175, 1365
Tru9I TTAA 6 cut(s) 285, 300, 441, 536, 1175, 1365
TscAI CASTG 3 cut(s) 478, 613, 931
TseFI GTSAC 1 cut(s) 17
TseI GCWGC 3 cut(s) 103, 290, 1781
Tsp45I GTSAC 1 cut(s) 17
TspDTI ATGAA 5 cut(s) 17, 750, 797, 1257, 1659
TspGWI ACGGA 3 cut(s) 667, 904, 1239
TspRI CASTG 3 cut(s) 478, 613, 931
Van91I CCANNNNNTGG 1 cut(s) 786
Vha464I CTTAAG 1 cut(s) 284
XapI RAATTY 5 cut(s) 373, 598, 1147, 1398, 1836
XceI RCATGY 1 cut(s) 1269
XmnI GAANNNNTTC 2 cut(s) 1296, 1402
XspI CTAG 6 cut(s) 192, 209, 749, 848, 1785, 1872
Zsp2I ATGCAT 3 cut(s) 816, 1550, 1641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.