Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006415.1

Orthogroup ID

OG0004305

Physical Location & Seq

Genomic Coordinates Reverse (-)

59837 .. 67454

Gene Structure 7618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006415.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

atgtctgcatcccattaccattggtacacctcggagttcgccgacccacctcaaatcctccatgtatacgacaccgttttccatggcttctctgcaactctcacctctgaccaagttgcctccctcagccaacaccctgccgttctccacgtcttcgaagacggccgccgccagctccacaccacccgctcgccgcagttcctgggcctaagaaaccagaaggggctatggtcggaatcggactactgctacgatgccatcgtcgaggttttcgatactggagtttggccggagcgtcggagcttttctgatagcaatctcggtcctgttccgaagcggtggagaggggtctgtgagaccggagttaaatttacagctcggaattgcaataagaagctgatcggagctcagttcttcatcaaaggtcatgaagccgccgacattaaccgcaatcaactgctcaggggcaataatttcaaacgccggattccggtcactggtcttcggattctggtcaccgcagtcgccggtcggccaccagtcacgggagtccgacaaggtgcaagtgaaggcagggattttgacagtgagtgcgcaggaactttgacagcaaaagccatttcatcgctgggatttggtggacaagggaagtttgagtatcttagaggcaagggttgcgaatttgtaggtatggttttctctgagatttatgacatgatttcagggaagtttgagtatcttagaggcaagggttgcgaatttgtaggtatggttttctctgagatttatgacatgatttcaggtatgtccagaactacaaggaaaaggagaagttggagcgaaaaggagaagttggagcataagcccttgagtagctccgtccctgacggcaaccccttgccgtcgctaataagcttgcgacggtgcatttgccgtcgcaaataccaatggcgacgcccccaacgacatcggcgcaattgccgtcgcctggccgtcgccattgatctttcgcgacggcaatttcactttccgcgacggcaccttgccgtggcaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

352

Amino Acids

40.14

Weight (kDa)

9.94

Isoelectric Point (pI)

62.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34980
fragaria_vesca	FvH4_2g01410 FvH4_3g19440
malus_domestica	MD05G1120100.v1.1 MD10G1123500.v1.1
prunus_persica	Prupe.8G164000_v2.0.a1
pyrus_communis	pycom05g11390 pycom10g10580
rosa_chinensis	RchiOBHm_Chr6g0244021 RchiOBHm_Chr6g0252351 RchiOBHm_Chr6g0252361
rosa_laevigata	RLG00000015390 RLG00000029339
rosa_multiflora	Rmu_co8423929.1_g000001 Rmu_sc0001251.1_g000002 Rmu_sc0006415.1_g000012 Rmu_sc0006711.1_g000006 Rmu_sc0007419.1_g000002
rosa_roxburghii	Rroxscaffold_6G00388820 Rroxscaffold_6G00388840
rosa_rugosa	Rorug05G0223500 Rorug05G0506700 Rorug05G0515900
rosa_samantha	Rh1CG388200 Rh2AG211900 Rh3DG088300 Rh5BG286100 Rh5DG294800 Rh6AG021200 Rh6CG013400 Rh6DG014700
rosa_wichuraiana	Rw6G001740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	595
AccB1I	GGYRCC	1 cut(s)	1038
AccBSI	CCGCTC	1 cut(s)	189
AccI	GTMKAC	1 cut(s)	66
AccII	CGCG	2 cut(s)	1012, 1033
AciI	CCGC	9 cut(s)	166, 169, 187, 194, 337, 435, 448, 519, 1031
AcoI	YGGCCR	4 cut(s)	163, 287, 533, 990
AcsI	RAATTY	3 cut(s)	368, 680, 758
AcyI	GRCGYC	1 cut(s)	955
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	5 cut(s)	490, 497, 545, 988, 1048
AgsI	TTSAA	1 cut(s)	478
AjiI	CACGTC	1 cut(s)	151
AjnI	CCWGG	2 cut(s)	201, 987
AluBI	AGCT	7 cut(s)	175, 303, 377, 397, 407, 876, 915
AluI	AGCT	7 cut(s)	175, 303, 377, 397, 407, 876, 915
Alw21I	GWGCWC	1 cut(s)	409
Alw26I	GTCTC	1 cut(s)	350
AlwNI	CAGNNNCTG	1 cut(s)	202
AoxI	GGCC	5 cut(s)	163, 205, 287, 533, 990
ApoI	RAATTY	3 cut(s)	368, 680, 758
ArsI	GACNNNNNNTTYG	2 cut(s)	912, 944
AspLEI	GCGC	2 cut(s)	596, 975
AspS9I	GGNCC	2 cut(s)	205, 323
AsuHPI	GGTGA	2 cut(s)	94, 508
AsuII	TTCGAA	1 cut(s)	156
AvaII	GGWCC	1 cut(s)	323
BaeI	ACNNNNGTAYC	2 cut(s)	267, 300
BanI	GGYRCC	1 cut(s)	1038
BanII	GRGCYC	1 cut(s)	409
BbsI	GAAGAC	3 cut(s)	145, 165, 494
Bbv12I	GWGCWC	1 cut(s)	409
BbvCI	CCTCAGC	1 cut(s)	125
BccI	CCATC	1 cut(s)	266
BciT130I	CCWGG	2 cut(s)	203, 989
BcoDI	GTCTC	1 cut(s)	350
BisI	GCNGC	4 cut(s)	166, 169, 194, 435
BlsI	GCNGC	4 cut(s)	167, 170, 195, 436
Bme1390I	CCNGG	2 cut(s)	203, 989
Bme18I	GGWCC	1 cut(s)	323
BmgBI	CACGTC	1 cut(s)	151
BmgT120I	GGNCC	2 cut(s)	205, 323
BmiI	GGNNCC	1 cut(s)	1040
BmrFI	CCNGG	2 cut(s)	203, 989
BmsI	GCATC	2 cut(s)	17, 244
BpiI	GAAGAC	3 cut(s)	145, 165, 494
BpmI	CTGGAG	1 cut(s)	300
Bpu10I	CCTNAGC	2 cut(s)	125, 461
Bpu14I	TTCGAA	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	889
BsaBI	GATNNNNATC	1 cut(s)	315
BsaHI	GRCGYC	1 cut(s)	955
BsaI	GGTCTC	1 cut(s)	350
BsaJI	CCNNGG	4 cut(s)	30, 82, 202, 1047
BsaWI	WCCGGW	2 cut(s)	359, 490
Bsc4I	CCNNNNNNNGG	5 cut(s)	490, 497, 545, 988, 1048
Bse118I	RCCGGY	1 cut(s)	527
Bse1I	ACTGG	3 cut(s)	283, 502, 539
Bse8I	GATNNNNATC	1 cut(s)	315
BseBI	CCWGG	2 cut(s)	203, 989
BseDI	CCNNGG	4 cut(s)	30, 82, 202, 1047
BseGI	GGATG	1 cut(s)	8
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	5 cut(s)	490, 497, 545, 988, 1048
BseMII	CTCAG	5 cut(s)	139, 422, 475, 693, 771
BseNI	ACTGG	3 cut(s)	283, 502, 539
BseX3I	CGGCCG	1 cut(s)	163
BseYI	CCCAGC	1 cut(s)	628
Bsh1236I	CGCG	2 cut(s)	1012, 1033
Bsh1285I	CGRYCG	2 cut(s)	166, 532
BshFI	GGCC	5 cut(s)	165, 207, 289, 535, 992
BshNI	GGYRCC	1 cut(s)	1038
BsiEI	CGRYCG	2 cut(s)	166, 532
BsiHKAI	GWGCWC	1 cut(s)	409
BsiSI	CCGG	5 cut(s)	290, 360, 484, 491, 528
BslFI	GGGAC	1 cut(s)	866
BslI	CCNNNNNNNGG	5 cut(s)	490, 497, 545, 988, 1048
BsmAI	GTCTC	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	866
BsnI	GGCC	5 cut(s)	165, 207, 289, 535, 992
Bso31I	GGTCTC	1 cut(s)	350
Bsp119I	TTCGAA	1 cut(s)	156
Bsp1286I	GDGCHC	1 cut(s)	409
Bsp143I	GATC	2 cut(s)	399, 1003
Bsp19I	CCATGG	1 cut(s)	82
Bsp68I	TCGCGA	1 cut(s)	1012
BspACI	CCGC	9 cut(s)	166, 169, 187, 194, 337, 435, 448, 519, 1031
BspANI	GGCC	5 cut(s)	165, 207, 289, 535, 992
BspCNI	CTCAG	5 cut(s)	138, 421, 474, 694, 772
BspFNI	CGCG	2 cut(s)	1012, 1033
BspHI	TCATGA	1 cut(s)	427
BspLI	GGNNCC	1 cut(s)	1040
BspT104I	TTCGAA	1 cut(s)	156
BspT107I	GGYRCC	1 cut(s)	1038
BspTNI	GGTCTC	1 cut(s)	350
BsrBI	CCGCTC	1 cut(s)	189
BsrFI	RCCGGY	1 cut(s)	527
BsrI	ACTGG	3 cut(s)	283, 502, 539
BssAI	RCCGGY	1 cut(s)	527
BssECI	CCNNGG	4 cut(s)	30, 82, 202, 1047
BssMI	GATC	2 cut(s)	399, 1003
BssNAI	GTATAC	1 cut(s)	67
BssNI	GRCGYC	1 cut(s)	955
BssT1I	CCWWGG	1 cut(s)	82
Bst1107I	GTATAC	1 cut(s)	67
Bst2UI	CCWGG	2 cut(s)	203, 989
Bst4CI	ACNGT	3 cut(s)	76, 587, 924
BstACI	GRCGYC	1 cut(s)	955
BstAPI	GCANNNNNTGC	2 cut(s)	675, 753
BstBI	TTCGAA	1 cut(s)	156
BstC8I	GCNNGC	3 cut(s)	173, 191, 917
BstDEI	CTNAG	8 cut(s)	125, 209, 408, 461, 662, 702, 740, 780
BstDSI	CCRYGG	2 cut(s)	82, 1047
BstEII	GGTNACC	1 cut(s)	514
BstF5I	GGATG	1 cut(s)	8
BstFNI	CGCG	2 cut(s)	1012, 1033
BstHHI	GCGC	2 cut(s)	596, 975
BstKTI	GATC	2 cut(s)	402, 1006
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	2 cut(s)	399, 1003
BstMCI	CGRYCG	2 cut(s)	166, 532
BstMWI	GCNNNNNNNGC	2 cut(s)	675, 753
BstNI	CCWGG	2 cut(s)	203, 989
BstPI	GGTNACC	1 cut(s)	514
BstSCI	CCNGG	2 cut(s)	201, 987
BstUI	CGCG	2 cut(s)	1012, 1033
BstV2I	GAAGAC	3 cut(s)	145, 165, 494
BstZ17I	GTATAC	1 cut(s)	67
BstZI	CGGCCG	1 cut(s)	163
BsuRI	GGCC	5 cut(s)	165, 207, 289, 535, 992
BtgI	CCRYGG	2 cut(s)	82, 1047
BtgZI	GCGATG	1 cut(s)	609
BtrI	CACGTC	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	8
BtsIMutI	CAGTG	2 cut(s)	495, 592
BtuMI	TCGCGA	1 cut(s)	1012
Cac8I	GCNNGC	3 cut(s)	173, 191, 917
CaiI	CAGNNNCTG	1 cut(s)	202
CciI	TCATGA	1 cut(s)	427
CfoI	GCGC	2 cut(s)	596, 975
Cfr10I	RCCGGY	1 cut(s)	527
Cfr13I	GGNCC	2 cut(s)	205, 323
CseI	GACGC	2 cut(s)	284, 963
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	5 cut(s)	62, 83, 428, 715, 793
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	8 cut(s)	125, 209, 408, 461, 662, 702, 740, 780
DpnI	GATC	2 cut(s)	401, 1005
DpnII	GATC	2 cut(s)	399, 1003
EaeI	YGGCCR	4 cut(s)	163, 287, 533, 990
EagI	CGGCCG	1 cut(s)	163
Ecl136II	GAGCTC	1 cut(s)	407
EclXI	CGGCCG	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	82
Eco24I	GRGCYC	1 cut(s)	409
Eco31I	GGTCTC	1 cut(s)	350
Eco47I	GGWCC	1 cut(s)	323
Eco52I	CGGCCG	1 cut(s)	163
Eco53kI	GAGCTC	1 cut(s)	407
Eco91I	GGTNACC	1 cut(s)	514
EcoICRI	GAGCTC	1 cut(s)	407
EcoO65I	GGTNACC	1 cut(s)	514
EcoRII	CCWGG	2 cut(s)	201, 987
EcoT14I	CCWWGG	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	5 cut(s)	65, 86, 431, 718, 796
FaqI	GGGAC	1 cut(s)	866
FatI	CATG	5 cut(s)	61, 82, 427, 714, 792
FauI	CCCGC	1 cut(s)	194
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	4 cut(s)	166, 169, 194, 435
FriOI	GRGCYC	1 cut(s)	409
Fsp4HI	GCNGC	4 cut(s)	166, 169, 194, 435
FspI	TGCGCA	1 cut(s)	595
GlaI	GCGC	2 cut(s)	595, 974
GluI	GCNGC	4 cut(s)	166, 169, 194, 435
GsaI	CCCAGC	1 cut(s)	632
GsuI	CTGGAG	1 cut(s)	300
HaeIII	GGCC	5 cut(s)	165, 207, 289, 535, 992
HapII	CCGG	5 cut(s)	290, 360, 484, 491, 528
HgaI	GACGC	2 cut(s)	284, 963
HhaI	GCGC	2 cut(s)	596, 975
Hin1I	GRCGYC	1 cut(s)	955
Hin1II	CATG	5 cut(s)	65, 86, 431, 718, 796
Hin6I	GCGC	2 cut(s)	594, 973
HinP1I	GCGC	2 cut(s)	594, 973
HindIII	AAGCTT	1 cut(s)	913
HinfI	GANTC	4 cut(s)	236, 487, 508, 549
HpaII	CCGG	5 cut(s)	290, 360, 484, 491, 528
HphI	GGTGA	2 cut(s)	94, 508
Hpy166II	GTNNAC	3 cut(s)	27, 67, 641
Hpy188III	TCNNGA	3 cut(s)	428, 810, 1011
Hpy8I	GTNNAC	3 cut(s)	27, 67, 641
HpyAV	CCTTC	2 cut(s)	214, 563
HpyCH4III	ACNGT	3 cut(s)	76, 587, 924
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	5 cut(s)	8, 95, 387, 563, 927
HpyF10VI	GCNNNNNNNGC	2 cut(s)	675, 753
HpyF3I	CTNAG	8 cut(s)	125, 209, 408, 461, 662, 702, 740, 780
HpySE526I	ACGT	1 cut(s)	150
Hsp92I	GRCGYC	1 cut(s)	955
Hsp92II	CATG	5 cut(s)	65, 86, 431, 718, 796
HspAI	GCGC	2 cut(s)	594, 973
Kzo9I	GATC	2 cut(s)	399, 1003
LmnI	GCTCC	7 cut(s)	180, 292, 300, 404, 837, 856, 881
LweI	GCATC	2 cut(s)	17, 244
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	3 cut(s)	493, 514, 541
MalI	GATC	2 cut(s)	401, 1005
MbiI	CCGCTC	1 cut(s)	189
MboI	GATC	2 cut(s)	399, 1003
MboII	GAAGA	4 cut(s)	145, 170, 406, 494
MfeI	CAATTG	1 cut(s)	976
MhlI	GDGCHC	1 cut(s)	409
MluCI	AATT	8 cut(s)	368, 382, 472, 680, 758, 976, 1019, 1053
MlyI	GAGTC	1 cut(s)	558
MmeI	TCCRAC	5 cut(s)	213, 278, 577, 815, 834
MseI	TTAA	2 cut(s)	366, 444
MspI	CCGG	5 cut(s)	290, 360, 484, 491, 528
MspR9I	CCNGG	2 cut(s)	203, 989
MunI	CAATTG	1 cut(s)	976
MvaI	CCWGG	2 cut(s)	203, 989
MvnI	CGCG	2 cut(s)	1012, 1033
MwoI	GCNNNNNNNGC	2 cut(s)	675, 753
NcoI	CCATGG	1 cut(s)	82
NdeII	GATC	2 cut(s)	399, 1003
NlaIII	CATG	5 cut(s)	65, 86, 431, 718, 796
NlaIV	GGNNCC	1 cut(s)	1040
NmuCI	GTSAC	3 cut(s)	493, 514, 541
NruI	TCGCGA	1 cut(s)	1012
NsbI	TGCGCA	1 cut(s)	595
NspV	TTCGAA	1 cut(s)	156
PagI	TCATGA	1 cut(s)	427
PcsI	WCGNNNNNNNCGW	3 cut(s)	258, 270, 961
PfeI	GAWTC	3 cut(s)	236, 487, 508
PkrI	GCNGC	4 cut(s)	167, 170, 195, 436
PleI	GAGTC	1 cut(s)	557
PpsI	GAGTC	1 cut(s)	557
Psp124BI	GAGCTC	1 cut(s)	409
Psp6I	CCWGG	2 cut(s)	201, 987
PspEI	GGTNACC	1 cut(s)	514
PspFI	CCCAGC	1 cut(s)	628
PspGI	CCWGG	2 cut(s)	201, 987
PspN4I	GGNNCC	1 cut(s)	1040
PspPI	GGNCC	2 cut(s)	205, 323
PstNI	CAGNNNCTG	1 cut(s)	202
RruI	TCGCGA	1 cut(s)	1012
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SacI	GAGCTC	1 cut(s)	409
SaqAI	TTAA	2 cut(s)	366, 444
SatI	GCNGC	4 cut(s)	166, 169, 194, 435
Sau3AI	GATC	2 cut(s)	399, 1003
Sau96I	GGNCC	2 cut(s)	205, 323
SchI	GAGTC	1 cut(s)	558
ScrFI	CCNGG	2 cut(s)	203, 989
SduI	GDGCHC	1 cut(s)	409
SfaNI	GCATC	2 cut(s)	17, 244
SfuI	TTCGAA	1 cut(s)	156
SinI	GGWCC	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	868
SmoI	CTYRAG	1 cut(s)	868
Sse9I	AATT	8 cut(s)	368, 382, 472, 680, 758, 976, 1019, 1053
SsiI	CCGC	9 cut(s)	166, 169, 187, 194, 337, 435, 448, 519, 1031
SstI	GAGCTC	1 cut(s)	409
StyD4I	CCNGG	2 cut(s)	201, 987
StyI	CCWWGG	1 cut(s)	82
TaaI	ACNGT	3 cut(s)	76, 587, 924
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	3 cut(s)	156, 264, 273
TaqII	GACCGA	1 cut(s)	311
TasI	AATT	8 cut(s)	368, 382, 472, 680, 758, 976, 1019, 1053
TauI	GCSGC	4 cut(s)	168, 171, 196, 437
TfiI	GAWTC	3 cut(s)	236, 487, 508
Tru1I	TTAA	2 cut(s)	366, 444
Tru9I	TTAA	2 cut(s)	366, 444
TscAI	CASTG	2 cut(s)	502, 592
TseFI	GTSAC	3 cut(s)	493, 514, 541
Tsp45I	GTSAC	3 cut(s)	493, 514, 541
TspDTI	ATGAA	3 cut(s)	406, 444, 612
TspGWI	ACGGA	1 cut(s)	868
TspRI	CASTG	2 cut(s)	502, 592
VpaK11BI	GGWCC	1 cut(s)	323
XapI	RAATTY	3 cut(s)	368, 680, 758
XcmI	CCANNNNNNNNNTGG	1 cut(s)	625
XmiI	GTMKAC	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.