Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007419.1

Orthogroup ID

OG0004305

Physical Location & Seq

Genomic Coordinates Reverse (-)

11964 .. 12482

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007419.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

atgtctgcatcccattaccactggtacacatcggagttcgccgacccacctcaaatcctccacatatacgacaccgttttccataggttctctgcaactctcacctctgaccaagttgcctccctcagccaacaccctgtcgttctccacctcttcgaagaccgccaccgccagctccacaccacccgctcgccgcagaatctaagtctagttccaaagcggtggagaggggtctgtgagaccagagttaaatttatagctcagaattgcaataataacttgttcggagctcggttcttcatcaaaggtcatgaagccgccgccaatgccggcggtccgataaccgcaatcaatggctcagttgaatggcggcgtgtagggaattggcaagggcgattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

133

Amino Acids

15.26

Weight (kDa)

9.77

Isoelectric Point (pI)

45.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34980
fragaria_vesca	FvH4_2g01410 FvH4_3g19440
malus_domestica	MD05G1120100.v1.1 MD10G1123500.v1.1
prunus_persica	Prupe.8G164000_v2.0.a1
pyrus_communis	pycom05g11390 pycom10g10580
rosa_chinensis	RchiOBHm_Chr6g0244021 RchiOBHm_Chr6g0252351 RchiOBHm_Chr6g0252361
rosa_laevigata	RLG00000015390 RLG00000029339
rosa_multiflora	Rmu_co8423929.1_g000001 Rmu_sc0001251.1_g000002 Rmu_sc0006415.1_g000012 Rmu_sc0006711.1_g000006 Rmu_sc0007419.1_g000002
rosa_roxburghii	Rroxscaffold_6G00388820 Rroxscaffold_6G00388840
rosa_rugosa	Rorug05G0223500 Rorug05G0506700 Rorug05G0515900
rosa_samantha	Rh1CG388200 Rh2AG211900 Rh3DG088300 Rh5BG286100 Rh5DG294800 Rh6AG021200 Rh6CG013400 Rh6DG014700
rosa_wichuraiana	Rw6G001740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	189
AcsI	RAATTY	1 cut(s)	251
AfaI	GTAC	1 cut(s)	26
AgsI	TTSAA	1 cut(s)	365
AluBI	AGCT	3 cut(s)	175, 260, 290
AluI	AGCT	3 cut(s)	175, 260, 290
Alw21I	GWGCWC	1 cut(s)	292
Alw26I	GTCTC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	251
AspS9I	GGNCC	1 cut(s)	335
AsuHPI	GGTGA	1 cut(s)	94
AsuII	TTCGAA	1 cut(s)	156
AvaII	GGWCC	1 cut(s)	335
BanII	GRGCYC	1 cut(s)	292
BbsI	GAAGAC	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	292
BbvCI	CCTCAGC	1 cut(s)	125
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	1 cut(s)	209
BisI	GCNGC	4 cut(s)	194, 318, 321, 371
BlsI	GCNGC	4 cut(s)	195, 319, 322, 372
Bme18I	GGWCC	1 cut(s)	335
BmgT120I	GGNCC	1 cut(s)	335
BmsI	GCATC	1 cut(s)	17
BpiI	GAAGAC	1 cut(s)	165
Bpu10I	CCTNAGC	1 cut(s)	125
Bpu14I	TTCGAA	1 cut(s)	156
BsaI	GGTCTC	1 cut(s)	233
Bse118I	RCCGGY	1 cut(s)	329
Bse1I	ACTGG	1 cut(s)	26
BseGI	GGATG	1 cut(s)	8
BseMII	CTCAG	3 cut(s)	139, 275, 372
BseNI	ACTGG	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	292
BsiSI	CCGG	1 cut(s)	330
BsmAI	GTCTC	1 cut(s)	233
Bso31I	GGTCTC	1 cut(s)	233
Bsp119I	TTCGAA	1 cut(s)	156
Bsp1286I	GDGCHC	1 cut(s)	292
BspCNI	CTCAG	3 cut(s)	138, 274, 371
BspHI	TCATGA	1 cut(s)	310
BspT104I	TTCGAA	1 cut(s)	156
BspTNI	GGTCTC	1 cut(s)	233
BsrBI	CCGCTC	1 cut(s)	189
BsrFI	RCCGGY	1 cut(s)	329
BsrI	ACTGG	1 cut(s)	26
BssAI	RCCGGY	1 cut(s)	329
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	158
BstBI	TTCGAA	1 cut(s)	156
BstC8I	GCNNGC	3 cut(s)	173, 191, 331
BstDEI	CTNAG	4 cut(s)	125, 203, 261, 358
BstF5I	GGATG	1 cut(s)	8
BstMAI	GTCTC	1 cut(s)	233
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstV2I	GAAGAC	1 cut(s)	165
BstXI	CCANNNNNNTGG	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	8
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	3 cut(s)	173, 191, 331
CciI	TCATGA	1 cut(s)	310
Cfr10I	RCCGGY	1 cut(s)	329
Cfr13I	GGNCC	1 cut(s)	335
CpoI	CGGWCCG	1 cut(s)	335
Csp6I	GTAC	1 cut(s)	25
CspI	CGGWCCG	1 cut(s)	335
CviAII	CATG	1 cut(s)	311
CviJI	RGCY	6 cut(s)	129, 175, 260, 290, 317, 357
CviKI_1	RGCY	6 cut(s)	129, 175, 260, 290, 317, 357
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	4 cut(s)	125, 203, 261, 358
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Ecl136II	GAGCTC	1 cut(s)	290
Eco24I	GRGCYC	1 cut(s)	292
Eco31I	GGTCTC	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	335
Eco53kI	GAGCTC	1 cut(s)	290
EcoICRI	GAGCTC	1 cut(s)	290
EcoT38I	GRGCYC	1 cut(s)	292
FaeI	CATG	1 cut(s)	314
FaiI	YATR	5 cut(s)	65, 67, 84, 257, 312
FatI	CATG	1 cut(s)	310
FauI	CCCGC	1 cut(s)	194
Fnu4HI	GCNGC	4 cut(s)	194, 318, 321, 371
FriOI	GRGCYC	1 cut(s)	292
Fsp4HI	GCNGC	4 cut(s)	194, 318, 321, 371
FspBI	CTAG	1 cut(s)	209
GluI	GCNGC	4 cut(s)	194, 318, 321, 371
HapII	CCGG	1 cut(s)	330
Hin1II	CATG	1 cut(s)	314
HinfI	GANTC	1 cut(s)	199
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188I	TCNGA	5 cut(s)	34, 109, 264, 287, 339
Hpy188III	TCNNGA	1 cut(s)	311
Hpy8I	GTNNAC	1 cut(s)	27
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	3 cut(s)	8, 95, 270
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpyF3I	CTNAG	4 cut(s)	125, 203, 261, 358
Hsp92II	CATG	1 cut(s)	314
KroI	GCCGGC	1 cut(s)	329
KroNI	GCCGGC	1 cut(s)	331
LmnI	GCTCC	2 cut(s)	180, 287
LpnPI	CCDG	5 cut(s)	7, 150, 185, 256, 343
LweI	GCATC	1 cut(s)	17
MaeI	CTAG	1 cut(s)	209
MbiI	CCGCTC	1 cut(s)	189
MboII	GAAGA	3 cut(s)	145, 170, 289
MhlI	GDGCHC	1 cut(s)	292
MluCI	AATT	3 cut(s)	251, 265, 382
MnlI	CCTC	7 cut(s)	60, 68, 115, 130, 134, 161, 221
MroNI	GCCGGC	1 cut(s)	329
MseI	TTAA	1 cut(s)	249
MspI	CCGG	1 cut(s)	330
MwoI	GCNNNNNNNGC	1 cut(s)	326
NaeI	GCCGGC	1 cut(s)	331
NgoMIV	GCCGGC	1 cut(s)	329
NlaIII	CATG	1 cut(s)	314
NspV	TTCGAA	1 cut(s)	156
PagI	TCATGA	1 cut(s)	310
PdiI	GCCGGC	1 cut(s)	331
PfeI	GAWTC	1 cut(s)	199
PkrI	GCNGC	4 cut(s)	195, 319, 322, 372
Psp124BI	GAGCTC	1 cut(s)	292
PspPI	GGNCC	1 cut(s)	335
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
Rsr2I	CGGWCCG	1 cut(s)	335
RsrII	CGGWCCG	1 cut(s)	335
SacI	GAGCTC	1 cut(s)	292
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	4 cut(s)	194, 318, 321, 371
Sau96I	GGNCC	1 cut(s)	335
SduI	GDGCHC	1 cut(s)	292
SetI	ASST	8 cut(s)	52, 89, 107, 153, 177, 262, 292, 310
SfaNI	GCATC	1 cut(s)	17
SfuI	TTCGAA	1 cut(s)	156
SinI	GGWCC	1 cut(s)	335
Sse9I	AATT	3 cut(s)	251, 265, 382
SspMI	CTAG	1 cut(s)	209
SstI	GAGCTC	1 cut(s)	292
TaaI	ACNGT	1 cut(s)	76
TaqI	TCGA	1 cut(s)	156
TasI	AATT	3 cut(s)	251, 265, 382
TauI	GCSGC	4 cut(s)	196, 320, 323, 373
TfiI	GAWTC	1 cut(s)	199
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	1 cut(s)	26
TspDTI	ATGAA	2 cut(s)	289, 327
TspRI	CASTG	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	335
XapI	RAATTY	1 cut(s)	251
XspI	CTAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.