Rroxscaffold_6G00388820

PA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0004305
Physical Location & Seq
Forward (+)
2083106 .. 2083381
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00388820.1

Sequence Viewer

Length: 276 bp
ATGGCTTCTCTGCAACTCTCACCTCCGACCAAGTTGCCTCCCTCGCCCAACACCCCGCTGTTCTCCACGTCTTCGAAGACCGCCGCCGCCACTCCACACCACCCGTTTGCCGCAGTTCCCGGGCCCGAGAAACTAGAAGGGGCTGTGGTCGGAATCGACTACAGCTCCGACGTCATCGTTGGGGTTTTCGATATCGGAGTTTGGCCGGAGCGTCGGAGCTTTTCCTATAGGAATCTCGGTCCGGTTCCGAAGTGGTGGAGAACAATTGGGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

91

Amino Acids

9.78

Weight (kDa)

9.3

Isoelectric Point (pI)

53.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 174
AciI CCGC 5 cut(s) 56, 81, 84, 87, 111
AcoI YGGCCR 1 cut(s) 203
AcyI GRCGYC 1 cut(s) 171
AjiI CACGTC 1 cut(s) 69
AluBI AGCT 2 cut(s) 165, 219
AluI AGCT 2 cut(s) 165, 219
Ama87I CYCGRG 2 cut(s) 119, 125
AoxI GGCC 3 cut(s) 122, 203, 269
ApaI GGGCCC 1 cut(s) 126
AspS9I GGNCC 4 cut(s) 122, 123, 239, 269
AsuC2I CCSGG 2 cut(s) 120, 121
AsuHPI GGTGA 1 cut(s) 12
AsuII TTCGAA 1 cut(s) 74
AvaI CYCGRG 2 cut(s) 119, 125
AvaII GGWCC 1 cut(s) 239
BaeGI GKGCMC 1 cut(s) 126
BanII GRGCYC 1 cut(s) 126
BbsI GAAGAC 2 cut(s) 63, 83
BcgI CGANNNNNNTGC 2 cut(s) 16, 50
BcnI CCSGG 2 cut(s) 120, 121
BfaI CTAG 1 cut(s) 134
BfmI CTRYAG 2 cut(s) 160, 226
BisI GCNGC 3 cut(s) 84, 87, 111
BlsI GCNGC 3 cut(s) 85, 88, 112
Bme1390I CCNGG 2 cut(s) 120, 121
Bme18I GGWCC 1 cut(s) 239
BmeT110I CYCGRG 2 cut(s) 119, 125
BmgBI CACGTC 1 cut(s) 69
BmgT120I GGNCC 4 cut(s) 122, 123, 239, 269
BmiI GGNNCC 2 cut(s) 124, 246
BmrFI CCNGG 2 cut(s) 120, 121
BpiI GAAGAC 2 cut(s) 63, 83
Bpu14I TTCGAA 1 cut(s) 74
BpuMI CCSGG 2 cut(s) 120, 121
BsaHI GRCGYC 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 119
BsaWI WCCGGW 1 cut(s) 241
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
BseDI CCNNGG 1 cut(s) 119
BseSI GKGCMC 1 cut(s) 126
BshFI GGCC 3 cut(s) 124, 205, 271
BsiHKCI CYCGRG 2 cut(s) 119, 125
BsiSI CCGG 3 cut(s) 120, 206, 242
BsnI GGCC 3 cut(s) 124, 205, 271
BsoBI CYCGRG 2 cut(s) 119, 125
Bsp119I TTCGAA 1 cut(s) 74
Bsp120I GGGCCC 1 cut(s) 122
Bsp1286I GDGCHC 1 cut(s) 126
BspACI CCGC 5 cut(s) 56, 81, 84, 87, 111
BspANI GGCC 3 cut(s) 124, 205, 271
BspLI GGNNCC 2 cut(s) 124, 246
BspT104I TTCGAA 1 cut(s) 74
BssECI CCNNGG 1 cut(s) 119
BssNI GRCGYC 1 cut(s) 171
BstACI GRCGYC 1 cut(s) 171
BstBI TTCGAA 1 cut(s) 74
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstSCI CCNGG 2 cut(s) 118, 119
BstSFI CTRYAG 2 cut(s) 160, 226
BstSLI GKGCMC 1 cut(s) 126
BstV2I GAAGAC 2 cut(s) 63, 83
BsuRI GGCC 3 cut(s) 124, 205, 271
BtrI CACGTC 1 cut(s) 69
Cfr13I GGNCC 4 cut(s) 122, 123, 239, 269
Cfr9I CCCGGG 1 cut(s) 119
CpoI CGGWCCG 1 cut(s) 239
CseI GACGC 1 cut(s) 200
CspI CGGWCCG 1 cut(s) 239
CviJI RGCY 7 cut(s) 5, 124, 143, 165, 205, 219, 271
CviKI_1 RGCY 7 cut(s) 5, 124, 143, 165, 205, 219, 271
EaeI YGGCCR 1 cut(s) 203
Eco24I GRGCYC 1 cut(s) 126
Eco32I GATATC 1 cut(s) 193
Eco47I GGWCC 1 cut(s) 239
Eco88I CYCGRG 2 cut(s) 119, 125
EcoRV GATATC 1 cut(s) 193
EcoT38I GRGCYC 1 cut(s) 126
FaiI YATR 1 cut(s) 228
FauI CCCGC 1 cut(s) 63
Fnu4HI GCNGC 3 cut(s) 84, 87, 111
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 3 cut(s) 84, 87, 111
FspBI CTAG 1 cut(s) 134
GluI GCNGC 3 cut(s) 84, 87, 111
HaeIII GGCC 3 cut(s) 124, 205, 271
HapII CCGG 3 cut(s) 120, 206, 242
HgaI GACGC 1 cut(s) 200
Hin1I GRCGYC 1 cut(s) 171
HinfI GANTC 2 cut(s) 153, 232
HpaII CCGG 3 cut(s) 120, 206, 242
HphI GGTGA 1 cut(s) 12
Hpy188I TCNGA 6 cut(s) 27, 152, 169, 197, 216, 249
Hpy99I CGWCG 2 cut(s) 173, 216
HpyAV CCTTC 1 cut(s) 131
HpyCH4IV ACGT 2 cut(s) 68, 171
HpyCH4V TGCA 1 cut(s) 13
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
HpySE526I ACGT 2 cut(s) 68, 171
Hsp92I GRCGYC 1 cut(s) 171
LmnI GCTCC 3 cut(s) 170, 208, 216
LpnPI CCDG 3 cut(s) 133, 219, 255
MaeI CTAG 1 cut(s) 134
MaeII ACGT 2 cut(s) 68, 171
MboII GAAGA 2 cut(s) 63, 88
MfeI CAATTG 1 cut(s) 264
MhlI GDGCHC 1 cut(s) 126
MluCI AATT 1 cut(s) 264
MmeI TCCRAC 4 cut(s) 50, 130, 192, 194
MnlI CCTC 3 cut(s) 33, 48, 52
MspA1I CMGCKG 1 cut(s) 58
MspI CCGG 3 cut(s) 120, 206, 242
MspR9I CCNGG 2 cut(s) 120, 121
MunI CAATTG 1 cut(s) 264
MwoI GCNNNNNNNGC 1 cut(s) 43
NciI CCSGG 2 cut(s) 120, 121
NlaIV GGNNCC 2 cut(s) 124, 246
NspV TTCGAA 1 cut(s) 74
PfeI GAWTC 2 cut(s) 153, 232
PkrI GCNGC 3 cut(s) 85, 88, 112
PspN4I GGNNCC 2 cut(s) 124, 246
PspOMI GGGCCC 1 cut(s) 122
PspPI GGNCC 4 cut(s) 122, 123, 239, 269
Rsr2I CGGWCCG 1 cut(s) 239
RsrII CGGWCCG 1 cut(s) 239
SatI GCNGC 3 cut(s) 84, 87, 111
Sau96I GGNCC 4 cut(s) 122, 123, 239, 269
ScrFI CCNGG 2 cut(s) 120, 121
SduI GDGCHC 1 cut(s) 126
SetI ASST 5 cut(s) 25, 71, 167, 174, 221
SfcI CTRYAG 2 cut(s) 160, 226
SfuI TTCGAA 1 cut(s) 74
SinI GGWCC 1 cut(s) 239
SmaI CCCGGG 1 cut(s) 121
Sse9I AATT 1 cut(s) 264
SsiI CCGC 5 cut(s) 56, 81, 84, 87, 111
SspMI CTAG 1 cut(s) 134
StyD4I CCNGG 2 cut(s) 118, 119
TaiI ACGT 2 cut(s) 71, 174
TaqI TCGA 3 cut(s) 74, 156, 189
TaqII GACCGA 1 cut(s) 227
TasI AATT 1 cut(s) 264
TauI GCSGC 3 cut(s) 86, 89, 113
TfiI GAWTC 2 cut(s) 153, 232
TspMI CCCGGG 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 239
XmaI CCCGGG 1 cut(s) 119
XspI CTAG 1 cut(s) 134
ZraI GACGTC 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.