Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004305

Physical Location & Seq

Genomic Coordinates Forward (+)

2164815 .. 2178134

Gene Structure 13320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00388840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGCTTCTCCGCAACTCTCACCTCCGACCAAGTTGCCTCCCTCGCCCAACACCCCGCTGTTCTCCACGTCTTCGAAGACCGCCGCCGCTCCTCCACACCACCCGTTTGCCGCAGCTTCCCGGGCACGAGAAACTAGAAGGGGCCGTGCTTGTGCTCCGGTGGTTAAGGACGAGTTTACGTGCAGCAGGTCAAGGATTAAAGCAACCATTATTCCAAACTACGTCATTCCTCACCGTCCAAATTGCCCGGAGATGGTACCATTTCAACGTCATGGACAGGCAACTCACACACCAACAATCTTACCCACTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

104

Amino Acids

11.36

Weight (kDa)

11.18

Isoelectric Point (pI)

71.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34980
fragaria_vesca	FvH4_2g01410 FvH4_3g19440
malus_domestica	MD05G1120100.v1.1 MD10G1123500.v1.1
prunus_persica	Prupe.8G164000_v2.0.a1
pyrus_communis	pycom05g11390 pycom10g10580
rosa_chinensis	RchiOBHm_Chr6g0244021 RchiOBHm_Chr6g0252351 RchiOBHm_Chr6g0252361
rosa_laevigata	RLG00000015390 RLG00000029339
rosa_multiflora	Rmu_co8423929.1_g000001 Rmu_sc0001251.1_g000002 Rmu_sc0006415.1_g000012 Rmu_sc0006711.1_g000006 Rmu_sc0007419.1_g000002
rosa_roxburghii	Rroxscaffold_6G00388820 Rroxscaffold_6G00388840
rosa_rugosa	Rorug05G0223500 Rorug05G0506700 Rorug05G0515900
rosa_samantha	Rh1CG388200 Rh2AG211900 Rh3DG088300 Rh5BG286100 Rh5DG294800 Rh6AG021200 Rh6CG013400 Rh6DG014700
rosa_wichuraiana	Rw6G001740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	177
Acc65I	GGTACC	1 cut(s)	256
AccB1I	GGYRCC	1 cut(s)	256
AccBSI	CCGCTC	1 cut(s)	89
AciI	CCGC	6 cut(s)	11, 56, 81, 84, 87, 111
AfaI	GTAC	1 cut(s)	258
AfiI	CCNNNNNNNGG	1 cut(s)	253
AgsI	TTSAA	1 cut(s)	266
AjiI	CACGTC	1 cut(s)	69
AluBI	AGCT	1 cut(s)	116
AluI	AGCT	1 cut(s)	116
Alw21I	GWGCWC	1 cut(s)	157
Ama87I	CYCGRG	1 cut(s)	120
AoxI	GGCC	1 cut(s)	142
ApeKI	GCWGC	2 cut(s)	113, 183
Asp718I	GGTACC	1 cut(s)	256
AspS9I	GGNCC	1 cut(s)	142
AsuC2I	CCSGG	3 cut(s)	121, 122, 248
AsuHPI	GGTGA	2 cut(s)	12, 224
AsuII	TTCGAA	1 cut(s)	74
AvaI	CYCGRG	1 cut(s)	120
BaeGI	GKGCMC	1 cut(s)	127
BanI	GGYRCC	1 cut(s)	256
BauI	CACGAG	1 cut(s)	126
BbsI	GAAGAC	2 cut(s)	63, 83
Bbv12I	GWGCWC	1 cut(s)	157
BbvI	GCAGC	2 cut(s)	125, 195
BccI	CCATC	1 cut(s)	247
BceAI	ACGGC	1 cut(s)	129
BcgI	CGANNNNNNTGC	2 cut(s)	16, 50
BcnI	CCSGG	3 cut(s)	121, 122, 248
BfaI	CTAG	1 cut(s)	135
BfuAI	ACCTGC	1 cut(s)	177
BisI	GCNGC	5 cut(s)	84, 87, 111, 114, 184
BlsI	GCNGC	5 cut(s)	85, 88, 112, 115, 185
Bme1390I	CCNGG	3 cut(s)	121, 122, 248
BmeT110I	CYCGRG	1 cut(s)	120
BmgBI	CACGTC	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	2 cut(s)	143, 258
BmrFI	CCNGG	3 cut(s)	121, 122, 248
BpiI	GAAGAC	2 cut(s)	63, 83
Bpu14I	TTCGAA	1 cut(s)	74
BpuMI	CCSGG	3 cut(s)	121, 122, 248
BsaAI	YACGTR	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	120
BsaWI	WCCGGW	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
BseDI	CCNNGG	1 cut(s)	120
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseRI	GAGGAG	1 cut(s)	81
BseSI	GKGCMC	1 cut(s)	127
BseXI	GCAGC	2 cut(s)	125, 195
BsgI	GTGCAG	1 cut(s)	202
BshFI	GGCC	1 cut(s)	144
BshNI	GGYRCC	1 cut(s)	256
BsiHKAI	GWGCWC	1 cut(s)	157
BsiHKCI	CYCGRG	1 cut(s)	120
BsiSI	CCGG	3 cut(s)	121, 158, 248
BslI	CCNNNNNNNGG	1 cut(s)	253
BsnI	GGCC	1 cut(s)	144
BsoBI	CYCGRG	1 cut(s)	120
Bsp119I	TTCGAA	1 cut(s)	74
Bsp1286I	GDGCHC	2 cut(s)	127, 157
BspACI	CCGC	6 cut(s)	11, 56, 81, 84, 87, 111
BspANI	GGCC	1 cut(s)	144
BspLI	GGNNCC	2 cut(s)	143, 258
BspMI	ACCTGC	1 cut(s)	177
BspT104I	TTCGAA	1 cut(s)	74
BspT107I	GGYRCC	1 cut(s)	256
BsrBI	CCGCTC	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	120
BssSI	CACGAG	1 cut(s)	126
Bst2BI	CACGAG	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	236
BstBAI	YACGTR	1 cut(s)	180
BstBI	TTCGAA	1 cut(s)	74
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 122
BstSCI	CCNGG	3 cut(s)	119, 120, 246
BstSLI	GKGCMC	1 cut(s)	127
BstV1I	GCAGC	2 cut(s)	125, 195
BstV2I	GAAGAC	2 cut(s)	63, 83
BsuRI	GGCC	1 cut(s)	144
BtrI	CACGTC	1 cut(s)	69
BveI	ACCTGC	1 cut(s)	177
Cfr13I	GGNCC	1 cut(s)	142
Cfr9I	CCCGGG	1 cut(s)	120
Csp6I	GTAC	1 cut(s)	257
CviAII	CATG	1 cut(s)	272
CviJI	RGCY	3 cut(s)	5, 116, 144
CviKI_1	RGCY	3 cut(s)	5, 116, 144
CviQI	GTAC	1 cut(s)	257
Eco88I	CYCGRG	1 cut(s)	120
FaeI	CATG	1 cut(s)	275
FaiI	YATR	1 cut(s)	273
FatI	CATG	1 cut(s)	271
FauI	CCCGC	1 cut(s)	63
Fnu4HI	GCNGC	5 cut(s)	84, 87, 111, 114, 184
Fsp4HI	GCNGC	5 cut(s)	84, 87, 111, 114, 184
FspBI	CTAG	1 cut(s)	135
GluI	GCNGC	5 cut(s)	84, 87, 111, 114, 184
HaeIII	GGCC	1 cut(s)	144
HapII	CCGG	3 cut(s)	121, 158, 248
Hin1II	CATG	1 cut(s)	275
HpaII	CCGG	3 cut(s)	121, 158, 248
HphI	GGTGA	2 cut(s)	12, 224
Hpy166II	GTNNAC	1 cut(s)	177
Hpy188I	TCNGA	1 cut(s)	27
Hpy8I	GTNNAC	1 cut(s)	177
HpyAV	CCTTC	1 cut(s)	132
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4IV	ACGT	4 cut(s)	68, 179, 222, 268
HpyCH4V	TGCA	1 cut(s)	183
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 122
HpySE526I	ACGT	4 cut(s)	68, 179, 222, 268
Hsp92II	CATG	1 cut(s)	275
KpnI	GGTACC	1 cut(s)	260
LmnI	GCTCC	2 cut(s)	94, 160
LpnPI	CCDG	5 cut(s)	134, 171, 172, 261, 263
Lsp1109I	GCAGC	2 cut(s)	125, 195
MaeI	CTAG	1 cut(s)	135
MaeII	ACGT	4 cut(s)	68, 179, 222, 268
MbiI	CCGCTC	1 cut(s)	89
MboII	GAAGA	2 cut(s)	63, 88
MhlI	GDGCHC	2 cut(s)	127, 157
MluCI	AATT	1 cut(s)	241
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	5 cut(s)	33, 48, 52, 102, 240
MseI	TTAA	2 cut(s)	165, 198
MspA1I	CMGCKG	1 cut(s)	58
MspI	CCGG	3 cut(s)	121, 158, 248
MspR9I	CCNGG	3 cut(s)	121, 122, 248
MwoI	GCNNNNNNNGC	2 cut(s)	43, 122
NciI	CCSGG	3 cut(s)	121, 122, 248
NlaIII	CATG	1 cut(s)	275
NlaIV	GGNNCC	2 cut(s)	143, 258
NspV	TTCGAA	1 cut(s)	74
PkrI	GCNGC	5 cut(s)	85, 88, 112, 115, 185
Ppu21I	YACGTR	1 cut(s)	180
PspN4I	GGNNCC	2 cut(s)	143, 258
PspPI	GGNCC	1 cut(s)	142
RsaI	GTAC	1 cut(s)	258
RsaNI	GTAC	1 cut(s)	257
SaqAI	TTAA	2 cut(s)	165, 198
SatI	GCNGC	5 cut(s)	84, 87, 111, 114, 184
Sau96I	GGNCC	1 cut(s)	142
ScrFI	CCNGG	3 cut(s)	121, 122, 248
SduI	GDGCHC	2 cut(s)	127, 157
SetI	ASST	7 cut(s)	25, 71, 118, 182, 191, 225, 271
SfuI	TTCGAA	1 cut(s)	74
SmaI	CCCGGG	1 cut(s)	122
Sse9I	AATT	1 cut(s)	241
SsiI	CCGC	6 cut(s)	11, 56, 81, 84, 87, 111
SspMI	CTAG	1 cut(s)	135
StyD4I	CCNGG	3 cut(s)	119, 120, 246
TaaI	ACNGT	1 cut(s)	236
TaiI	ACGT	4 cut(s)	71, 182, 225, 271
TaqI	TCGA	1 cut(s)	74
TasI	AATT	1 cut(s)	241
TauI	GCSGC	3 cut(s)	86, 89, 113
Tru1I	TTAA	2 cut(s)	165, 198
Tru9I	TTAA	2 cut(s)	165, 198
TseI	GCWGC	2 cut(s)	113, 183
TspMI	CCCGGG	1 cut(s)	120
XmaI	CCCGGG	1 cut(s)	120
XspI	CTAG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.