Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006835.1

Orthogroup ID

OG0003910

Physical Location & Seq

Genomic Coordinates Reverse (-)

54273 .. 55391

Gene Structure 1119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

atgattaaccgccaactgaatttcaaaaccctccaacgaatacacaagccacgactaagccactctaaattccattccttgaaagacgaacaccacctgttcgatgaaattccccaaccagatgctgccgcagttaaccgctctatgctcaactatatgcacaggaacctttcagctacggccctcgaaatatttagtaaacaaattcaactgtgttcgtctcctcggaacattgatgaagttaccctcacccttgctgccaaggcttgccaaggggacccgaaacccggatgccaaatccacgggtttgcagtttcttctgggtttatttcctatgttgcagtttcgaattcgttgatgagtatgtacactaaagctgggaggtttgatagtgcaatgtgtatttttgatggtatgtgttatactgatatagtttcttggaatactattctttcggggtttcgaacgagtgagggggcgttgagttttgctctcaggatgcattcaaatgggataggtttggatccggtgacttattgtacagttcttgctttttgtgcggagtatgaaaattttctgtttgggttacaattgcattctctcatacttcagtctgggttggatcgtgaagtttttgttgggaatgcgcttataagtatgtattcaaggtggagacgtttgatagaagctaggaatgtgtttgatgaaatgcggattaaggatgtggtttcttggaatgcaatactatcaggttgctctcaagagggaaatcatgggcttgaagcagttttactcttcattgaaatggtgagagaagggatgaaacttgatcatgtctcatttactagcgcagtttcagcttgcgggcatgagaagaattcaaggcttgggagacagatacatggcttgacagtaaaatcaggatatgaaagtcatgtttcggttgggaacgtgttgatctcaacatattcaaagagtggtgtcagtgaagatgcgggattggtgtttcagctcatgaacaatcgcaatgtaatttcctggactacaatgatttctatggacgaagagaatgccatctctttattcaatgagatgagattggatggagtatccaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000960 GO:0000962 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010604 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903313 GO:1905637 GO:1905639

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

372

Amino Acids

41.5

Weight (kDa)

6.7

Isoelectric Point (pI)

41.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	240 - 288	1.8e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32430 AT4G32430
fragaria_vesca	FvH4_1g03430
malus_domestica	MD15G1174400.v1.1
prunus_persica	Prupe.5G003100_v2.0.a1 Prupe.7G240400_v2.0.a1 Prupe.7G241500_v2.0.a1 Prupe.7G241700_v2.0.a1 Prupe.8G249000_v2.0.a1
pyrus_communis	pycom15g15600
rosa_chinensis	RchiOBHm_Chr2g0088661 RchiOBHm_Chr5g0002171
rosa_laevigata	RLG00000015973 RLG00000015974 RLG00000031004
rosa_multiflora	Rmu_sc0006835.1_g000012 Rmu_sc0006835.1_g000013 Rmu_sc0013155.1_g000001 Rmu_sc0015442.1_g000012 Rmu_sc0015442.1_g000013 Rmu_sc0024326.1_g000001 Rmu_sc0041985.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152420
rosa_rugosa	Rorug01G0485700
rosa_samantha	Rh2AG041200 Rh2BG039900 Rh2CG040700 Rh2DG040300 Rh5AG016800 Rh5AG016900 Rh5CG018300 Rh5CG018400 Rh5CG018500
rosa_wichuraiana	Rw2G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	653
AccBSI	CCGCTC	1 cut(s)	141
AciI	CCGC	7 cut(s)	10, 129, 139, 560, 712, 864, 995
AclWI	GGATC	3 cut(s)	518, 531, 630
AcsI	RAATTY	7 cut(s)	19, 68, 108, 204, 349, 571, 877
AcuI	CTGAAG	1 cut(s)	593
AfaI	GTAC	2 cut(s)	368, 541
AfiI	CCNNNNNNNGG	1 cut(s)	287
AflIII	ACRYGT	1 cut(s)	951
AjnI	CCWGG	1 cut(s)	1037
AjuI	GAANNNNNNNTTGG	2 cut(s)	621, 653
AluBI	AGCT	5 cut(s)	176, 377, 689, 860, 1012
AluI	AGCT	5 cut(s)	176, 377, 689, 860, 1012
Alw26I	GTCTC	4 cut(s)	225, 667, 841, 886
AlwI	GGATC	3 cut(s)	518, 531, 630
AlwNI	CAGNNNCTG	1 cut(s)	125
AoxI	GGCC	1 cut(s)	180
ApeKI	GCWGC	2 cut(s)	125, 257
ApoI	RAATTY	7 cut(s)	19, 68, 108, 204, 349, 571, 877
Asp700I	GAANNNNTTC	1 cut(s)	573
AspLEI	GCGC	2 cut(s)	649, 851
AspS9I	GGNCC	2 cut(s)	181, 277
AsuC2I	CCSGG	1 cut(s)	288
AsuHPI	GGTGA	3 cut(s)	241, 541, 820
AsuII	TTCGAA	2 cut(s)	347, 463
AvaII	GGWCC	1 cut(s)	277
BamHI	GGATCC	1 cut(s)	523
BarI	GAAGNNNNNNTAC	2 cut(s)	774, 806
BbvI	GCAGC	2 cut(s)	112, 244
BccI	CCATC	3 cut(s)	404, 1082, 1097
BceAI	ACGGC	1 cut(s)	195
BcgI	CGANNNNNNTGC	2 cut(s)	1052, 1086
BciT130I	CCWGG	1 cut(s)	1039
BclI	TGATCA	1 cut(s)	829
BcnI	CCSGG	1 cut(s)	288
BcoDI	GTCTC	4 cut(s)	225, 667, 841, 886
BfaI	CTAG	2 cut(s)	690, 846
BisI	GCNGC	3 cut(s)	126, 129, 258
BlsI	GCNGC	3 cut(s)	127, 130, 259
Bme1390I	CCNGG	2 cut(s)	288, 1039
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	2 cut(s)	181, 277
BmiI	GGNNCC	4 cut(s)	167, 278, 279, 525
BmrFI	CCNGG	2 cut(s)	288, 1039
BmsI	GCATC	4 cut(s)	112, 281, 489, 982
BplI	GAGNNNNNCTC	2 cut(s)	475, 507
Bpu14I	TTCGAA	2 cut(s)	347, 463
BpuEI	CTTGAG	1 cut(s)	744
BpuMI	CCSGG	1 cut(s)	288
BsaJI	CCNNGG	4 cut(s)	224, 261, 271, 301
BsaWI	WCCGGW	1 cut(s)	526
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse3DI	GCAATG	2 cut(s)	402, 1033
BseBI	CCWGG	1 cut(s)	1039
BseDI	CCNNGG	4 cut(s)	224, 261, 271, 301
BseGI	GGATG	5 cut(s)	296, 504, 727, 825, 1108
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMI	GCAATG	2 cut(s)	402, 1033
BseMII	CTCAG	1 cut(s)	508
BseRI	GAGGAG	1 cut(s)	213
BseXI	GCAGC	2 cut(s)	112, 244
BseYI	CCCAGC	1 cut(s)	377
BshFI	GGCC	1 cut(s)	182
BsiSI	CCGG	2 cut(s)	288, 527
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmAI	GTCTC	4 cut(s)	225, 667, 841, 886
BsmBI	CGTCTC	2 cut(s)	225, 667
BsmFI	GGGAC	1 cut(s)	290
BsmI	GAATGC	5 cut(s)	502, 595, 649, 742, 1075
BsnI	GGCC	1 cut(s)	182
Bsp119I	TTCGAA	2 cut(s)	347, 463
Bsp1407I	TGTACA	2 cut(s)	366, 539
Bsp143I	GATC	4 cut(s)	523, 622, 829, 957
BspACI	CCGC	7 cut(s)	10, 129, 139, 560, 712, 864, 995
BspANI	GGCC	1 cut(s)	182
BspCNI	CTCAG	1 cut(s)	507
BspHI	TCATGA	1 cut(s)	1014
BspLI	GGNNCC	4 cut(s)	167, 278, 279, 525
BspPI	GGATC	3 cut(s)	518, 531, 630
BspT104I	TTCGAA	2 cut(s)	347, 463
BsrBI	CCGCTC	1 cut(s)	141
BsrDI	GCAATG	2 cut(s)	402, 1033
BsrGI	TGTACA	2 cut(s)	366, 539
BssECI	CCNNGG	4 cut(s)	224, 261, 271, 301
BssMI	GATC	4 cut(s)	523, 622, 829, 957
BssT1I	CCWWGG	2 cut(s)	261, 271
Bst2UI	CCWGG	1 cut(s)	1039
Bst4CI	ACNGT	3 cut(s)	213, 544, 913
Bst6I	CTCTTC	2 cut(s)	800, 1059
BstAUI	TGTACA	2 cut(s)	366, 539
BstBI	TTCGAA	2 cut(s)	347, 463
BstC8I	GCNNGC	3 cut(s)	268, 862, 866
BstDEI	CTNAG	2 cut(s)	56, 494
BstDSI	CCRYGG	1 cut(s)	301
BstF5I	GGATG	5 cut(s)	296, 504, 727, 825, 1108
BstHHI	GCGC	2 cut(s)	649, 851
BstKTI	GATC	4 cut(s)	526, 625, 832, 960
BstMAI	GTCTC	4 cut(s)	225, 667, 841, 886
BstMBI	GATC	4 cut(s)	523, 622, 829, 957
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 557, 857
BstNI	CCWGG	1 cut(s)	1039
BstSCI	CCNGG	2 cut(s)	286, 1037
BstV1I	GCAGC	2 cut(s)	112, 244
BstX2I	RGATCY	1 cut(s)	523
BstYI	RGATCY	1 cut(s)	523
BsuRI	GGCC	1 cut(s)	182
BtgI	CCRYGG	1 cut(s)	301
BtsCI	GGATG	5 cut(s)	296, 504, 727, 825, 1108
BtsIMutI	CAGTG	1 cut(s)	991
Cac8I	GCNNGC	3 cut(s)	268, 862, 866
CaiI	CAGNNNCTG	1 cut(s)	125
CciI	TCATGA	1 cut(s)	1014
CfoI	GCGC	2 cut(s)	649, 851
Cfr13I	GGNCC	2 cut(s)	181, 277
Csp6I	GTAC	2 cut(s)	367, 540
CviAII	CATG	6 cut(s)	773, 833, 869, 902, 935, 1015
CviQI	GTAC	2 cut(s)	367, 540
DdeI	CTNAG	2 cut(s)	56, 494
DpnI	GATC	4 cut(s)	525, 624, 831, 959
DpnII	GATC	4 cut(s)	523, 622, 829, 957
Eam1104I	CTCTTC	2 cut(s)	800, 1059
EarI	CTCTTC	2 cut(s)	800, 1059
Eco130I	CCWWGG	2 cut(s)	261, 271
Eco47I	GGWCC	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	593
EcoO109I	RGGNCCY	1 cut(s)	277
EcoRI	GAATTC	2 cut(s)	349, 877
EcoRII	CCWGG	1 cut(s)	1037
EcoT14I	CCWWGG	2 cut(s)	261, 271
EcoT22I	ATGCAT	1 cut(s)	504
ErhI	CCWWGG	2 cut(s)	261, 271
Esp3I	CGTCTC	2 cut(s)	225, 667
FaeI	CATG	6 cut(s)	776, 836, 872, 905, 938, 1018
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	6 cut(s)	772, 832, 868, 901, 934, 1014
FauI	CCCGC	2 cut(s)	857, 988
FbaI	TGATCA	1 cut(s)	829
Fnu4HI	GCNGC	3 cut(s)	126, 129, 258
FokI	GGATG	5 cut(s)	303, 511, 734, 832, 1115
Fsp4HI	GCNGC	3 cut(s)	126, 129, 258
FspBI	CTAG	2 cut(s)	690, 846
GlaI	GCGC	2 cut(s)	648, 850
GluI	GCNGC	3 cut(s)	126, 129, 258
GsaI	CCCAGC	1 cut(s)	381
HaeIII	GGCC	1 cut(s)	182
HapII	CCGG	2 cut(s)	288, 527
HhaI	GCGC	2 cut(s)	649, 851
Hin1II	CATG	6 cut(s)	776, 836, 872, 905, 938, 1018
Hin6I	GCGC	2 cut(s)	647, 849
HinP1I	GCGC	2 cut(s)	647, 849
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HpaI	GTTAAC	1 cut(s)	136
HpaII	CCGG	2 cut(s)	288, 527
HphI	GGTGA	3 cut(s)	241, 541, 820
Hpy166II	GTNNAC	3 cut(s)	136, 200, 369
Hpy188I	TCNGA	1 cut(s)	228
Hpy188III	TCNNGA	5 cut(s)	496, 626, 761, 921, 1015
Hpy8I	GTNNAC	3 cut(s)	136, 200, 369
HpyAV	CCTTC	1 cut(s)	809
HpyCH4III	ACNGT	3 cut(s)	213, 544, 913
HpyCH4IV	ACGT	2 cut(s)	676, 951
HpyCH4V	TGCA	7 cut(s)	160, 311, 341, 395, 502, 595, 740
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 557, 857
HpyF3I	CTNAG	2 cut(s)	56, 494
HpySE526I	ACGT	2 cut(s)	676, 951
Hsp92II	CATG	6 cut(s)	776, 836, 872, 905, 938, 1018
HspAI	GCGC	2 cut(s)	647, 849
KflI	GGGWCCC	1 cut(s)	277
Ksp22I	TGATCA	1 cut(s)	829
KspAI	GTTAAC	1 cut(s)	136
Kzo9I	GATC	4 cut(s)	523, 622, 829, 957
Lsp1109I	GCAGC	2 cut(s)	112, 244
LweI	GCATC	4 cut(s)	112, 281, 489, 982
MaeI	CTAG	2 cut(s)	690, 846
MaeII	ACGT	2 cut(s)	676, 951
MaeIII	GTNAC	3 cut(s)	241, 529, 585
MalI	GATC	4 cut(s)	525, 624, 831, 959
MbiI	CCGCTC	1 cut(s)	141
MboI	GATC	4 cut(s)	523, 622, 829, 957
MboII	GAAGA	5 cut(s)	309, 787, 886, 1001, 1076
MfeI	CAATTG	1 cut(s)	590
MflI	RGATCY	1 cut(s)	523
MluCI	AATT	9 cut(s)	19, 68, 108, 204, 349, 571, 590, 877, 1032
MmeI	TCCRAC	2 cut(s)	58, 600
MnlI	CCTC	7 cut(s)	41, 194, 234, 257, 375, 466, 757
Mph1103I	ATGCAT	1 cut(s)	504
MroXI	GAANNNNTTC	1 cut(s)	573
MseI	TTAA	3 cut(s)	6, 135, 717
MslI	CAYNNNNRTG	2 cut(s)	507, 803
MspI	CCGG	2 cut(s)	288, 527
MspR9I	CCNGG	2 cut(s)	288, 1039
MunI	CAATTG	1 cut(s)	590
Mva1269I	GAATGC	5 cut(s)	502, 595, 649, 742, 1075
MvaI	CCWGG	1 cut(s)	1039
MwoI	GCNNNNNNNGC	3 cut(s)	263, 557, 857
NciI	CCSGG	1 cut(s)	288
NdeII	GATC	4 cut(s)	523, 622, 829, 957
NlaIII	CATG	6 cut(s)	776, 836, 872, 905, 938, 1018
NlaIV	GGNNCC	4 cut(s)	167, 278, 279, 525
NmuCI	GTSAC	1 cut(s)	529
NsiI	ATGCAT	1 cut(s)	504
NspV	TTCGAA	2 cut(s)	347, 463
PagI	TCATGA	1 cut(s)	1014
PctI	GAATGC	5 cut(s)	502, 595, 649, 742, 1075
PdmI	GAANNNNTTC	1 cut(s)	573
PfoI	TCCNGGA	1 cut(s)	1037
PkrI	GCNGC	3 cut(s)	127, 130, 259
PpuMI	RGGWCCY	1 cut(s)	277
PsiI	TTATAA	1 cut(s)	653
Psp5II	RGGWCCY	1 cut(s)	277
Psp6I	CCWGG	1 cut(s)	1037
PspFI	CCCAGC	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	1037
PspN4I	GGNNCC	4 cut(s)	167, 278, 279, 525
PspPI	GGNCC	2 cut(s)	181, 277
PspPPI	RGGWCCY	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	523
RsaI	GTAC	2 cut(s)	368, 541
RsaNI	GTAC	2 cut(s)	367, 540
RseI	CAYNNNNRTG	2 cut(s)	507, 803
SaqAI	TTAA	3 cut(s)	6, 135, 717
SatI	GCNGC	3 cut(s)	126, 129, 258
Sau3AI	GATC	4 cut(s)	523, 622, 829, 957
Sau96I	GGNCC	2 cut(s)	181, 277
ScrFI	CCNGG	2 cut(s)	288, 1039
SfaNI	GCATC	4 cut(s)	112, 281, 489, 982
SfuI	TTCGAA	2 cut(s)	347, 463
SinI	GGWCC	1 cut(s)	277
SmiMI	CAYNNNNRTG	2 cut(s)	507, 803
SmlI	CTYRAG	1 cut(s)	759
SmoI	CTYRAG	1 cut(s)	759
Sse9I	AATT	9 cut(s)	19, 68, 108, 204, 349, 571, 590, 877, 1032
SsiI	CCGC	7 cut(s)	10, 129, 139, 560, 712, 864, 995
SspI	AATATT	1 cut(s)	192
SspMI	CTAG	2 cut(s)	690, 846
StyD4I	CCNGG	2 cut(s)	286, 1037
StyI	CCWWGG	2 cut(s)	261, 271
TaaI	ACNGT	3 cut(s)	213, 544, 913
TaiI	ACGT	2 cut(s)	679, 954
TaqI	TCGA	4 cut(s)	102, 186, 347, 463
TasI	AATT	9 cut(s)	19, 68, 108, 204, 349, 571, 590, 877, 1032
TatI	WGTACW	2 cut(s)	366, 539
TauI	GCSGC	1 cut(s)	131
Tru1I	TTAA	3 cut(s)	6, 135, 717
Tru9I	TTAA	3 cut(s)	6, 135, 717
TscAI	CASTG	1 cut(s)	991
TseFI	GTSAC	1 cut(s)	529
TseI	GCWGC	2 cut(s)	125, 257
Tsp45I	GTSAC	1 cut(s)	529
TspDTI	ATGAA	8 cut(s)	120, 252, 582, 720, 787, 836, 942, 1031
TspRI	CASTG	1 cut(s)	991
VpaK11BI	GGWCC	1 cut(s)	277
XapI	RAATTY	7 cut(s)	19, 68, 108, 204, 349, 571, 877
XmnI	GAANNNNTTC	1 cut(s)	573
XspI	CTAG	2 cut(s)	690, 846
Zsp2I	ATGCAT	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.