Rmu_sc0006867.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006867.1
OG0004624
Physical Location & Seq
Reverse (-)
1 .. 6030
6030 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1489 bp
atgactacccacagcactctcttcaacttccaccacactgcaccttcaaacccactctcctcctccaccaccactccacacctcaacctctcctgctccttcaaacccaaaccccccaaaccctcctccttctccttcgctcccacaccaatacccgcacgagacagagtcatagacttcggcaaacacaagggaaaaatgcttggcacactcccttccacctacctcaaatgggtctccaccaacctccgcgcccgcgacttcgagcactgggccaagctcgccgaccaggtcctaagcgacgccgtttaccgcgaccgcatcgagtgggagtccgccgagaatgcgctcagcggtaacagaagcaacgccggcggagtttcggagcttctggggatcagcgacaggttcgggtgggacaacgatgacaaagttggctggagtaaagtgaacttcgagcttttgggtacttcgaaaggtgggagaattccgaggaggaagagtgagactgaagttgcagaacagagtggtttggaggagagagagaagaagggtgagggtttaggggagaagaggagggaaaggagggagaggaggatgaggatgcagagagtggaacgtggggttgggaaggaggagaaggttgggggtagtttagggaatggagttggattagggaggactagcaaggagaatggtaatgaagataattggatggtggataattcgaaaaagtttcctggacgcgagtctttgttgaggaaagcttatagcagaagaacgctaatgacaaataataaagaaaatgacaccttaacatcaggtgacagttcatttggaaagcttcctgatcatctcctaatagagatcttcatccgggttcccgtctctgaatgggtacgggtatgctgtgtaagaaaacagtgggccaatctttttcgtggagaatgcttgtggcgagctgctctatctacgacatttcctttggctagcaaagctaaaagttggcctggacctatccctcgaggtttgagcaagaggagatttgctgctttatatgttagtgagcacatctttgctctagatggtgagattgatgagatagtggggcatacttatttgtttctaaaagagcagcttgagctttcatctatgcctccaccatctggtattttgcacggtaccataatagatcagtttattgcttgtggtaaatcaagagacatggctcacgagcttgcttcccagatatggttggctgttcttgacaatttagaggaaaccgaacacacttttcaaatacttaaacgtctcgcacaagagggggatgtttttcttccatacccgtactcaagatcaatcaaagtccaatggaaggtgtttgaaaagcttttcactgattttcgtgactgcctcaaccatgtggattactatgatgtcttggctagtgcaaagaacaagtttcagccaataccatctacttggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QSregVF_b

Protein Analysis

496

Amino Acids

56.26

Weight (kDa)

9.22

Isoelectric Point (pI)

38.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 280 - 320 5.3e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1023
Acc65I GGTACC 1 cut(s) 1181
AccB1I GGYRCC 1 cut(s) 1181
AccB7I CCANNNNNTGG 1 cut(s) 1166
AccII CGCG 4 cut(s) 252, 258, 315, 747
AciI CCGC 8 cut(s) 156, 250, 256, 313, 319, 336, 354, 375
AclWI GGATC 1 cut(s) 404
AcsI RAATTY 1 cut(s) 486
AcuI CTGAAG 1 cut(s) 531
AcyI GRCGYC 1 cut(s) 303
AfaI GTAC 4 cut(s) 469, 900, 1183, 1349
AfiI CCNNNNNNNGG 4 cut(s) 232, 1166, 1251, 1375
AgsI TTSAA 5 cut(s) 25, 48, 103, 1298, 1385
AjnI CCWGG 3 cut(s) 288, 739, 1009
AjuI GAANNNNNNNTTGG 2 cut(s) 609, 641
Alw21I GWGCWC 2 cut(s) 270, 1071
Alw26I GTCTC 6 cut(s) 156, 241, 500, 892, 1215, 1316
AlwI GGATC 1 cut(s) 404
Ama87I CYCGRG 1 cut(s) 1023
AoxI GGCC 3 cut(s) 273, 927, 1007
ApeKI GCWGC 3 cut(s) 962, 1049, 1135
ApoI RAATTY 1 cut(s) 486
ArsI GACNNNNNNTTYG 4 cut(s) 818, 850, 967, 999
Asp718I GGTACC 1 cut(s) 1181
AspLEI GCGC 2 cut(s) 254, 349
AspS9I GGNCC 4 cut(s) 273, 292, 927, 1013
AsuC2I CCSGG 1 cut(s) 878
AsuHPI GGTGA 3 cut(s) 566, 836, 1100
AsuII TTCGAA 2 cut(s) 473, 728
AsuNHI GCTAGC 1 cut(s) 989
AvaI CYCGRG 1 cut(s) 1023
AvaII GGWCC 2 cut(s) 292, 1013
BanI GGYRCC 1 cut(s) 1181
BauI CACGAG 2 cut(s) 159, 1232
Bbv12I GWGCWC 2 cut(s) 270, 1071
BbvI GCAGC 3 cut(s) 949, 1036, 1147
BccI CCATC 4 cut(s) 709, 1079, 1171, 1483
BceAI ACGGC 1 cut(s) 290
BciT130I CCWGG 3 cut(s) 290, 741, 1011
BclI TGATCA 1 cut(s) 850
BcnI CCSGG 1 cut(s) 878
BcoDI GTCTC 6 cut(s) 156, 241, 500, 892, 1215, 1316
BfaI CTAG 4 cut(s) 684, 990, 1082, 1446
BglII AGATCT 1 cut(s) 867
BisI GCNGC 3 cut(s) 963, 1050, 1136
BlpI GCTNAGC 1 cut(s) 350
BlsI GCNGC 3 cut(s) 964, 1051, 1137
Bme1390I CCNGG 4 cut(s) 290, 741, 878, 1011
Bme18I GGWCC 2 cut(s) 292, 1013
BmeT110I CYCGRG 1 cut(s) 1023
BmgT120I GGNCC 4 cut(s) 273, 292, 927, 1013
BmiI GGNNCC 2 cut(s) 882, 1183
BmrFI CCNGG 4 cut(s) 290, 741, 878, 1011
BmrI ACTGGG 1 cut(s) 280
BmsI GCATC 2 cut(s) 330, 594
BmtI GCTAGC 1 cut(s) 993
BmuI ACTGGG 1 cut(s) 280
BoxI GACNNNNGTC 1 cut(s) 748
BpmI CTGGAG 1 cut(s) 460
Bpu10I CCTNAGC 1 cut(s) 296
Bpu1102I GCTNAGC 1 cut(s) 350
Bpu14I TTCGAA 2 cut(s) 473, 728
BpuEI CTTGAG 2 cut(s) 1160, 1336
BpuMI CCSGG 1 cut(s) 878
BsaBI GATNNNNATC 1 cut(s) 872
BsaHI GRCGYC 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 241
BsaJI CCNNGG 1 cut(s) 491
BsaXI ACNNNNNCTCC 6 cut(s) 41, 58, 71, 88, 487, 517
Bsc4I CCNNNNNNNGG 4 cut(s) 232, 1166, 1251, 1375
Bse118I RCCGGY 1 cut(s) 371
Bse1I ACTGG 1 cut(s) 275
Bse8I GATNNNNATC 1 cut(s) 872
BseBI CCWGG 3 cut(s) 290, 741, 1011
BseDI CCNNGG 1 cut(s) 491
BseGI GGATG 5 cut(s) 603, 609, 720, 873, 1333
BseJI GATNNNNATC 1 cut(s) 872
BseLI CCNNNNNNNGG 4 cut(s) 232, 1166, 1251, 1375
BseMII CTCAG 1 cut(s) 364
BseNI ACTGG 1 cut(s) 275
BseRI GAGGAG 9 cut(s) 49, 52, 115, 508, 551, 589, 607, 650, 1054
BseXI GCAGC 3 cut(s) 949, 1036, 1147
BsgI GTGCAG 1 cut(s) 24
Bsh1236I CGCG 4 cut(s) 252, 258, 315, 747
Bsh1285I CGRYCG 1 cut(s) 319
BshFI GGCC 3 cut(s) 275, 929, 1009
BshNI GGYRCC 1 cut(s) 1181
BsiEI CGRYCG 1 cut(s) 319
BsiHKAI GWGCWC 2 cut(s) 270, 1071
BsiHKCI CYCGRG 1 cut(s) 1023
BsiSI CCGG 2 cut(s) 372, 877
BslFI GGGAC 1 cut(s) 431
BslI CCNNNNNNNGG 4 cut(s) 232, 1166, 1251, 1375
BsmAI GTCTC 6 cut(s) 156, 241, 500, 892, 1215, 1316
BsmBI CGTCTC 2 cut(s) 892, 1316
BsmFI GGGAC 1 cut(s) 431
BsmI GAATGC 2 cut(s) 349, 953
BsnI GGCC 3 cut(s) 275, 929, 1009
Bso31I GGTCTC 1 cut(s) 241
BsoBI CYCGRG 1 cut(s) 1023
Bsp119I TTCGAA 2 cut(s) 473, 728
Bsp1286I GDGCHC 2 cut(s) 270, 1071
Bsp143I GATC 5 cut(s) 396, 850, 867, 1192, 1355
Bsp1720I GCTNAGC 1 cut(s) 350
BspACI CCGC 8 cut(s) 156, 250, 256, 313, 319, 336, 354, 375
BspANI GGCC 3 cut(s) 275, 929, 1009
BspCNI CTCAG 1 cut(s) 363
BspFNI CGCG 4 cut(s) 252, 258, 315, 747
BspLI GGNNCC 2 cut(s) 882, 1183
BspOI GCTAGC 1 cut(s) 993
BspPI GGATC 1 cut(s) 404
BspT104I TTCGAA 2 cut(s) 473, 728
BspT107I GGYRCC 1 cut(s) 1181
BspTNI GGTCTC 1 cut(s) 241
BsrFI RCCGGY 1 cut(s) 371
BsrI ACTGG 1 cut(s) 275
BssAI RCCGGY 1 cut(s) 371
BssECI CCNNGG 1 cut(s) 491
BssMI GATC 5 cut(s) 396, 850, 867, 1192, 1355
BssNI GRCGYC 1 cut(s) 303
BssSI CACGAG 2 cut(s) 159, 1232
Bst2BI CACGAG 2 cut(s) 159, 1232
Bst2UI CCWGG 3 cut(s) 290, 741, 1011
Bst4CI ACNGT 3 cut(s) 830, 924, 1181
Bst6I CTCTTC 3 cut(s) 26, 494, 566
BstACI GRCGYC 1 cut(s) 303
BstBI TTCGAA 2 cut(s) 473, 728
BstC8I GCNNGC 6 cut(s) 256, 282, 373, 960, 991, 1239
BstDEI CTNAG 2 cut(s) 296, 350
BstF5I GGATG 5 cut(s) 603, 609, 720, 873, 1333
BstFNI CGCG 4 cut(s) 252, 258, 315, 747
BstHHI GCGC 2 cut(s) 254, 349
BstKTI GATC 5 cut(s) 399, 853, 870, 1195, 1358
BstMAI GTCTC 6 cut(s) 156, 241, 500, 892, 1215, 1316
BstMBI GATC 5 cut(s) 396, 850, 867, 1192, 1355
BstMCI CGRYCG 1 cut(s) 319
BstMWI GCNNNNNNNGC 5 cut(s) 281, 344, 372, 995, 1141
BstNI CCWGG 3 cut(s) 290, 741, 1011
BstPAI GACNNNNGTC 1 cut(s) 748
BstSCI CCNGG 4 cut(s) 288, 739, 876, 1009
BstUI CGCG 4 cut(s) 252, 258, 315, 747
BstV1I GCAGC 3 cut(s) 949, 1036, 1147
BstX2I RGATCY 1 cut(s) 867
BstXI CCANNNNNNTGG 1 cut(s) 1482
BstYI RGATCY 1 cut(s) 867
BsuRI GGCC 3 cut(s) 275, 929, 1009
BtsCI GGATG 5 cut(s) 603, 609, 720, 873, 1333
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 4 cut(s) 36, 268, 929, 1395
Cac8I GCNNGC 6 cut(s) 256, 282, 373, 960, 991, 1239
CfoI GCGC 2 cut(s) 254, 349
Cfr10I RCCGGY 1 cut(s) 371
Cfr13I GGNCC 4 cut(s) 273, 292, 927, 1013
CseI GACGC 2 cut(s) 311, 753
CsiI ACCWGGT 1 cut(s) 288
Csp6I GTAC 4 cut(s) 468, 899, 1182, 1348
CviAII CATG 2 cut(s) 1225, 1421
CviQI GTAC 4 cut(s) 468, 899, 1182, 1348
DdeI CTNAG 2 cut(s) 296, 350
DpnI GATC 5 cut(s) 398, 852, 869, 1194, 1357
DpnII GATC 5 cut(s) 396, 850, 867, 1192, 1355
Eam1104I CTCTTC 3 cut(s) 26, 494, 566
EarI CTCTTC 3 cut(s) 26, 494, 566
EciI GGCGGA 2 cut(s) 325, 390
Eco31I GGTCTC 1 cut(s) 241
Eco47I GGWCC 2 cut(s) 292, 1013
Eco57I CTGAAG 1 cut(s) 531
Eco88I CYCGRG 1 cut(s) 1023
EcoO109I RGGNCCY 1 cut(s) 292
EcoRI GAATTC 1 cut(s) 486
EcoRII CCWGG 3 cut(s) 288, 739, 1009
Esp3I CGTCTC 2 cut(s) 892, 1316
FaeI CATG 2 cut(s) 1228, 1424
FalI AAGNNNNNCTT 2 cut(s) 1122, 1154
FaqI GGGAC 1 cut(s) 431
FatI CATG 2 cut(s) 1224, 1420
FauI CCCGC 2 cut(s) 163, 263
FbaI TGATCA 1 cut(s) 850
Fnu4HI GCNGC 3 cut(s) 963, 1050, 1136
FokI GGATG 5 cut(s) 610, 616, 727, 860, 1340
Fsp4HI GCNGC 3 cut(s) 963, 1050, 1136
FspBI CTAG 4 cut(s) 684, 990, 1082, 1446
GlaI GCGC 2 cut(s) 253, 348
GluI GCNGC 3 cut(s) 963, 1050, 1136
GsuI CTGGAG 1 cut(s) 460
HaeIII GGCC 3 cut(s) 275, 929, 1009
HapII CCGG 2 cut(s) 372, 877
HgaI GACGC 2 cut(s) 311, 753
HhaI GCGC 2 cut(s) 254, 349
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 2 cut(s) 1228, 1424
Hin6I GCGC 2 cut(s) 252, 347
HinP1I GCGC 2 cut(s) 252, 347
HindIII AAGCTT 3 cut(s) 765, 842, 1388
HinfI GANTC 3 cut(s) 168, 332, 749
HpaII CCGG 2 cut(s) 372, 877
HphI GGTGA 3 cut(s) 566, 836, 1100
Hpy166II GTNNAC 2 cut(s) 310, 451
Hpy188I TCNGA 3 cut(s) 385, 492, 892
Hpy188III TCNNGA 7 cut(s) 848, 1082, 1218, 1232, 1265, 1353, 1406
Hpy8I GTNNAC 2 cut(s) 310, 451
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 9 cut(s) 54, 109, 139, 145, 225, 544, 625, 634, 1369
HpyCH4III ACNGT 3 cut(s) 830, 924, 1181
HpyCH4IV ACGT 2 cut(s) 619, 1309
HpyCH4V TGCA 5 cut(s) 41, 518, 607, 1177, 1451
HpyF10VI GCNNNNNNNGC 5 cut(s) 281, 344, 372, 995, 1141
HpyF3I CTNAG 2 cut(s) 296, 350
HpySE526I ACGT 2 cut(s) 619, 1309
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 2 cut(s) 1228, 1424
HspAI GCGC 2 cut(s) 252, 347
KpnI GGTACC 1 cut(s) 1185
KroI GCCGGC 1 cut(s) 371
KroNI GCCGGC 1 cut(s) 373
Ksp22I TGATCA 1 cut(s) 850
Kzo9I GATC 5 cut(s) 396, 850, 867, 1192, 1355
LmnI GCTCC 3 cut(s) 101, 145, 385
Lsp1109I GCAGC 3 cut(s) 949, 1036, 1147
LweI GCATC 2 cut(s) 330, 594
MabI ACCWGGT 1 cut(s) 288
MaeI CTAG 4 cut(s) 684, 990, 1082, 1446
MaeII ACGT 2 cut(s) 619, 1309
MaeIII GTNAC 3 cut(s) 356, 824, 1406
MalI GATC 5 cut(s) 398, 852, 869, 1194, 1357
MboI GATC 5 cut(s) 396, 850, 867, 1192, 1355
MboII GAAGA 8 cut(s) 13, 511, 559, 583, 716, 789, 862, 1328
MflI RGATCY 1 cut(s) 867
MhlI GDGCHC 2 cut(s) 270, 1071
MluCI AATT 4 cut(s) 486, 709, 724, 1270
MlyI GAGTC 3 cut(s) 177, 341, 758
MmeI TCCRAC 1 cut(s) 649
MreI CGCCGGCG 1 cut(s) 371
MroNI GCCGGC 1 cut(s) 371
MseI TTAA 2 cut(s) 815, 1305
MspA1I CMGCKG 1 cut(s) 354
MspI CCGG 2 cut(s) 372, 877
MspR9I CCNGG 4 cut(s) 290, 741, 878, 1011
Mva1269I GAATGC 2 cut(s) 349, 953
MvaI CCWGG 3 cut(s) 290, 741, 1011
MvnI CGCG 4 cut(s) 252, 258, 315, 747
MwoI GCNNNNNNNGC 5 cut(s) 281, 344, 372, 995, 1141
NaeI GCCGGC 1 cut(s) 373
NciI CCSGG 1 cut(s) 878
NdeII GATC 5 cut(s) 396, 850, 867, 1192, 1355
NgoMIV GCCGGC 1 cut(s) 371
NheI GCTAGC 1 cut(s) 989
NlaIII CATG 2 cut(s) 1228, 1424
NlaIV GGNNCC 2 cut(s) 882, 1183
NmeAIII GCCGAG 1 cut(s) 364
NmuCI GTSAC 2 cut(s) 824, 1406
NspV TTCGAA 2 cut(s) 473, 728
PaeR7I CTCGAG 1 cut(s) 1023
PctI GAATGC 2 cut(s) 349, 953
PdiI GCCGGC 1 cut(s) 373
PflFI GACNNNGTC 2 cut(s) 167, 290
PflMI CCANNNNNTGG 1 cut(s) 1166
PfoI TCCNGGA 1 cut(s) 739
PkrI GCNGC 3 cut(s) 964, 1051, 1137
PleI GAGTC 3 cut(s) 176, 340, 757
PpsI GAGTC 3 cut(s) 176, 340, 757
PpuMI RGGWCCY 1 cut(s) 292
PshAI GACNNNNGTC 1 cut(s) 748
Psp5II RGGWCCY 1 cut(s) 292
Psp6I CCWGG 3 cut(s) 288, 739, 1009
PspGI CCWGG 3 cut(s) 288, 739, 1009
PspN4I GGNNCC 2 cut(s) 882, 1183
PspPI GGNCC 4 cut(s) 273, 292, 927, 1013
PspPPI RGGWCCY 1 cut(s) 292
PspXI VCTCGAGB 1 cut(s) 1023
PsuI RGATCY 1 cut(s) 867
PsyI GACNNNGTC 2 cut(s) 167, 290
RsaI GTAC 4 cut(s) 469, 900, 1183, 1349
RsaNI GTAC 4 cut(s) 468, 899, 1182, 1348
SaqAI TTAA 2 cut(s) 815, 1305
SatI GCNGC 3 cut(s) 963, 1050, 1136
Sau3AI GATC 5 cut(s) 396, 850, 867, 1192, 1355
Sau96I GGNCC 4 cut(s) 273, 292, 927, 1013
SchI GAGTC 3 cut(s) 177, 341, 758
ScrFI CCNGG 4 cut(s) 290, 741, 878, 1011
SduI GDGCHC 2 cut(s) 270, 1071
SexAI ACCWGGT 1 cut(s) 288
SfaNI GCATC 2 cut(s) 330, 594
Sfr274I CTCGAG 1 cut(s) 1023
SfuI TTCGAA 2 cut(s) 473, 728
SgrAI CRCCGGYG 1 cut(s) 371
SinI GGWCC 2 cut(s) 292, 1013
SlaI CTCGAG 1 cut(s) 1023
SmlI CTYRAG 3 cut(s) 1023, 1139, 1351
SmoI CTYRAG 3 cut(s) 1023, 1139, 1351
Sse9I AATT 4 cut(s) 486, 709, 724, 1270
SsiI CCGC 8 cut(s) 156, 250, 256, 313, 319, 336, 354, 375
SspMI CTAG 4 cut(s) 684, 990, 1082, 1446
StyD4I CCNGG 4 cut(s) 288, 739, 876, 1009
TaaI ACNGT 3 cut(s) 830, 924, 1181
TaiI ACGT 2 cut(s) 622, 1312
TaqI TCGA 6 cut(s) 264, 324, 456, 473, 728, 1024
TasI AATT 4 cut(s) 486, 709, 724, 1270
Tru1I TTAA 2 cut(s) 815, 1305
Tru9I TTAA 2 cut(s) 815, 1305
TscAI CASTG 4 cut(s) 43, 275, 929, 1402
TseFI GTSAC 2 cut(s) 824, 1406
TseI GCWGC 3 cut(s) 962, 1049, 1135
Tsp45I GTSAC 2 cut(s) 824, 1406
TspDTI ATGAA 4 cut(s) 717, 822, 862, 1137
TspRI CASTG 4 cut(s) 43, 275, 929, 1402
Tth111I GACNNNGTC 2 cut(s) 167, 290
Van91I CCANNNNNTGG 1 cut(s) 1166
VpaK11BI GGWCC 2 cut(s) 292, 1013
XapI RAATTY 1 cut(s) 486
XbaI TCTAGA 1 cut(s) 1081
XhoI CTCGAG 1 cut(s) 1023
XspI CTAG 4 cut(s) 684, 990, 1082, 1446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.