Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007269.1

Orthogroup ID

OG0002640

Physical Location & Seq

Genomic Coordinates Reverse (-)

44788 .. 49109

Gene Structure 4322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

atgttatgggggcatcttggcaagggcggaaaggtggcttcccggtggcggatttgcgacttccggataccgccgcgtagcctgaacatagggctacacgatgcatgtctcggttgggccttgccatgtcttgtggatgtcccaaacaatggcagtgaagcacgggctccaccgaaacagagccgccagatttcattccctactgcgcttattttgccctttctggaactggatatcaagtactttgatcttggcctccctaatcgtgatgccaccagtgatagagtcacaattgaaagtgcagaagctactcttaagtatgccttatcattctgccttcatgttacctttgctagactacattacttctgctgtctggaactggatatcaagtactttgatcttggcctccctaatcgtgatgccaccagtgatagagtcacaattgaaagtgcagaagctactcttaagtatgccttatcattctgccttcatgttacctttgctagactacagtactgttggacgaggccaatatgcattgggaggcatgctttcggtgatcagtaccgagcaactgatgcaatcataaaaggacctgggaaacttaaattagtttttgtacctgatgggtccaatgagaagcaagaatatgaggttttcaactttactggtgctggaggggtagctctgtcaatgtataacactgatgagtctatccgatcctttgcggatgcatctatgaatactgcctaccagaaaaagtggccactttatcttagcactaaaaatactattctcaagaaatatgatggaaggacatcttctgagaaaagcctcatcgaaatatccctccccgacggatattatgttggccatgacaaggaagaagagtccatctttagtctgcaacagaaaatgtcaggtttgtcacagaaggccattttccaacagcatactttatttgagttcttagctgagatcaatgaggaagaaaatatgattgaaattgacatatccatgggctcaatcaagtgctcaaggtttgagattgaagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0016020 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

353

Amino Acids

39.87

Weight (kDa)

5.95

Isoelectric Point (pI)

51.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	178 - 272	8.9e-10	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04480 AT5G35870
fragaria_vesca	FvH4_6g40610 FvH4_6g40610 FvH4_6g40610 FvH4_6g40610 FvH4_6g40610
malus_domestica	MD09G1126800.v1.1 MD17G1117100.v1.1
prunus_persica	Prupe.3G197400_v2.0.a1 Prupe.3G197400_v2.0.a1 Prupe.4G242400_v2.0.a1
pyrus_communis	pycom03g13770 pycom09g05100 pycom17g10770
rosa_chinensis	RchiOBHm_Chr2g0155981
rosa_laevigata	RLG00000013745
rosa_multiflora	Rmu_sc0000260.1_g000027 Rmu_sc0002072.1_g000028 Rmu_sc0004623.1_g000009 Rmu_sc0007269.1_g000006
rosa_roxburghii	Rroxscaffold_1G00033680 Rroxscaffold_2G00093320 Rroxscaffold_7G00188500
rosa_rugosa	Rorug02G0451000 Rorug05G0580200
rosa_samantha	Rh1BG329200 Rh1CG342900 Rh1DG359500 Rh1DG360200 Rh2AG517600 Rh2BG528900 Rh2CG502300 Rh2DG538000 Rh6AG145600 Rh7AG259400 Rh7BG008800 Rh7CG276300
rosa_wichuraiana	Rw2G024070 Rw2G042620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	149
AccII	CGCG	1 cut(s)	76
AccIII	TCCGGA	1 cut(s)	63
AciI	CCGC	6 cut(s)	27, 49, 71, 74, 184, 731
AclWI	GGATC	1 cut(s)	717
AcoI	YGGCCR	2 cut(s)	767, 874
AfaI	GTAC	5 cut(s)	242, 395, 518, 569, 624
AfiI	CCNNNNNNNGG	3 cut(s)	48, 149, 883
AflII	CTTAAG	2 cut(s)	314, 467
AgsI	TTSAA	5 cut(s)	296, 449, 664, 1007, 1055
AjnI	CCWGG	1 cut(s)	598
AluBI	AGCT	5 cut(s)	308, 461, 689, 977, 1058
AluI	AGCT	5 cut(s)	308, 461, 689, 977, 1058
Alw21I	GWGCWC	1 cut(s)	1040
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	1 cut(s)	717
Aor13HI	TCCGGA	1 cut(s)	63
AoxI	GGCC	7 cut(s)	117, 253, 406, 530, 767, 874, 939
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	3 cut(s)	117, 596, 633
AsuC2I	CCSGG	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	572
AvaII	GGWCC	2 cut(s)	596, 633
BalI	TGGCCA	2 cut(s)	769, 876
BanII	GRGCYC	2 cut(s)	169, 1028
Bbv12I	GWGCWC	1 cut(s)	1040
BccI	CCATC	3 cut(s)	623, 806, 905
BciT130I	CCWGG	1 cut(s)	600
BciVI	GTATCC	1 cut(s)	60
BclI	TGATCA	1 cut(s)	562
BcnI	CCSGG	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	2 cut(s)	354, 507
BfmI	CTRYAG	1 cut(s)	512
BfrI	CTTAAG	2 cut(s)	314, 467
BfuI	GTATCC	1 cut(s)	60
BisI	GCNGC	2 cut(s)	74, 184
BlsI	GCNGC	2 cut(s)	75, 185
BmcAI	AGTACT	3 cut(s)	242, 395, 518
Bme1390I	CCNGG	2 cut(s)	43, 600
Bme18I	GGWCC	2 cut(s)	596, 633
BmgT120I	GGNCC	3 cut(s)	117, 596, 633
BmiI	GGNNCC	2 cut(s)	168, 634
BmrFI	CCNGG	2 cut(s)	43, 600
BmsI	GCATC	7 cut(s)	22, 91, 259, 412, 571, 724, 746
BpmI	CTGGAG	1 cut(s)	699
BpuEI	CTTGAG	2 cut(s)	785, 1024
BpuMI	CCSGG	1 cut(s)	43
BsaJI	CCNNGG	2 cut(s)	599, 1020
BsaWI	WCCGGW	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 149, 883
Bse1I	ACTGG	5 cut(s)	234, 276, 387, 429, 676
BseAI	TCCGGA	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	600
BseDI	CCNNGG	2 cut(s)	599, 1020
BseGI	GGATG	2 cut(s)	142, 739
BseLI	CCNNNNNNNGG	3 cut(s)	48, 149, 883
BseMII	CTCAG	2 cut(s)	819, 969
BseNI	ACTGG	5 cut(s)	234, 276, 387, 429, 676
BsgI	GTGCAG	2 cut(s)	321, 474
Bsh1236I	CGCG	1 cut(s)	76
BshFI	GGCC	7 cut(s)	119, 255, 408, 532, 769, 876, 941
BsiHKAI	GWGCWC	1 cut(s)	1040
BsiSI	CCGG	2 cut(s)	43, 64
BslFI	GGGAC	1 cut(s)	125
BslI	CCNNNNNNNGG	3 cut(s)	48, 149, 883
BsmAI	GTCTC	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	125
BsnI	GGCC	7 cut(s)	119, 255, 408, 532, 769, 876, 941
Bsp1286I	GDGCHC	3 cut(s)	169, 1028, 1040
Bsp13I	TCCGGA	1 cut(s)	63
Bsp143I	GATC	5 cut(s)	247, 400, 562, 722, 981
Bsp19I	CCATGG	1 cut(s)	1020
BspACI	CCGC	6 cut(s)	27, 49, 71, 74, 184, 731
BspANI	GGCC	7 cut(s)	119, 255, 408, 532, 769, 876, 941
BspCNI	CTCAG	2 cut(s)	820, 970
BspEI	TCCGGA	1 cut(s)	63
BspFNI	CGCG	1 cut(s)	76
BspLI	GGNNCC	2 cut(s)	168, 634
BspPI	GGATC	1 cut(s)	717
BspTI	CTTAAG	2 cut(s)	314, 467
BsrI	ACTGG	5 cut(s)	234, 276, 387, 429, 676
BssECI	CCNNGG	2 cut(s)	599, 1020
BssMI	GATC	5 cut(s)	247, 400, 562, 722, 981
BssT1I	CCWWGG	1 cut(s)	1020
Bst2UI	CCWGG	1 cut(s)	600
Bst4CI	ACNGT	2 cut(s)	516, 521
Bst6I	CTCTTC	1 cut(s)	885
BstAFI	CTTAAG	2 cut(s)	314, 467
BstAPI	GCANNNNNTGC	1 cut(s)	581
BstC8I	GCNNGC	1 cut(s)	552
BstDEI	CTNAG	4 cut(s)	779, 828, 973, 978
BstDSI	CCRYGG	1 cut(s)	1020
BstF5I	GGATG	2 cut(s)	142, 739
BstFNI	CGCG	1 cut(s)	76
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	5 cut(s)	250, 403, 565, 725, 984
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	5 cut(s)	247, 400, 562, 722, 981
BstMWI	GCNNNNNNNGC	2 cut(s)	214, 581
BstNI	CCWGG	1 cut(s)	600
BstNSI	RCATGY	2 cut(s)	108, 554
BstSCI	CCNGG	2 cut(s)	41, 598
BstSFI	CTRYAG	1 cut(s)	512
BstUI	CGCG	1 cut(s)	76
BsuI	GTATCC	1 cut(s)	60
BsuRI	GGCC	7 cut(s)	119, 255, 408, 532, 769, 876, 941
BtgI	CCRYGG	1 cut(s)	1020
BtsCI	GGATG	2 cut(s)	142, 739
BtsI	GCAGTG	1 cut(s)	160
BtsIMutI	CAGTG	4 cut(s)	160, 283, 436, 705
Cac8I	GCNNGC	1 cut(s)	552
CfoI	GCGC	1 cut(s)	208
Cfr13I	GGNCC	3 cut(s)	117, 596, 633
Csp6I	GTAC	5 cut(s)	241, 394, 517, 568, 623
CviAII	CATG	7 cut(s)	105, 126, 341, 494, 551, 878, 1021
CviQI	GTAC	5 cut(s)	241, 394, 517, 568, 623
DdeI	CTNAG	4 cut(s)	779, 828, 973, 978
DpnI	GATC	5 cut(s)	249, 402, 564, 724, 983
DpnII	GATC	5 cut(s)	247, 400, 562, 722, 981
EaeI	YGGCCR	2 cut(s)	767, 874
Eam1104I	CTCTTC	1 cut(s)	885
EarI	CTCTTC	1 cut(s)	885
EciI	GGCGGA	2 cut(s)	42, 64
Eco130I	CCWWGG	1 cut(s)	1020
Eco24I	GRGCYC	2 cut(s)	169, 1028
Eco32I	GATATC	2 cut(s)	235, 388
Eco47I	GGWCC	2 cut(s)	596, 633
EcoO109I	RGGNCCY	1 cut(s)	596
EcoRII	CCWGG	1 cut(s)	598
EcoRV	GATATC	2 cut(s)	235, 388
EcoT14I	CCWWGG	1 cut(s)	1020
EcoT22I	ATGCAT	3 cut(s)	106, 542, 739
EcoT38I	GRGCYC	2 cut(s)	169, 1028
ErhI	CCWWGG	1 cut(s)	1020
FaeI	CATG	7 cut(s)	108, 129, 344, 497, 554, 881, 1024
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	7 cut(s)	104, 125, 340, 493, 550, 877, 1020
FbaI	TGATCA	1 cut(s)	562
Fnu4HI	GCNGC	2 cut(s)	74, 184
FokI	GGATG	2 cut(s)	149, 746
FriOI	GRGCYC	2 cut(s)	169, 1028
Fsp4HI	GCNGC	2 cut(s)	74, 184
FspBI	CTAG	2 cut(s)	354, 507
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	2 cut(s)	74, 184
GsuI	CTGGAG	1 cut(s)	699
HaeIII	GGCC	7 cut(s)	119, 255, 408, 532, 769, 876, 941
HapII	CCGG	2 cut(s)	43, 64
HhaI	GCGC	1 cut(s)	208
Hin1II	CATG	7 cut(s)	108, 129, 344, 497, 554, 881, 1024
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HindIII	AAGCTT	1 cut(s)	1056
HinfI	GANTC	4 cut(s)	285, 438, 713, 893
HpaII	CCGG	2 cut(s)	43, 64
HphI	GGTGA	1 cut(s)	572
Hpy188I	TCNGA	2 cut(s)	722, 829
Hpy188III	TCNNGA	6 cut(s)	64, 224, 266, 377, 419, 802
Hpy99I	CGWCG	1 cut(s)	863
HpyAV	CCTTC	4 cut(s)	347, 500, 810, 931
HpyCH4III	ACNGT	2 cut(s)	516, 521
HpyCH4V	TGCA	7 cut(s)	104, 302, 455, 540, 584, 737, 910
HpyF10VI	GCNNNNNNNGC	2 cut(s)	214, 581
HpyF3I	CTNAG	4 cut(s)	779, 828, 973, 978
Hsp92II	CATG	7 cut(s)	108, 129, 344, 497, 554, 881, 1024
HspAI	GCGC	1 cut(s)	206
Kpn2I	TCCGGA	1 cut(s)	63
Ksp22I	TGATCA	1 cut(s)	562
Kzo9I	GATC	5 cut(s)	247, 400, 562, 722, 981
LmnI	GCTCC	1 cut(s)	172
LweI	GCATC	7 cut(s)	22, 91, 259, 412, 571, 724, 746
MaeI	CTAG	2 cut(s)	354, 507
MaeIII	GTNAC	5 cut(s)	286, 343, 439, 496, 930
MalI	GATC	5 cut(s)	249, 402, 564, 724, 983
MboI	GATC	5 cut(s)	247, 400, 562, 722, 981
MboII	GAAGA	4 cut(s)	816, 899, 902, 1004
MfeI	CAATTG	2 cut(s)	291, 444
MhlI	GDGCHC	3 cut(s)	169, 1028, 1040
MlsI	TGGCCA	2 cut(s)	769, 876
MluCI	AATT	4 cut(s)	291, 444, 611, 1008
MluNI	TGGCCA	2 cut(s)	769, 876
MlyI	GAGTC	4 cut(s)	294, 447, 722, 902
MmeI	TCCRAC	2 cut(s)	503, 973
MnlI	CCTC	9 cut(s)	266, 419, 522, 540, 649, 674, 848, 863, 982
Mox20I	TGGCCA	2 cut(s)	769, 876
Mph1103I	ATGCAT	3 cut(s)	106, 542, 739
MroI	TCCGGA	1 cut(s)	63
MscI	TGGCCA	2 cut(s)	769, 876
MseI	TTAA	3 cut(s)	315, 468, 609
MslI	CAYNNNNRTG	1 cut(s)	1019
Msp20I	TGGCCA	2 cut(s)	769, 876
MspCI	CTTAAG	2 cut(s)	314, 467
MspI	CCGG	2 cut(s)	43, 64
MspR9I	CCNGG	2 cut(s)	43, 600
MunI	CAATTG	2 cut(s)	291, 444
MvaI	CCWGG	1 cut(s)	600
MvnI	CGCG	1 cut(s)	76
MwoI	GCNNNNNNNGC	2 cut(s)	214, 581
NciI	CCSGG	1 cut(s)	43
NcoI	CCATGG	1 cut(s)	1020
NdeII	GATC	5 cut(s)	247, 400, 562, 722, 981
NlaIII	CATG	7 cut(s)	108, 129, 344, 497, 554, 881, 1024
NlaIV	GGNNCC	2 cut(s)	168, 634
NmuCI	GTSAC	3 cut(s)	286, 439, 930
NsiI	ATGCAT	3 cut(s)	106, 542, 739
NspI	RCATGY	2 cut(s)	108, 554
PaeI	GCATGC	1 cut(s)	554
PflMI	CCANNNNNTGG	1 cut(s)	149
PkrI	GCNGC	2 cut(s)	75, 185
PleI	GAGTC	4 cut(s)	293, 446, 721, 901
PpsI	GAGTC	4 cut(s)	293, 446, 721, 901
PpuMI	RGGWCCY	1 cut(s)	596
Psp5II	RGGWCCY	1 cut(s)	596
Psp6I	CCWGG	1 cut(s)	598
PspGI	CCWGG	1 cut(s)	598
PspN4I	GGNNCC	2 cut(s)	168, 634
PspPI	GGNCC	3 cut(s)	117, 596, 633
PspPPI	RGGWCCY	1 cut(s)	596
RsaI	GTAC	5 cut(s)	242, 395, 518, 569, 624
RsaNI	GTAC	5 cut(s)	241, 394, 517, 568, 623
RseI	CAYNNNNRTG	1 cut(s)	1019
SaqAI	TTAA	3 cut(s)	315, 468, 609
SatI	GCNGC	2 cut(s)	74, 184
Sau3AI	GATC	5 cut(s)	247, 400, 562, 722, 981
Sau96I	GGNCC	3 cut(s)	117, 596, 633
ScaI	AGTACT	3 cut(s)	242, 395, 518
SchI	GAGTC	4 cut(s)	294, 447, 722, 902
ScrFI	CCNGG	2 cut(s)	43, 600
SduI	GDGCHC	3 cut(s)	169, 1028, 1040
SfaNI	GCATC	7 cut(s)	22, 91, 259, 412, 571, 724, 746
SfcI	CTRYAG	1 cut(s)	512
SinI	GGWCC	2 cut(s)	596, 633
SmiMI	CAYNNNNRTG	1 cut(s)	1019
SmlI	CTYRAG	4 cut(s)	314, 467, 800, 1039
SmoI	CTYRAG	4 cut(s)	314, 467, 800, 1039
SphI	GCATGC	1 cut(s)	554
Sse9I	AATT	4 cut(s)	291, 444, 611, 1008
SsiI	CCGC	6 cut(s)	27, 49, 71, 74, 184, 731
SspMI	CTAG	2 cut(s)	354, 507
StyD4I	CCNGG	2 cut(s)	41, 598
StyI	CCWWGG	1 cut(s)	1020
TaaI	ACNGT	2 cut(s)	516, 521
TaqI	TCGA	1 cut(s)	843
TasI	AATT	4 cut(s)	291, 444, 611, 1008
TatI	WGTACW	3 cut(s)	240, 393, 516
TauI	GCSGC	2 cut(s)	76, 186
Tru1I	TTAA	3 cut(s)	315, 468, 609
Tru9I	TTAA	3 cut(s)	315, 468, 609
TscAI	CASTG	4 cut(s)	160, 283, 436, 712
TseFI	GTSAC	3 cut(s)	286, 439, 930
Tsp45I	GTSAC	3 cut(s)	286, 439, 930
TspDTI	ATGAA	4 cut(s)	183, 329, 482, 758
TspGWI	ACGGA	1 cut(s)	876
TspRI	CASTG	4 cut(s)	160, 283, 436, 712
Van91I	CCANNNNNTGG	1 cut(s)	149
Vha464I	CTTAAG	2 cut(s)	314, 467
VpaK11BI	GGWCC	2 cut(s)	596, 633
XceI	RCATGY	2 cut(s)	108, 554
XspI	CTAG	2 cut(s)	354, 507
ZrmI	AGTACT	3 cut(s)	242, 395, 518
Zsp2I	ATGCAT	3 cut(s)	106, 542, 739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.