Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000024.1

Orthogroup ID

OG0005918

Physical Location & Seq

Genomic Coordinates Forward (+)

46963 .. 48646

Gene Structure 1684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atgggtaaggtagtggagacgaagaagaagaagaagaaaggacgcccctctcttttagatctccaaaaacggaatatcagagagcaacaacatcacctccaccgcacctccaacaattccaattccacttctgcccctcgttccaaccctatttacacccctactgcccctcccaccaccgccgccgccgccaaccacaaccagcctccgctccgtcgatccacccgccgcaaccccaaccccgacgacgacgacgacgaggatgaagacgacgactccgacggaaacggcggcgcttcggacgggaagcgccgcgagaagaaactcaagctggtactcaaattgccgaaatcgtccgcgaattcggcgtcggtgaattccggcgggtcggagaatgacgacgacgacgacaacgccgcgtcggagagcggcaaaaagcgtaagatcaatgctataggggatggatctgggctcgctcacccgccaaagggcgacaagtcgattcctgctacaaacccctcctcaagcacccaccaaggtggggcaaagttggattctggaccctctactcctttacccaatacaaagctgctacttttcgttcttgagaggcttcaaaagaaggacacctatggagtgttttctgaacctgtggacccggaagagcttccagactaccatgaagtaatagacaaccctatggattttgggacagtgaagaagaaacttactagtggagcgtatgccagcttggagcagtttgaggtaagctcacacatatttgagctcctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0002576 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006810 GO:0006887 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016192 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032940 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045055 GO:0046903 GO:0051179 GO:0051234 GO:0051276 GO:0070013 GO:0070775 GO:0070776 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain

Protein Analysis

264

Amino Acids

28.64

Weight (kDa)

6.72

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	199 - 255	6.9e-15	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005918)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g09360 FvH4_7g26330
malus_domestica	MD01G1172400.v1.1 MD04G1178300.v1.1 MD07G1238700.v1.1
prunus_persica	Prupe.2G267500_v2.0.a1 Prupe.6G298300_v2.0.a1
pyrus_communis	pycom01g18390 pycom07g21470
rosa_chinensis	RchiOBHm_Chr1g0372791 RchiOBHm_Chr3g0459751
rosa_laevigata	RLG00000025060 RLG00000026872
rosa_multiflora	Rmu_co8360863.1_g000001 Rmu_sc0000240.1_g000036 Rmu_ssc0000024.1_g000009
rosa_roxburghii	Rroxscaffold_6G00420000
rosa_rugosa	Rorug01G0374300 Rorug03G0038100
rosa_samantha	Rh1AG383100 Rh1BG346800 Rh1CG360100 Rh1DG377700 Rh3AG096600 Rh3BG099300 Rh3CG101200 Rh3DG100600
rosa_wichuraiana	Rw1G033730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	211, 429
AccII	CGCG	3 cut(s)	315, 359, 419
AclWI	GGATC	2 cut(s)	213, 472
AcsI	RAATTY	2 cut(s)	361, 376
AcyI	GRCGYC	2 cut(s)	43, 368
AfaI	GTAC	1 cut(s)	336
AfiI	CCNNNNNNNGG	3 cut(s)	487, 488, 541
AgsI	TTSAA	1 cut(s)	617
AhlI	ACTAGT	1 cut(s)	731
AleI	CACNNNNGTG	1 cut(s)	537
AluBI	AGCT	6 cut(s)	331, 589, 667, 750, 771, 787
AluI	AGCT	6 cut(s)	331, 589, 667, 750, 771, 787
Alw21I	GWGCWC	1 cut(s)	789
Alw26I	GTCTC	1 cut(s)	11
AlwI	GGATC	2 cut(s)	213, 472
ApeKI	GCWGC	1 cut(s)	589
ApoI	RAATTY	2 cut(s)	361, 376
ArsI	GACNNNNNNTTYG	2 cut(s)	353, 385
Asp700I	GAANNNNTTC	1 cut(s)	666
AspLEI	GCGC	2 cut(s)	296, 312
AspS9I	GGNCC	2 cut(s)	560, 655
AsuC2I	CCSGG	1 cut(s)	659
AsuHPI	GGTGA	3 cut(s)	86, 385, 470
AvaII	GGWCC	2 cut(s)	560, 655
BanII	GRGCYC	2 cut(s)	474, 789
BbsI	GAAGAC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	789
BbvI	GCAGC	1 cut(s)	576
BccI	CCATC	1 cut(s)	455
BceAI	ACGGC	1 cut(s)	304
BcnI	CCSGG	1 cut(s)	659
BcoDI	GTCTC	1 cut(s)	11
BcuI	ACTAGT	1 cut(s)	731
BfaI	CTAG	1 cut(s)	732
BfmI	CTRYAG	1 cut(s)	453
BfoI	RGCGCY	2 cut(s)	297, 313
BglII	AGATCT	1 cut(s)	58
BisI	GCNGC	9 cut(s)	183, 186, 189, 229, 292, 313, 417, 430, 590
BlsI	GCNGC	9 cut(s)	184, 187, 190, 230, 293, 314, 418, 431, 591
Bme1390I	CCNGG	1 cut(s)	659
Bme18I	GGWCC	2 cut(s)	560, 655
BmgT120I	GGNCC	2 cut(s)	560, 655
BmiI	GGNNCC	2 cut(s)	562, 657
BmrFI	CCNGG	1 cut(s)	659
BpiI	GAAGAC	1 cut(s)	273
BplI	GAGNNNNNCTC	2 cut(s)	755, 787
BpuEI	CTTGAG	3 cut(s)	311, 508, 626
BpuMI	CCSGG	1 cut(s)	659
BsaHI	GRCGYC	2 cut(s)	43, 368
BsaJI	CCNNGG	1 cut(s)	535
BsaXI	ACNNNNNCTCC	8 cut(s)	81, 92, 111, 122, 154, 184, 260, 290
Bsc4I	CCNNNNNNNGG	3 cut(s)	487, 488, 541
BseDI	CCNNGG	1 cut(s)	535
BseGI	GGATG	2 cut(s)	268, 466
BseLI	CCNNNNNNNGG	3 cut(s)	487, 488, 541
BseRI	GAGGAG	1 cut(s)	511
BseXI	GCAGC	1 cut(s)	576
Bsh1236I	CGCG	3 cut(s)	315, 359, 419
BsiHKAI	GWGCWC	1 cut(s)	789
BsiSI	CCGG	2 cut(s)	381, 659
BslFI	GGGAC	1 cut(s)	724
BslI	CCNNNNNNNGG	3 cut(s)	487, 488, 541
BsmAI	GTCTC	1 cut(s)	11
BsmBI	CGTCTC	1 cut(s)	11
BsmFI	GGGAC	1 cut(s)	724
Bsp1286I	GDGCHC	2 cut(s)	474, 789
Bsp143I	GATC	4 cut(s)	58, 218, 444, 464
BspFNI	CGCG	3 cut(s)	315, 359, 419
BspLI	GGNNCC	2 cut(s)	562, 657
BspPI	GGATC	2 cut(s)	213, 472
BspQI	GCTCTTC	1 cut(s)	657
BsrBI	CCGCTC	2 cut(s)	211, 429
BssECI	CCNNGG	1 cut(s)	535
BssMI	GATC	4 cut(s)	58, 218, 444, 464
BssNI	GRCGYC	2 cut(s)	43, 368
BssT1I	CCWWGG	1 cut(s)	535
Bst4CI	ACNGT	1 cut(s)	715
Bst6I	CTCTTC	1 cut(s)	657
BstACI	GRCGYC	2 cut(s)	43, 368
BstC8I	GCNNGC	2 cut(s)	474, 748
BstF5I	GGATG	2 cut(s)	268, 466
BstFNI	CGCG	3 cut(s)	315, 359, 419
BstH2I	RGCGCY	2 cut(s)	297, 313
BstHHI	GCGC	2 cut(s)	296, 312
BstKTI	GATC	4 cut(s)	61, 221, 447, 467
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	4 cut(s)	58, 218, 444, 464
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 365
BstSCI	CCNGG	1 cut(s)	657
BstSFI	CTRYAG	1 cut(s)	453
BstUI	CGCG	3 cut(s)	315, 359, 419
BstV1I	GCAGC	1 cut(s)	576
BstV2I	GAAGAC	1 cut(s)	273
BstX2I	RGATCY	2 cut(s)	58, 464
BstXI	CCANNNNNNTGG	1 cut(s)	539
BstYI	RGATCY	2 cut(s)	58, 464
BtsCI	GGATG	2 cut(s)	268, 466
BtsIMutI	CAGTG	1 cut(s)	720
Cac8I	GCNNGC	2 cut(s)	474, 748
CfoI	GCGC	2 cut(s)	296, 312
Cfr13I	GGNCC	2 cut(s)	560, 655
CseI	GACGC	3 cut(s)	51, 357, 408
Csp6I	GTAC	1 cut(s)	335
CviAII	CATG	1 cut(s)	680
CviJI	RGCY	9 cut(s)	205, 331, 472, 589, 613, 667, 750, 771, 787
CviKI_1	RGCY	9 cut(s)	205, 331, 472, 589, 613, 667, 750, 771, 787
CviQI	GTAC	1 cut(s)	335
DpnI	GATC	4 cut(s)	60, 220, 446, 466
DpnII	GATC	4 cut(s)	58, 218, 444, 464
Eam1104I	CTCTTC	1 cut(s)	657
EarI	CTCTTC	1 cut(s)	657
Ecl136II	GAGCTC	1 cut(s)	787
Eco130I	CCWWGG	1 cut(s)	535
Eco24I	GRGCYC	2 cut(s)	474, 789
Eco47I	GGWCC	2 cut(s)	560, 655
Eco53kI	GAGCTC	1 cut(s)	787
EcoICRI	GAGCTC	1 cut(s)	787
EcoRI	GAATTC	2 cut(s)	361, 376
EcoT14I	CCWWGG	1 cut(s)	535
EcoT38I	GRGCYC	2 cut(s)	474, 789
ErhI	CCWWGG	1 cut(s)	535
Esp3I	CGTCTC	1 cut(s)	11
FaeI	CATG	1 cut(s)	683
FaiI	YATR	6 cut(s)	455, 633, 681, 701, 744, 779
FaqI	GGGAC	1 cut(s)	724
FatI	CATG	1 cut(s)	679
FauI	CCCGC	3 cut(s)	233, 377, 489
Fnu4HI	GCNGC	9 cut(s)	183, 186, 189, 229, 292, 313, 417, 430, 590
FokI	GGATG	2 cut(s)	275, 473
FriOI	GRGCYC	2 cut(s)	474, 789
Fsp4HI	GCNGC	9 cut(s)	183, 186, 189, 229, 292, 313, 417, 430, 590
FspBI	CTAG	1 cut(s)	732
GlaI	GCGC	2 cut(s)	295, 311
GluI	GCNGC	9 cut(s)	183, 186, 189, 229, 292, 313, 417, 430, 590
HaeII	RGCGCY	2 cut(s)	297, 313
HapII	CCGG	2 cut(s)	381, 659
HgaI	GACGC	3 cut(s)	51, 357, 408
HhaI	GCGC	2 cut(s)	296, 312
Hin1I	GRCGYC	2 cut(s)	43, 368
Hin1II	CATG	1 cut(s)	683
Hin6I	GCGC	2 cut(s)	294, 310
HinP1I	GCGC	2 cut(s)	294, 310
HinfI	GANTC	3 cut(s)	275, 502, 554
HpaII	CCGG	2 cut(s)	381, 659
HphI	GGTGA	3 cut(s)	86, 385, 470
Hpy166II	GTNNAC	1 cut(s)	655
Hpy188I	TCNGA	6 cut(s)	80, 280, 301, 391, 424, 646
Hpy188III	TCNNGA	3 cut(s)	558, 605, 671
Hpy8I	GTNNAC	1 cut(s)	655
HpyAV	CCTTC	1 cut(s)	616
HpyCH4III	ACNGT	1 cut(s)	715
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 365
Hsp92I	GRCGYC	2 cut(s)	43, 368
Hsp92II	CATG	1 cut(s)	683
HspAI	GCGC	2 cut(s)	294, 310
Kzo9I	GATC	4 cut(s)	58, 218, 444, 464
LguI	GCTCTTC	1 cut(s)	657
LmnI	GCTCC	4 cut(s)	216, 737, 754, 792
Lsp1109I	GCAGC	1 cut(s)	576
MaeI	CTAG	1 cut(s)	732
MalI	GATC	4 cut(s)	60, 220, 446, 466
MbiI	CCGCTC	2 cut(s)	211, 429
MboI	GATC	4 cut(s)	58, 218, 444, 464
MflI	RGATCY	2 cut(s)	58, 464
MhlI	GDGCHC	2 cut(s)	474, 789
MluCI	AATT	5 cut(s)	115, 121, 341, 361, 376
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	6 cut(s)	135, 168, 303, 369, 402, 531
MroXI	GAANNNNTTC	1 cut(s)	666
MseI	TTAA	1 cut(s)	793
MslI	CAYNNNNRTG	1 cut(s)	537
MspI	CCGG	2 cut(s)	381, 659
MspR9I	CCNGG	1 cut(s)	659
MvnI	CGCG	3 cut(s)	315, 359, 419
MwoI	GCNNNNNNNGC	2 cut(s)	188, 365
NciI	CCSGG	1 cut(s)	659
NdeII	GATC	4 cut(s)	58, 218, 444, 464
NlaIII	CATG	1 cut(s)	683
NlaIV	GGNNCC	2 cut(s)	562, 657
OliI	CACNNNNGTG	1 cut(s)	537
PciSI	GCTCTTC	1 cut(s)	657
PcsI	WCGNNNNNNNCGW	4 cut(s)	252, 255, 276, 405
PdmI	GAANNNNTTC	1 cut(s)	666
PfeI	GAWTC	2 cut(s)	502, 554
PkrI	GCNGC	9 cut(s)	184, 187, 190, 230, 293, 314, 418, 431, 591
PleI	GAGTC	1 cut(s)	269
PpsI	GAGTC	1 cut(s)	269
Psp124BI	GAGCTC	1 cut(s)	789
PspN4I	GGNNCC	2 cut(s)	562, 657
PspPI	GGNCC	2 cut(s)	560, 655
PsuI	RGATCY	2 cut(s)	58, 464
RsaI	GTAC	1 cut(s)	336
RsaNI	GTAC	1 cut(s)	335
RseI	CAYNNNNRTG	1 cut(s)	537
SacI	GAGCTC	1 cut(s)	789
SapI	GCTCTTC	1 cut(s)	657
SaqAI	TTAA	1 cut(s)	793
SatI	GCNGC	9 cut(s)	183, 186, 189, 229, 292, 313, 417, 430, 590
Sau3AI	GATC	4 cut(s)	58, 218, 444, 464
Sau96I	GGNCC	2 cut(s)	560, 655
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	659
SduI	GDGCHC	2 cut(s)	474, 789
SfcI	CTRYAG	1 cut(s)	453
SinI	GGWCC	2 cut(s)	560, 655
SmiMI	CAYNNNNRTG	1 cut(s)	537
SmlI	CTYRAG	3 cut(s)	326, 523, 605
SmoI	CTYRAG	3 cut(s)	326, 523, 605
SpeI	ACTAGT	1 cut(s)	731
Sse9I	AATT	5 cut(s)	115, 121, 341, 361, 376
SspMI	CTAG	1 cut(s)	732
SstI	GAGCTC	1 cut(s)	789
StyD4I	CCNGG	1 cut(s)	657
StyI	CCWWGG	1 cut(s)	535
TaaI	ACNGT	1 cut(s)	715
TaqI	TCGA	2 cut(s)	217, 500
TasI	AATT	5 cut(s)	115, 121, 341, 361, 376
TauI	GCSGC	8 cut(s)	185, 188, 191, 231, 294, 315, 419, 432
TfiI	GAWTC	2 cut(s)	502, 554
Tru1I	TTAA	1 cut(s)	793
Tru9I	TTAA	1 cut(s)	793
TscAI	CASTG	1 cut(s)	720
TseI	GCWGC	1 cut(s)	589
TspDTI	ATGAA	2 cut(s)	279, 696
TspGWI	ACGGA	3 cut(s)	85, 203, 297
TspRI	CASTG	1 cut(s)	720
VpaK11BI	GGWCC	2 cut(s)	560, 655
XapI	RAATTY	2 cut(s)	361, 376
XmnI	GAANNNNTTC	1 cut(s)	666
XspI	CTAG	1 cut(s)	732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.