Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000250.1

Orthogroup ID

OG0003498

Physical Location & Seq

Genomic Coordinates Reverse (-)

60041 .. 60343

Gene Structure 303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atgtcgggtcggggcaagggcctgggcaaaggcggagcaaaacgacaccgtaaggtcctccgcgacaacatccaaggcatcaccaagcccgccatccgccgcctcgcccgcagaggcggcgtcaagtgcatcagcggcctcatctacgaggagacacgcggcgtcctcaagatcttcctcgagaacgtcatccgcgacgccgtcacctacaccgagcacgcccgccgcaagaccgtcaccgccatggacgtcgtctacgccctcaagcgccagggccgaaccctctacggcttcgggggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000786 GO:0000788 GO:0000790 GO:0002376 GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006335 GO:0006336 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031497 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034622 GO:0034723 GO:0034724 GO:0034728 GO:0042393 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044815 GO:0045087 GO:0045595 GO:0045596 GO:0045637 GO:0045638 GO:0045652 GO:0045653 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050829 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051259 GO:0051262 GO:0051276 GO:0051290 GO:0051291 GO:0051704 GO:0051707 GO:0060255 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0080090 GO:0097159 GO:0098542 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1903706 GO:1903707 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05034 ko05203 ko05322 map05034 map05203 map05322

Pfam Domains

Protein Families

CENP-T_C

Protein Analysis

100

Amino Acids

11.11

Weight (kDa)

11.17

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CENP-T_C	PF15511	54 - 93	7.3e-08	Centromere kinetochore component CENP-T histone fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07660
fragaria_vesca	FvH4_3g34560 FvH4_3g35181 FvH4_3g35183 FvH4_3g35220 FvH4_3g35491 FvH4_3g35491 FvH4_3g35491 FvH4_3g35491 FvH4_6g14140 FvH4_7g20750 FvH4_7g20750 FvH4_7g20750 FvH4_7g20750 FvH4_7g20780
malus_domestica	MD01G1124600.v1.1 MD11G1117800.v1.1
prunus_persica	Prupe.2G232000_v2.0.a1 Prupe.2G232200_v2.0.a1 Prupe.5G134000_v2.0.a1 Prupe.6G081300_v2.0.a1 Prupe.6G251900_v2.0.a1 Prupe.7G028400_v2.0.a1
rosa_laevigata	RLG00000027349 RLG00000027452 RLG00000035544 RLG00000035615 RLG00000035618 RLG00000035660 RLG00000035661 RLG00000035663
rosa_multiflora	Rmu_sc0005638.1_g000004 Rmu_ssc0000250.1_g000014 Rmu_ssc0000309.1_g000042 Rmu_ssc0000309.1_g000043

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	252
AccI	GTMKAC	1 cut(s)	255
AccII	CGCG	3 cut(s)	63, 159, 195
AcyI	GRCGYC	4 cut(s)	120, 162, 198, 249
AjnI	CCWGG	2 cut(s)	21, 270
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	1 cut(s)	146
Ama87I	CYCGRG	1 cut(s)	179
AoxI	GGCC	3 cut(s)	19, 136, 274
AspLEI	GCGC	1 cut(s)	270
AspS9I	GGNCC	3 cut(s)	19, 55, 274
AsuHPI	GGTGA	3 cut(s)	73, 196, 229
AvaI	CYCGRG	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	55
Bbv12I	GWGCWC	1 cut(s)	219
BccI	CCATC	1 cut(s)	101
BceAI	ACGGC	1 cut(s)	185
BciT130I	CCWGG	2 cut(s)	23, 272
BcoDI	GTCTC	1 cut(s)	146
BfoI	RGCGCY	1 cut(s)	271
BglII	AGATCT	1 cut(s)	171
BisI	GCNGC	5 cut(s)	100, 118, 136, 160, 226
BlsI	GCNGC	5 cut(s)	101, 119, 137, 161, 227
Bme1390I	CCNGG	2 cut(s)	23, 272
Bme18I	GGWCC	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	179
BmgT120I	GGNCC	3 cut(s)	19, 55, 274
BmrFI	CCNGG	2 cut(s)	23, 272
BmsI	GCATC	2 cut(s)	87, 138
BpuEI	CTTGAG	2 cut(s)	152, 248
BsaHI	GRCGYC	4 cut(s)	120, 162, 198, 249
BsaJI	CCNNGG	4 cut(s)	22, 73, 243, 271
BseBI	CCWGG	2 cut(s)	23, 272
BseDI	CCNNGG	4 cut(s)	22, 73, 243, 271
BseGI	GGATG	3 cut(s)	69, 93, 189
BseRI	GAGGAG	1 cut(s)	164
Bsh1236I	CGCG	3 cut(s)	63, 159, 195
BshFI	GGCC	3 cut(s)	21, 138, 276
BsiHKAI	GWGCWC	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	146
BsnI	GGCC	3 cut(s)	21, 138, 276
BsoBI	CYCGRG	1 cut(s)	179
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	1 cut(s)	171
Bsp19I	CCATGG	1 cut(s)	243
BspANI	GGCC	3 cut(s)	21, 138, 276
BspFNI	CGCG	3 cut(s)	63, 159, 195
BssECI	CCNNGG	4 cut(s)	22, 73, 243, 271
BssMI	GATC	1 cut(s)	171
BssNI	GRCGYC	4 cut(s)	120, 162, 198, 249
BssT1I	CCWWGG	2 cut(s)	73, 243
Bst2UI	CCWGG	2 cut(s)	23, 272
Bst4CI	ACNGT	2 cut(s)	50, 235
BstACI	GRCGYC	4 cut(s)	120, 162, 198, 249
BstC8I	GCNNGC	4 cut(s)	90, 109, 219, 223
BstDSI	CCRYGG	1 cut(s)	243
BstF5I	GGATG	3 cut(s)	69, 93, 189
BstFNI	CGCG	3 cut(s)	63, 159, 195
BstH2I	RGCGCY	1 cut(s)	271
BstHHI	GCGC	1 cut(s)	270
BstKTI	GATC	1 cut(s)	174
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	1 cut(s)	171
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 117, 126, 135
BstNI	CCWGG	2 cut(s)	23, 272
BstSCI	CCNGG	2 cut(s)	21, 270
BstUI	CGCG	3 cut(s)	63, 159, 195
BstX2I	RGATCY	1 cut(s)	171
BstYI	RGATCY	1 cut(s)	171
BsuRI	GGCC	3 cut(s)	21, 138, 276
BtgI	CCRYGG	1 cut(s)	243
BtsCI	GGATG	3 cut(s)	69, 93, 189
Cac8I	GCNNGC	4 cut(s)	90, 109, 219, 223
CfoI	GCGC	1 cut(s)	270
Cfr13I	GGNCC	3 cut(s)	19, 55, 274
CseI	GACGC	3 cut(s)	109, 151, 206
CviAII	CATG	1 cut(s)	244
CviJI	RGCY	5 cut(s)	21, 88, 138, 276, 291
CviKI_1	RGCY	5 cut(s)	21, 88, 138, 276, 291
DpnI	GATC	1 cut(s)	173
DpnII	GATC	1 cut(s)	171
EciI	GGCGGA	2 cut(s)	48, 86
Eco130I	CCWWGG	2 cut(s)	73, 243
Eco47I	GGWCC	1 cut(s)	55
Eco88I	CYCGRG	1 cut(s)	179
EcoO109I	RGGNCCY	2 cut(s)	19, 55
EcoRII	CCWGG	2 cut(s)	21, 270
EcoT14I	CCWWGG	2 cut(s)	73, 243
ErhI	CCWWGG	2 cut(s)	73, 243
FaeI	CATG	1 cut(s)	247
FaiI	YATR	1 cut(s)	245
FatI	CATG	1 cut(s)	243
FauI	CCCGC	3 cut(s)	97, 116, 230
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	5 cut(s)	100, 118, 136, 160, 226
FokI	GGATG	3 cut(s)	56, 80, 176
Fsp4HI	GCNGC	5 cut(s)	100, 118, 136, 160, 226
GlaI	GCGC	1 cut(s)	269
GluI	GCNGC	5 cut(s)	100, 118, 136, 160, 226
HaeII	RGCGCY	1 cut(s)	271
HaeIII	GGCC	3 cut(s)	21, 138, 276
HgaI	GACGC	3 cut(s)	109, 151, 206
HhaI	GCGC	1 cut(s)	270
Hin1I	GRCGYC	4 cut(s)	120, 162, 198, 249
Hin1II	CATG	1 cut(s)	247
Hin6I	GCGC	1 cut(s)	268
HinP1I	GCGC	1 cut(s)	268
HphI	GGTGA	3 cut(s)	73, 196, 229
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188III	TCNNGA	2 cut(s)	169, 181
Hpy8I	GTNNAC	1 cut(s)	256
Hpy99I	CGWCG	2 cut(s)	200, 254
HpyCH4III	ACNGT	2 cut(s)	50, 235
HpyCH4IV	ACGT	2 cut(s)	186, 249
HpyCH4V	TGCA	1 cut(s)	129
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 117, 126, 135
HpySE526I	ACGT	2 cut(s)	186, 249
Hsp92I	GRCGYC	4 cut(s)	120, 162, 198, 249
Hsp92II	CATG	1 cut(s)	247
HspAI	GCGC	1 cut(s)	268
Kzo9I	GATC	1 cut(s)	171
LmnI	GCTCC	1 cut(s)	35
LpnPI	CCDG	4 cut(s)	8, 35, 257, 284
LweI	GCATC	2 cut(s)	87, 138
MaeII	ACGT	2 cut(s)	186, 249
MaeIII	GTNAC	2 cut(s)	202, 235
MalI	GATC	1 cut(s)	173
MboI	GATC	1 cut(s)	171
MboII	GAAGA	1 cut(s)	166
MflI	RGATCY	1 cut(s)	171
MhlI	GDGCHC	1 cut(s)	219
MnlI	CCTC	9 cut(s)	68, 107, 113, 142, 149, 176, 188, 272, 293
MseI	TTAA	1 cut(s)	301
MslI	CAYNNNNRTG	1 cut(s)	242
MspA1I	CMGCKG	1 cut(s)	135
MspR9I	CCNGG	2 cut(s)	23, 272
MvaI	CCWGG	2 cut(s)	23, 272
MvnI	CGCG	3 cut(s)	63, 159, 195
MwoI	GCNNNNNNNGC	4 cut(s)	108, 117, 126, 135
NcoI	CCATGG	1 cut(s)	243
NdeII	GATC	1 cut(s)	171
NlaIII	CATG	1 cut(s)	247
NmuCI	GTSAC	2 cut(s)	202, 235
PaeR7I	CTCGAG	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PflFI	GACNNNGTC	2 cut(s)	200, 251
PkrI	GCNGC	5 cut(s)	101, 119, 137, 161, 227
PpuMI	RGGWCCY	1 cut(s)	55
Psp5II	RGGWCCY	1 cut(s)	55
Psp6I	CCWGG	2 cut(s)	21, 270
PspGI	CCWGG	2 cut(s)	21, 270
PspPI	GGNCC	3 cut(s)	19, 55, 274
PspPPI	RGGWCCY	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	171
PsyI	GACNNNGTC	2 cut(s)	200, 251
RseI	CAYNNNNRTG	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	301
SatI	GCNGC	5 cut(s)	100, 118, 136, 160, 226
Sau3AI	GATC	1 cut(s)	171
Sau96I	GGNCC	3 cut(s)	19, 55, 274
ScrFI	CCNGG	2 cut(s)	23, 272
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	4 cut(s)	57, 189, 209, 252
SfaNI	GCATC	2 cut(s)	87, 138
Sfr274I	CTCGAG	1 cut(s)	179
SinI	GGWCC	1 cut(s)	55
SlaI	CTCGAG	1 cut(s)	179
SmiMI	CAYNNNNRTG	1 cut(s)	242
SmlI	CTYRAG	3 cut(s)	167, 179, 263
SmoI	CTYRAG	3 cut(s)	167, 179, 263
StyD4I	CCNGG	2 cut(s)	21, 270
StyI	CCWWGG	2 cut(s)	73, 243
TaaI	ACNGT	2 cut(s)	50, 235
TaiI	ACGT	2 cut(s)	189, 252
TaqI	TCGA	1 cut(s)	180
TauI	GCSGC	5 cut(s)	102, 120, 138, 162, 228
Tru1I	TTAA	1 cut(s)	301
Tru9I	TTAA	1 cut(s)	301
TseFI	GTSAC	2 cut(s)	202, 235
Tsp45I	GTSAC	2 cut(s)	202, 235
Tth111I	GACNNNGTC	2 cut(s)	200, 251
VpaK11BI	GGWCC	1 cut(s)	55
XhoI	CTCGAG	1 cut(s)	179
XmiI	GTMKAC	1 cut(s)	255
ZraI	GACGTC	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.