Rmu_ssc0000295.1_g000022

TPL-binding domain in jasmonate signalling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000295.1
OG0005902
Physical Location & Seq
Forward (+)
94558 .. 95443
886 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 495 bp
atggctcctcgtggttcagctactgctacagctggaatgcgcagccgtcatatcggtggaggtggcaactccagctccggaggcatgggcagtagcggcggtggctctagtgccggaaacaacatactcaggttctacaccgacgacgttcctagcttgaagatctcccccaccgtcatgctcgtcatgagcctctgcttcatcgacttcatcactgccctccacatggatgaaggtgtgagatctgttggcccttttggggtgttggtgaagaataggaattcttcgggggtcgagggatgggctattgatgccgaggaggaaagtccgaggaggaaagttgggccggagactattcgggtttgtaatagtttggacaaaggcattgtggaagggggcggaatggttccgaatagggagagactggagcatggtaggcagaatgaggatggtatgattggtacaaattatttggatgtggttaaaggtgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003824 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005700 GO:0006323 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006996 GO:0007063 GO:0007276 GO:0007283 GO:0008150 GO:0008270 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010629 GO:0010639 GO:0010948 GO:0016043 GO:0016462 GO:0016581 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0030261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031491 GO:0031974 GO:0031981 GO:0032501 GO:0032504 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0034728 GO:0035327 GO:0042623 GO:0042766 GO:0043044 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044703 GO:0044877 GO:0045786 GO:0045875 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048232 GO:0048519 GO:0048523 GO:0048609 GO:0050789 GO:0050794 GO:0051098 GO:0051101 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051312 GO:0051704 GO:0051726 GO:0051983 GO:0051985 GO:0060255 GO:0060341 GO:0065007 GO:0065009 GO:0070013 GO:0070603 GO:0070615 GO:0071103 GO:0071824 GO:0071840 GO:0071922 GO:0071923 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:1901363 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:1903828 GO:1904949 GO:1905634 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas PHD

Protein Analysis

164

Amino Acids

17.17

Weight (kDa)

6.29

Isoelectric Point (pI)

54.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec61_beta PF03911 39 - 76 9.2e-12 Sec61beta family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 41
AccIII TCCGGA 1 cut(s) 77
AciI CCGC 3 cut(s) 96, 99, 399
AcsI RAATTY 1 cut(s) 280
AfaI GTAC 1 cut(s) 463
AfiI CCNNNNNNNGG 2 cut(s) 226, 259
AgsI TTSAA 1 cut(s) 160
AluBI AGCT 4 cut(s) 20, 32, 75, 156
AluI AGCT 4 cut(s) 20, 32, 75, 156
Alw26I GTCTC 2 cut(s) 344, 415
AlwNI CAGNNNCTG 1 cut(s) 23
Aor13HI TCCGGA 1 cut(s) 77
AoxI GGCC 2 cut(s) 250, 344
ApeKI GCWGC 1 cut(s) 42
ApoI RAATTY 1 cut(s) 280
AspLEI GCGC 1 cut(s) 42
AspS9I GGNCC 2 cut(s) 251, 344
AsuHPI GGTGA 1 cut(s) 280
BauI CACGAG 1 cut(s) 9
BbvI GCAGC 1 cut(s) 54
BccI CCATC 2 cut(s) 294, 443
BceAI ACGGC 1 cut(s) 30
BcoDI GTCTC 2 cut(s) 344, 415
BfaI CTAG 2 cut(s) 108, 153
BfmI CTRYAG 1 cut(s) 27
BglII AGATCT 2 cut(s) 162, 242
BisI GCNGC 2 cut(s) 43, 97
BlsI GCNGC 2 cut(s) 44, 98
BmgT120I GGNCC 2 cut(s) 251, 344
BmiI GGNNCC 2 cut(s) 6, 408
BmsI GCATC 1 cut(s) 301
BpmI CTGGAG 2 cut(s) 55, 446
BsaJI CCNNGG 2 cut(s) 315, 329
BsaWI WCCGGW 1 cut(s) 77
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 259
Bse1I ACTGG 1 cut(s) 429
BseAI TCCGGA 1 cut(s) 77
BseDI CCNNGG 2 cut(s) 315, 329
BseGI GGATG 4 cut(s) 235, 305, 454, 481
BseLI CCNNNNNNNGG 2 cut(s) 226, 259
BseMII CTCAG 1 cut(s) 142
BseNI ACTGG 1 cut(s) 429
BseRI GAGGAG 2 cut(s) 332, 346
BseXI GCAGC 1 cut(s) 54
BshFI GGCC 2 cut(s) 252, 346
BsiSI CCGG 3 cut(s) 78, 114, 347
BslI CCNNNNNNNGG 2 cut(s) 226, 259
BsmAI GTCTC 2 cut(s) 344, 415
BsmI GAATGC 1 cut(s) 42
BsnI GGCC 2 cut(s) 252, 346
Bsp13I TCCGGA 1 cut(s) 77
Bsp143I GATC 2 cut(s) 162, 242
BspACI CCGC 3 cut(s) 96, 99, 399
BspANI GGCC 2 cut(s) 252, 346
BspCNI CTCAG 1 cut(s) 141
BspEI TCCGGA 1 cut(s) 77
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 2 cut(s) 6, 408
BsrI ACTGG 1 cut(s) 429
BssECI CCNNGG 2 cut(s) 315, 329
BssMI GATC 2 cut(s) 162, 242
BssSI CACGAG 1 cut(s) 9
Bst2BI CACGAG 1 cut(s) 9
Bst4CI ACNGT 1 cut(s) 175
BstDEI CTNAG 1 cut(s) 128
BstF5I GGATG 4 cut(s) 235, 305, 454, 481
BstHHI GCGC 1 cut(s) 42
BstKTI GATC 2 cut(s) 165, 245
BstMAI GTCTC 2 cut(s) 344, 415
BstMBI GATC 2 cut(s) 162, 242
BstMWI GCNNNNNNNGC 6 cut(s) 72, 81, 96, 102, 311, 436
BstSFI CTRYAG 1 cut(s) 27
BstV1I GCAGC 1 cut(s) 54
BstX2I RGATCY 2 cut(s) 162, 242
BstYI RGATCY 2 cut(s) 162, 242
BsuRI GGCC 2 cut(s) 252, 346
BtsCI GGATG 4 cut(s) 235, 305, 454, 481
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 1 cut(s) 213
CaiI CAGNNNCTG 1 cut(s) 23
CciI TCATGA 1 cut(s) 186
CfoI GCGC 1 cut(s) 42
Cfr13I GGNCC 2 cut(s) 251, 344
Csp6I GTAC 1 cut(s) 462
CviAII CATG 5 cut(s) 85, 178, 187, 226, 431
CviQI GTAC 1 cut(s) 462
DdeI CTNAG 1 cut(s) 128
DpnI GATC 2 cut(s) 164, 244
DpnII GATC 2 cut(s) 162, 242
EciI GGCGGA 1 cut(s) 414
EcoRI GAATTC 1 cut(s) 280
FaeI CATG 5 cut(s) 88, 181, 190, 229, 434
FaiI YATR 8 cut(s) 51, 86, 125, 179, 188, 227, 432, 455
FatI CATG 5 cut(s) 84, 177, 186, 225, 430
Fnu4HI GCNGC 2 cut(s) 43, 97
FokI GGATG 4 cut(s) 242, 312, 461, 488
Fsp4HI GCNGC 2 cut(s) 43, 97
FspBI CTAG 2 cut(s) 108, 153
FspI TGCGCA 1 cut(s) 41
GlaI GCGC 1 cut(s) 41
GluI GCNGC 2 cut(s) 43, 97
GsuI CTGGAG 2 cut(s) 55, 446
HaeIII GGCC 2 cut(s) 252, 346
HapII CCGG 3 cut(s) 78, 114, 347
HhaI GCGC 1 cut(s) 42
Hin1II CATG 5 cut(s) 88, 181, 190, 229, 434
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HpaII CCGG 3 cut(s) 78, 114, 347
HphI GGTGA 1 cut(s) 280
Hpy188I TCNGA 2 cut(s) 330, 411
Hpy188III TCNNGA 2 cut(s) 78, 187
Hpy99I CGWCG 2 cut(s) 146, 149
HpyAV CCTTC 2 cut(s) 227, 386
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4IV ACGT 1 cut(s) 147
HpyF10VI GCNNNNNNNGC 6 cut(s) 72, 81, 96, 102, 311, 436
HpyF3I CTNAG 1 cut(s) 128
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 5 cut(s) 88, 181, 190, 229, 434
HspAI GCGC 1 cut(s) 40
Kpn2I TCCGGA 1 cut(s) 77
Kzo9I GATC 2 cut(s) 162, 242
LmnI GCTCC 3 cut(s) 10, 80, 427
LpnPI CCDG 7 cut(s) 18, 85, 91, 115, 127, 360, 410
Lsp1109I GCAGC 1 cut(s) 54
LweI GCATC 1 cut(s) 301
MaeI CTAG 2 cut(s) 108, 153
MaeII ACGT 1 cut(s) 147
MalI GATC 2 cut(s) 164, 244
MboI GATC 2 cut(s) 162, 242
MboII GAAGA 3 cut(s) 172, 276, 283
MflI RGATCY 2 cut(s) 162, 242
MluCI AATT 2 cut(s) 280, 466
MroI TCCGGA 1 cut(s) 77
MseI TTAA 1 cut(s) 483
MslI CAYNNNNRTG 3 cut(s) 54, 176, 228
MspA1I CMGCKG 1 cut(s) 32
MspI CCGG 3 cut(s) 78, 114, 347
Mva1269I GAATGC 1 cut(s) 42
MwoI GCNNNNNNNGC 6 cut(s) 72, 81, 96, 102, 311, 436
NdeII GATC 2 cut(s) 162, 242
NlaIII CATG 5 cut(s) 88, 181, 190, 229, 434
NlaIV GGNNCC 2 cut(s) 6, 408
NmeAIII GCCGAG 1 cut(s) 340
NsbI TGCGCA 1 cut(s) 41
PagI TCATGA 1 cut(s) 186
PctI GAATGC 1 cut(s) 42
PkrI GCNGC 2 cut(s) 44, 98
PspN4I GGNNCC 2 cut(s) 6, 408
PspPI GGNCC 2 cut(s) 251, 344
PstNI CAGNNNCTG 1 cut(s) 23
PsuI RGATCY 2 cut(s) 162, 242
PvuII CAGCTG 1 cut(s) 32
RsaI GTAC 1 cut(s) 463
RsaNI GTAC 1 cut(s) 462
RseI CAYNNNNRTG 3 cut(s) 54, 176, 228
SaqAI TTAA 1 cut(s) 483
SatI GCNGC 2 cut(s) 43, 97
Sau3AI GATC 2 cut(s) 162, 242
Sau96I GGNCC 2 cut(s) 251, 344
SetI ASST 9 cut(s) 22, 34, 64, 77, 134, 150, 158, 238, 490
SfaNI GCATC 1 cut(s) 301
SfcI CTRYAG 1 cut(s) 27
SmiMI CAYNNNNRTG 3 cut(s) 54, 176, 228
Sse9I AATT 2 cut(s) 280, 466
SsiI CCGC 3 cut(s) 96, 99, 399
SspMI CTAG 2 cut(s) 108, 153
TaaI ACNGT 1 cut(s) 175
TaiI ACGT 1 cut(s) 150
TaqI TCGA 2 cut(s) 204, 294
TasI AATT 2 cut(s) 280, 466
TauI GCSGC 1 cut(s) 99
Tru1I TTAA 1 cut(s) 483
Tru9I TTAA 1 cut(s) 483
TscAI CASTG 1 cut(s) 220
TseI GCWGC 1 cut(s) 42
TspDTI ATGAA 3 cut(s) 190, 199, 246
TspRI CASTG 1 cut(s) 220
XapI RAATTY 1 cut(s) 280
XspI CTAG 2 cut(s) 108, 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.