Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000470.1

Orthogroup ID

OG0005408

Physical Location & Seq

Genomic Coordinates Forward (+)

62101 .. 65370

Gene Structure 3270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atgatcttttgttcaaggtttcccacagacggcgccaatgttaatgctcaaagtccggcggtagccgatctttcgtttaacgcgggtccggtgggcggaccctgtgatctgggggagatcctaggctcggacggtagcccacctggctgtgtctccgccggtcacccccttggtgagattcggtacctctggcagtacaatgagctgcccacatccttcgtcggatccgtcttctacaactcccccatccgcttcttcgacctcgactccaacaccaccgcctccttctccacccgctttaccttctcattctccaacctcaacccctcctccttctgcgacgacatgtcatttttcctctcccctaacaaccaaaccctcggcagctccggcaactatctgggtctagtcaactcctcccaatggacccaaaacaagttcatcgccatcgaattcgatacccagcaagatacccactttgccgacccgaacgacaaccatgtgggtcttgacatcgatagcctgttctcgatcaagaccgcagacccgattgaccaagaagttgacttgaagagcggcatggccatcatggcatggatctaccagcaactcctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0016020 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

205

Amino Acids

22.37

Weight (kDa)

4.07

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	74 - 200	2.5e-33	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55830
fragaria_vesca	FvH4_2g31170 FvH4_3g42990 FvH4_4g09342 FvH4_4g11641
malus_domestica	MD03G1026600.v1.1 MD11G1030600.v1.1
prunus_persica	Prupe.6G024000_v2.0.a1
pyrus_communis	pycom03g02180 pycom11g02420 pycom11g02430 pycom11g02480
rosa_chinensis	RchiOBHm_Chr5g0077031
rosa_laevigata	RLG00000036643
rosa_multiflora	Rmu_sc0003323.1_g000008 Rmu_sc0018789.1_g000001 Rmu_ssc0000470.1_g000027
rosa_roxburghii	Rroxscaffold_1G00005100
rosa_rugosa	Rorug05G0450500
rosa_samantha	Rh5AG505100 Rh5BG416900 Rh5BG526800 Rh5CG441400 Rh5CG550600 Rh5DG539000 Rh6AG352200 Rh6CG162900 Rh6DG154500
rosa_wichuraiana	Rw5G047130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	183
AccB1I	GGYRCC	2 cut(s)	32, 183
AccBSI	CCGCTC	1 cut(s)	576
AccII	CGCG	1 cut(s)	83
AciI	CCGC	9 cut(s)	59, 83, 96, 156, 250, 279, 295, 540, 576
AclWI	GGATC	4 cut(s)	112, 219, 232, 605
AcoI	YGGCCR	1 cut(s)	582
AcsI	RAATTY	1 cut(s)	452
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	2 cut(s)	185, 197
AfiI	CCNNNNNNNGG	4 cut(s)	29, 95, 127, 423
AflIII	ACRYGT	1 cut(s)	345
AgsI	TTSAA	2 cut(s)	15, 571
AhdI	GACNNNNNGTC	1 cut(s)	346
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	2 cut(s)	205, 387
AluI	AGCT	2 cut(s)	205, 387
Alw26I	GTCTC	1 cut(s)	157
AlwI	GGATC	4 cut(s)	112, 219, 232, 605
AoxI	GGCC	1 cut(s)	582
ApeKI	GCWGC	2 cut(s)	205, 384
ApoI	RAATTY	1 cut(s)	452
Asp718I	GGTACC	1 cut(s)	183
AspA2I	CCTAGG	1 cut(s)	121
AspLEI	GCGC	1 cut(s)	35
AspS9I	GGNCC	3 cut(s)	86, 98, 426
AsuHPI	GGTGA	2 cut(s)	155, 185
AvaII	GGWCC	3 cut(s)	86, 98, 426
AvrII	CCTAGG	1 cut(s)	121
BalI	TGGCCA	1 cut(s)	584
BamHI	GGATCC	1 cut(s)	224
BanI	GGYRCC	2 cut(s)	32, 183
BbsI	GAAGAC	1 cut(s)	223
BbvI	GCAGC	2 cut(s)	192, 396
BccI	CCATC	3 cut(s)	254, 455, 593
BceAI	ACGGC	1 cut(s)	46
BciT130I	CCWGG	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	2 cut(s)	122, 407
BfoI	RGCGCY	1 cut(s)	36
BglI	GCCNNNNNGGC	2 cut(s)	144, 590
BisI	GCNGC	3 cut(s)	206, 385, 577
BlnI	CCTAGG	1 cut(s)	121
BlsI	GCNGC	3 cut(s)	207, 386, 578
Bme1390I	CCNGG	1 cut(s)	144
Bme18I	GGWCC	3 cut(s)	86, 98, 426
BmeRI	GACNNNNNGTC	1 cut(s)	346
BmgT120I	GGNCC	3 cut(s)	86, 98, 426
BmiI	GGNNCC	6 cut(s)	34, 87, 100, 185, 226, 428
BmrFI	CCNGG	1 cut(s)	144
BpiI	GAAGAC	1 cut(s)	223
Bsa29I	ATCGAT	1 cut(s)	516
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	3 cut(s)	121, 169, 379
BsaWI	WCCGGW	1 cut(s)	88
BsaXI	ACNNNNNCTCC	4 cut(s)	251, 281, 314, 344
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 95, 127, 423
Bse118I	RCCGGY	1 cut(s)	158
BseBI	CCWGG	1 cut(s)	144
BseCI	ATCGAT	1 cut(s)	516
BseDI	CCNNGG	3 cut(s)	121, 169, 379
BseGI	GGATG	2 cut(s)	212, 246
BseLI	CCNNNNNNNGG	4 cut(s)	29, 95, 127, 423
BseRI	GAGGAG	2 cut(s)	319, 406
BseXI	GCAGC	2 cut(s)	192, 396
BseYI	CCCAGC	1 cut(s)	462
Bsh1236I	CGCG	1 cut(s)	83
BshFI	GGCC	1 cut(s)	584
BshNI	GGYRCC	2 cut(s)	32, 183
BshVI	ATCGAT	1 cut(s)	516
BsiSI	CCGG	4 cut(s)	56, 89, 159, 390
BslI	CCNNNNNNNGG	4 cut(s)	29, 95, 127, 423
BsmAI	GTCTC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	584
Bsp143I	GATC	7 cut(s)	3, 67, 106, 117, 224, 531, 597
BspACI	CCGC	9 cut(s)	59, 83, 96, 156, 250, 279, 295, 540, 576
BspANI	GGCC	1 cut(s)	584
BspDI	ATCGAT	1 cut(s)	516
BspFNI	CGCG	1 cut(s)	83
BspLI	GGNNCC	6 cut(s)	34, 87, 100, 185, 226, 428
BspPI	GGATC	4 cut(s)	112, 219, 232, 605
BspQI	GCTCTTC	1 cut(s)	566
BspT107I	GGYRCC	2 cut(s)	32, 183
BsrBI	CCGCTC	1 cut(s)	576
BsrFI	RCCGGY	1 cut(s)	158
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	3 cut(s)	121, 169, 379
BssMI	GATC	7 cut(s)	3, 67, 106, 117, 224, 531, 597
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	2 cut(s)	121, 169
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	134
Bst6I	CTCTTC	1 cut(s)	566
BstACI	GRCGYC	1 cut(s)	33
BstEII	GGTNACC	1 cut(s)	161
BstF5I	GGATG	2 cut(s)	212, 246
BstFNI	CGCG	1 cut(s)	83
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	7 cut(s)	6, 70, 109, 120, 227, 534, 600
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	7 cut(s)	3, 67, 106, 117, 224, 531, 597
BstMWI	GCNNNNNNNGC	3 cut(s)	144, 390, 590
BstNI	CCWGG	1 cut(s)	144
BstNSI	RCATGY	1 cut(s)	349
BstPI	GGTNACC	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	142
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	2 cut(s)	192, 396
BstV2I	GAAGAC	1 cut(s)	223
BstX2I	RGATCY	3 cut(s)	117, 224, 597
BstYI	RGATCY	3 cut(s)	117, 224, 597
Bsu15I	ATCGAT	1 cut(s)	516
BsuRI	GGCC	1 cut(s)	584
BsuTUI	ATCGAT	1 cut(s)	516
BtgZI	GCGATG	1 cut(s)	427
BtsCI	GGATG	2 cut(s)	212, 246
CfoI	GCGC	1 cut(s)	35
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	3 cut(s)	86, 98, 426
ClaI	ATCGAT	1 cut(s)	516
Csp6I	GTAC	2 cut(s)	184, 196
CviAII	CATG	5 cut(s)	346, 500, 580, 589, 594
CviJI	RGCY	8 cut(s)	65, 126, 138, 147, 205, 387, 522, 584
CviKI_1	RGCY	8 cut(s)	65, 126, 138, 147, 205, 387, 522, 584
CviQI	GTAC	2 cut(s)	184, 196
DinI	GGCGCC	1 cut(s)	34
DpnI	GATC	7 cut(s)	5, 69, 108, 119, 226, 533, 599
DpnII	GATC	7 cut(s)	3, 67, 106, 117, 224, 531, 597
DriI	GACNNNNNGTC	1 cut(s)	346
EaeI	YGGCCR	1 cut(s)	582
Eam1104I	CTCTTC	1 cut(s)	566
Eam1105I	GACNNNNNGTC	1 cut(s)	346
EarI	CTCTTC	1 cut(s)	566
EciI	GGCGGA	2 cut(s)	111, 145
Eco130I	CCWWGG	2 cut(s)	121, 169
Eco47I	GGWCC	3 cut(s)	86, 98, 426
Eco91I	GGTNACC	1 cut(s)	161
EcoO65I	GGTNACC	1 cut(s)	161
EcoRI	GAATTC	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	142
EcoT14I	CCWWGG	2 cut(s)	121, 169
EgeI	GGCGCC	1 cut(s)	34
EheI	GGCGCC	1 cut(s)	34
ErhI	CCWWGG	2 cut(s)	121, 169
FaeI	CATG	5 cut(s)	349, 503, 583, 592, 597
FaiI	YATR	5 cut(s)	347, 501, 581, 590, 595
FatI	CATG	5 cut(s)	345, 499, 579, 588, 593
FauI	CCCGC	2 cut(s)	76, 302
Fnu4HI	GCNGC	3 cut(s)	206, 385, 577
FokI	GGATG	2 cut(s)	199, 233
Fsp4HI	GCNGC	3 cut(s)	206, 385, 577
FspBI	CTAG	2 cut(s)	122, 407
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	3 cut(s)	206, 385, 577
GsaI	CCCAGC	1 cut(s)	466
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	584
HapII	CCGG	4 cut(s)	56, 89, 159, 390
HhaI	GCGC	1 cut(s)	35
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	5 cut(s)	349, 503, 583, 592, 597
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HincII	GTYRAC	2 cut(s)	412, 565
HindII	GTYRAC	2 cut(s)	412, 565
HinfI	GANTC	2 cut(s)	178, 266
HpaII	CCGG	4 cut(s)	56, 89, 159, 390
HphI	GGTGA	2 cut(s)	155, 185
Hpy166II	GTNNAC	2 cut(s)	412, 565
Hpy188I	TCNGA	2 cut(s)	130, 224
Hpy188III	TCNNGA	3 cut(s)	509, 529, 535
Hpy8I	GTNNAC	2 cut(s)	412, 565
Hpy99I	CGWCG	2 cut(s)	224, 344
HpyAV	CCTTC	4 cut(s)	226, 295, 313, 343
HpyCH4III	ACNGT	1 cut(s)	134
HpyF10VI	GCNNNNNNNGC	3 cut(s)	144, 390, 590
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	5 cut(s)	349, 503, 583, 592, 597
HspAI	GCGC	1 cut(s)	33
KasI	GGCGCC	1 cut(s)	32
KpnI	GGTACC	1 cut(s)	187
Kzo9I	GATC	7 cut(s)	3, 67, 106, 117, 224, 531, 597
LguI	GCTCTTC	1 cut(s)	566
LmnI	GCTCC	1 cut(s)	392
Lsp1109I	GCAGC	2 cut(s)	192, 396
MaeI	CTAG	2 cut(s)	122, 407
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	7 cut(s)	5, 69, 108, 119, 226, 533, 599
MbiI	CCGCTC	1 cut(s)	576
MboI	GATC	7 cut(s)	3, 67, 106, 117, 224, 531, 597
MboII	GAAGA	3 cut(s)	223, 247, 583
MflI	RGATCY	3 cut(s)	117, 224, 597
MlsI	TGGCCA	1 cut(s)	584
MluCI	AATT	1 cut(s)	452
MluNI	TGGCCA	1 cut(s)	584
Mly113I	GGCGCC	1 cut(s)	33
MlyI	GAGTC	1 cut(s)	260
MmeI	TCCRAC	3 cut(s)	202, 294, 339
MnlI	CCTC	9 cut(s)	197, 272, 292, 329, 337, 340, 368, 389, 427
Mox20I	TGGCCA	1 cut(s)	584
MscI	TGGCCA	1 cut(s)	584
MseI	TTAA	2 cut(s)	42, 78
Msp20I	TGGCCA	1 cut(s)	584
MspI	CCGG	4 cut(s)	56, 89, 159, 390
MspR9I	CCNGG	1 cut(s)	144
MvaI	CCWGG	1 cut(s)	144
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	3 cut(s)	144, 390, 590
NarI	GGCGCC	1 cut(s)	33
NdeII	GATC	7 cut(s)	3, 67, 106, 117, 224, 531, 597
NlaIII	CATG	5 cut(s)	349, 503, 583, 592, 597
NlaIV	GGNNCC	6 cut(s)	34, 87, 100, 185, 226, 428
NmeAIII	GCCGAG	1 cut(s)	360
NmuCI	GTSAC	1 cut(s)	161
NspI	RCATGY	1 cut(s)	349
PciI	ACATGT	1 cut(s)	345
PciSI	GCTCTTC	1 cut(s)	566
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	178
PkrI	GCNGC	3 cut(s)	207, 386, 578
PleI	GAGTC	1 cut(s)	260
PluTI	GGCGCC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	260
PscI	ACATGT	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	142
PspEI	GGTNACC	1 cut(s)	161
PspFI	CCCAGC	1 cut(s)	462
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	6 cut(s)	34, 87, 100, 185, 226, 428
PspPI	GGNCC	3 cut(s)	86, 98, 426
PsuI	RGATCY	3 cut(s)	117, 224, 597
RsaI	GTAC	2 cut(s)	185, 197
RsaNI	GTAC	2 cut(s)	184, 196
SapI	GCTCTTC	1 cut(s)	566
SaqAI	TTAA	2 cut(s)	42, 78
SatI	GCNGC	3 cut(s)	206, 385, 577
Sau3AI	GATC	7 cut(s)	3, 67, 106, 117, 224, 531, 597
Sau96I	GGNCC	3 cut(s)	86, 98, 426
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	1 cut(s)	144
SetI	ASST	8 cut(s)	20, 145, 189, 207, 264, 305, 321, 389
SfoI	GGCGCC	1 cut(s)	34
SinI	GGWCC	3 cut(s)	86, 98, 426
Sse9I	AATT	1 cut(s)	452
SsiI	CCGC	9 cut(s)	59, 83, 96, 156, 250, 279, 295, 540, 576
SspDI	GGCGCC	1 cut(s)	32
SspMI	CTAG	2 cut(s)	122, 407
StyD4I	CCNGG	1 cut(s)	142
StyI	CCWWGG	2 cut(s)	121, 169
TaaI	ACNGT	1 cut(s)	134
TaqI	TCGA	6 cut(s)	258, 264, 450, 456, 516, 530
TasI	AATT	1 cut(s)	452
TatI	WGTACW	1 cut(s)	195
TauI	GCSGC	1 cut(s)	579
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	2 cut(s)	42, 78
Tru9I	TTAA	2 cut(s)	42, 78
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	2 cut(s)	205, 384
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	1 cut(s)	430
TspGWI	ACGGA	1 cut(s)	217
VpaK11BI	GGWCC	3 cut(s)	86, 98, 426
XapI	RAATTY	1 cut(s)	452
XceI	RCATGY	1 cut(s)	349
XmaJI	CCTAGG	1 cut(s)	121
XspI	CTAG	2 cut(s)	122, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.