Rmu_ssc0000482.1_g000001

The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000482.1
OG0004014
Physical Location & Seq
Forward (+)
1 .. 199
199 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 199 bp
agccctcttcttcctcgaatcccataattacgacctcgacgccgccgtttccactttcttggacaacgaaaacgccgccgcagtcaccgtcaccaacccggtccagccctcccactcgctctcgccgtctccgtcacacttgctcgagtactcgccctcccagtcgacccctcgatgtttcccaagtcctccttattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000096 GO:0000902 GO:0000904 GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006520 GO:0006534 GO:0006555 GO:0006575 GO:0006725 GO:0006732 GO:0006790 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009058 GO:0009066 GO:0009069 GO:0009116 GO:0009119 GO:0009653 GO:0009759 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010026 GO:0010090 GO:0010646 GO:0010648 GO:0016043 GO:0016143 GO:0016144 GO:0017144 GO:0018130 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023051 GO:0023057 GO:0030154 GO:0031323 GO:0031347 GO:0031348 GO:0032502 GO:0032989 GO:0033353 GO:0034641 GO:0042278 GO:0042343 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045088 GO:0045824 GO:0046128 GO:0046439 GO:0046483 GO:0046498 GO:0046500 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051186 GO:0055086 GO:0065007 GO:0071704 GO:0071840 GO:0072521 GO:0080134 GO:0080183 GO:0090342 GO:0090558 GO:0090626 GO:0097159 GO:1900457 GO:1900458 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901657 GO:1901659 GO:2000377
KEGG Pathways
Metabolic & Signaling
ko03015 ko04071 ko04113 ko04114 ko04151 ko04152 ko04261 ko04728 ko05165 map03015 map04071 map04113 map04114 map04151 map04152 map04261 map04728 map05165
Pfam Domains
Protein Families
B56

Protein Analysis

65

Amino Acids

7.06

Weight (kDa)

4.56

Isoelectric Point (pI)

78.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBA_4 PF14555 1 - 24 5.3e-06 UBA-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 165
AciI CCGC 3 cut(s) 43, 76, 79
AcyI GRCGYC 1 cut(s) 40
AfaI GTAC 1 cut(s) 150
Alw26I GTCTC 1 cut(s) 133
Ama87I CYCGRG 1 cut(s) 144
AspS9I GGNCC 1 cut(s) 101
AsuC2I CCSGG 1 cut(s) 99
AsuHPI GGTGA 2 cut(s) 77, 83
AvaI CYCGRG 1 cut(s) 144
AvaII GGWCC 1 cut(s) 101
BceAI ACGGC 2 cut(s) 30, 110
BcnI CCSGG 1 cut(s) 99
BcoDI GTCTC 1 cut(s) 133
BisI GCNGC 3 cut(s) 43, 76, 79
BlsI GCNGC 3 cut(s) 44, 77, 80
BmcAI AGTACT 1 cut(s) 150
Bme1390I CCNGG 1 cut(s) 99
Bme18I GGWCC 1 cut(s) 101
BmeT110I CYCGRG 1 cut(s) 144
BmgT120I GGNCC 1 cut(s) 101
BmrFI CCNGG 1 cut(s) 99
BmrI ACTGGG 1 cut(s) 155
BmuI ACTGGG 1 cut(s) 155
BpuMI CCSGG 1 cut(s) 99
BsaHI GRCGYC 1 cut(s) 40
BsaXI ACNNNNNCTCC 2 cut(s) 141, 171
Bse1I ACTGG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 161
BsiHKCI CYCGRG 1 cut(s) 144
BsiSI CCGG 1 cut(s) 99
BsmAI GTCTC 1 cut(s) 133
BsmBI CGTCTC 1 cut(s) 133
BsoBI CYCGRG 1 cut(s) 144
BspACI CCGC 3 cut(s) 43, 76, 79
BsrI ACTGG 1 cut(s) 161
BssNI GRCGYC 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 89
Bst6I CTCTTC 1 cut(s) 12
BstACI GRCGYC 1 cut(s) 40
BstMAI GTCTC 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 97
BstXI CCANNNNNNTGG 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 101
CseI GACGC 1 cut(s) 48
Csp6I GTAC 1 cut(s) 149
CviJI RGCY 2 cut(s) 3, 107
CviKI_1 RGCY 2 cut(s) 3, 107
CviQI GTAC 1 cut(s) 149
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Eco47I GGWCC 1 cut(s) 101
Eco88I CYCGRG 1 cut(s) 144
Esp3I CGTCTC 1 cut(s) 133
FaiI YATR 1 cut(s) 25
FalI AAGNNNNNCTT 1 cut(s) 176
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 3 cut(s) 43, 76, 79
Fsp4HI GCNGC 3 cut(s) 43, 76, 79
GluI GCNGC 3 cut(s) 43, 76, 79
HapII CCGG 1 cut(s) 99
HgaI GACGC 1 cut(s) 48
Hin1I GRCGYC 1 cut(s) 40
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HinfI GANTC 1 cut(s) 18
HpaII CCGG 1 cut(s) 99
HphI GGTGA 2 cut(s) 77, 83
Hpy166II GTNNAC 1 cut(s) 166
Hpy8I GTNNAC 1 cut(s) 166
Hpy99I CGWCG 1 cut(s) 42
HpyCH4III ACNGT 1 cut(s) 89
Hsp92I GRCGYC 1 cut(s) 40
LpnPI CCDG 3 cut(s) 112, 117, 174
MaeIII GTNAC 3 cut(s) 83, 89, 133
MluCI AATT 1 cut(s) 26
MnlI CCTC 7 cut(s) 15, 24, 45, 119, 167, 181, 199
MseI TTAA 1 cut(s) 197
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 1 cut(s) 99
NciI CCSGG 1 cut(s) 99
NmuCI GTSAC 3 cut(s) 83, 89, 133
PaeR7I CTCGAG 1 cut(s) 144
PcsI WCGNNNNNNNCGW 3 cut(s) 43, 123, 129
PfeI GAWTC 1 cut(s) 18
PkrI GCNGC 3 cut(s) 44, 77, 80
PspPI GGNCC 1 cut(s) 101
PspXI VCTCGAGB 1 cut(s) 144
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
SalI GTCGAC 1 cut(s) 164
SaqAI TTAA 1 cut(s) 197
SatI GCNGC 3 cut(s) 43, 76, 79
Sau96I GGNCC 1 cut(s) 101
ScaI AGTACT 1 cut(s) 150
ScrFI CCNGG 1 cut(s) 99
SetI ASST 1 cut(s) 37
Sfr274I CTCGAG 1 cut(s) 144
SinI GGWCC 1 cut(s) 101
SlaI CTCGAG 1 cut(s) 144
SmlI CTYRAG 1 cut(s) 144
SmoI CTYRAG 1 cut(s) 144
Sse9I AATT 1 cut(s) 26
SsiI CCGC 3 cut(s) 43, 76, 79
StyD4I CCNGG 1 cut(s) 97
TaaI ACNGT 1 cut(s) 89
TaqI TCGA 5 cut(s) 16, 37, 145, 165, 173
TasI AATT 1 cut(s) 26
TatI WGTACW 1 cut(s) 148
TauI GCSGC 3 cut(s) 45, 78, 81
TfiI GAWTC 1 cut(s) 18
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TseFI GTSAC 3 cut(s) 83, 89, 133
Tsp45I GTSAC 3 cut(s) 83, 89, 133
TspGWI ACGGA 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 101
XhoI CTCGAG 1 cut(s) 144
XmiI GTMKAC 1 cut(s) 165
ZrmI AGTACT 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.