Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006965

Physical Location & Seq

Genomic Coordinates Forward (+)

35436032 .. 35440080

Gene Structure 4049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00110940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCAGCAATATTTGCAACAGAGAGAAAATTAAATGATACTGGATTAGCTGTCAAAACAAGCAGCGTATACATCTTGGACATGCATATAGCAGGATCTTTACCCCAAGCATCGTTACACGCTCACAAGGCTGTATGTGACTACGAGAGCAGATTGGTTCAATGGTGCTTTGAGCAAGGGGCAAAGGCAGGGCAGGCTGCAGGATCATGTTCGATTGTAACACCGCGTGGCGGTCACTATCGCGGTGAGACGTTGCCTTGGGAATCGCCGTTGGCGGAAGTCCCTCCGCCGATAACGAGTGATCAGCGTTGTCGCCGGAACATGCCTGTCGGCTTGACCGTGCATGGGTTCCTTTGCGATGTACGGGGAGAAGTTCCGCTAGCGGAGTTGCGCTTAGCGGAGACTAACTCGCTTGCAAGATGGAAAGGGAGAAGTTCCGCTAGAGGAGTTGAGCATAGCGGAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

16.78

Weight (kDa)

7.71

Isoelectric Point (pI)

51.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006965)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0146011
rosa_laevigata	RLG00000010267
rosa_multiflora	Rmu_sc0022686.1_g000002
rosa_roxburghii	Rroxscaffold_1G00027380 Rroxscaffold_2G00110940 Rroxscaffold_2G00121620 Rroxscaffold_2G00143750 Rroxscaffold_3G00238040 Rroxscaffold_4G00298100 Rroxscaffold_4G00307350 Rroxscaffold_5G00337660 Rroxscaffold_5G00346680 Rroxscaffold_5G00364780 Rroxscaffold_5G00366680 Rroxscaffold_6G00406170 Rroxscaffold_7G00189440
rosa_rugosa	Rorug01G0433400 Rorug03G0172600 Rorug03G0172700 Rorug03G0368000.1
rosa_samantha	Rh1DG097800 Rh2BG125800 Rh2DG127800 Rh3BG286500 Rh5BG445000 Rh7CG204100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	69
AccII	CGCG	2 cut(s)	226, 243
AclWI	GGATC	2 cut(s)	103, 211
AdeI	CACNNNGTG	1 cut(s)	227
AfaI	GTAC	1 cut(s)	363
AfiI	CCNNNNNNNGG	2 cut(s)	230, 345
AgsI	TTSAA	1 cut(s)	161
AluBI	AGCT	1 cut(s)	50
AluI	AGCT	1 cut(s)	50
Alw26I	GTCTC	3 cut(s)	242, 395, 456
AlwI	GGATC	2 cut(s)	103, 211
ApeKI	GCWGC	3 cut(s)	5, 63, 197
AspLEI	GCGC	1 cut(s)	393
AsuHPI	GGTGA	1 cut(s)	257
AsuNHI	GCTAGC	1 cut(s)	379
BbvI	GCAGC	3 cut(s)	17, 75, 184
BccI	CCATC	1 cut(s)	414
BceAI	ACGGC	1 cut(s)	253
BclI	TGATCA	1 cut(s)	301
BcoDI	GTCTC	3 cut(s)	242, 395, 456
BfaI	CTAG	2 cut(s)	380, 441
BfmI	CTRYAG	1 cut(s)	198
BisI	GCNGC	3 cut(s)	6, 64, 198
BlpI	GCTNAGC	1 cut(s)	394
BlsI	GCNGC	3 cut(s)	7, 65, 199
BmiI	GGNNCC	1 cut(s)	350
BmsI	GCATC	1 cut(s)	119
BmtI	GCTAGC	1 cut(s)	383
BplI	GAGNNNNNCTC	2 cut(s)	392, 424
Bpu1102I	GCTNAGC	1 cut(s)	394
BsaJI	CCNNGG	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 345
Bse1I	ACTGG	1 cut(s)	46
BseDI	CCNNGG	1 cut(s)	257
BseLI	CCNNNNNNNGG	2 cut(s)	230, 345
BseNI	ACTGG	1 cut(s)	46
BseRI	GAGGAG	1 cut(s)	459
BseXI	GCAGC	3 cut(s)	17, 75, 184
Bsh1236I	CGCG	2 cut(s)	226, 243
BsiSI	CCGG	1 cut(s)	316
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	2 cut(s)	230, 345
BsmAI	GTCTC	3 cut(s)	242, 395, 456
BsmBI	CGTCTC	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	266
Bsp143I	GATC	3 cut(s)	95, 203, 301
Bsp1720I	GCTNAGC	1 cut(s)	394
BspFNI	CGCG	2 cut(s)	226, 243
BspLI	GGNNCC	1 cut(s)	350
BspMAI	CTGCAG	1 cut(s)	202
BspOI	GCTAGC	1 cut(s)	383
BspPI	GGATC	2 cut(s)	103, 211
BsrI	ACTGG	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	257
BssMI	GATC	3 cut(s)	95, 203, 301
BssNAI	GTATAC	1 cut(s)	70
BssT1I	CCWWGG	1 cut(s)	257
Bst1107I	GTATAC	1 cut(s)	70
Bst4CI	ACNGT	1 cut(s)	340
BstAPI	GCANNNNNTGC	1 cut(s)	14
BstC8I	GCNNGC	3 cut(s)	195, 381, 414
BstDEI	CTNAG	1 cut(s)	394
BstFNI	CGCG	2 cut(s)	226, 243
BstHHI	GCGC	1 cut(s)	393
BstKTI	GATC	3 cut(s)	98, 206, 304
BstMAI	GTCTC	3 cut(s)	242, 395, 456
BstMBI	GATC	3 cut(s)	95, 203, 301
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 128, 194
BstNSI	RCATGY	2 cut(s)	85, 325
BstSFI	CTRYAG	1 cut(s)	198
BstUI	CGCG	2 cut(s)	226, 243
BstV1I	GCAGC	3 cut(s)	17, 75, 184
BstX2I	RGATCY	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	95
BstZ17I	GTATAC	1 cut(s)	70
BtgZI	GCGATG	1 cut(s)	372
Cac8I	GCNNGC	3 cut(s)	195, 381, 414
CfoI	GCGC	1 cut(s)	393
Csp6I	GTAC	1 cut(s)	362
CviAII	CATG	4 cut(s)	82, 207, 322, 344
CviJI	RGCY	4 cut(s)	50, 131, 197, 333
CviKI_1	RGCY	4 cut(s)	50, 131, 197, 333
CviQI	GTAC	1 cut(s)	362
DdeI	CTNAG	1 cut(s)	394
DpnI	GATC	3 cut(s)	97, 205, 303
DpnII	GATC	3 cut(s)	95, 203, 301
DraIII	CACNNNGTG	1 cut(s)	227
EciI	GGCGGA	2 cut(s)	276, 290
Eco130I	CCWWGG	1 cut(s)	257
EcoT14I	CCWWGG	1 cut(s)	257
EcoT22I	ATGCAT	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	257
Esp3I	CGTCTC	1 cut(s)	242
FaeI	CATG	4 cut(s)	85, 210, 325, 347
FaiI	YATR	9 cut(s)	70, 83, 87, 89, 136, 208, 323, 345, 456
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	4 cut(s)	81, 206, 321, 343
FbaI	TGATCA	1 cut(s)	301
FblI	GTMKAC	1 cut(s)	69
Fnu4HI	GCNGC	3 cut(s)	6, 64, 198
Fsp4HI	GCNGC	3 cut(s)	6, 64, 198
FspBI	CTAG	2 cut(s)	380, 441
GlaI	GCGC	1 cut(s)	392
GluI	GCNGC	3 cut(s)	6, 64, 198
HapII	CCGG	1 cut(s)	316
HhaI	GCGC	1 cut(s)	393
Hin1II	CATG	4 cut(s)	85, 210, 325, 347
Hin6I	GCGC	1 cut(s)	391
HinP1I	GCGC	1 cut(s)	391
HinfI	GANTC	1 cut(s)	263
HpaII	CCGG	1 cut(s)	316
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	1 cut(s)	70
Hpy8I	GTNNAC	1 cut(s)	70
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	5 cut(s)	17, 85, 200, 343, 416
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 128, 194
HpyF3I	CTNAG	1 cut(s)	394
HpySE526I	ACGT	1 cut(s)	251
Hsp92II	CATG	4 cut(s)	85, 210, 325, 347
HspAI	GCGC	1 cut(s)	391
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	95, 203, 301
LpnPI	CCDG	7 cut(s)	27, 78, 174, 179, 186, 329, 339
Lsp1109I	GCAGC	3 cut(s)	17, 75, 184
LweI	GCATC	1 cut(s)	119
MaeI	CTAG	2 cut(s)	380, 441
MaeII	ACGT	1 cut(s)	251
MaeIII	GTNAC	4 cut(s)	114, 137, 217, 233
MalI	GATC	3 cut(s)	97, 205, 303
MboI	GATC	3 cut(s)	95, 203, 301
MflI	RGATCY	1 cut(s)	95
MluCI	AATT	1 cut(s)	29
MnlI	CCTC	2 cut(s)	294, 437
Mph1103I	ATGCAT	1 cut(s)	87
MseI	TTAA	1 cut(s)	32
MspI	CCGG	1 cut(s)	316
MvnI	CGCG	2 cut(s)	226, 243
MwoI	GCNNNNNNNGC	3 cut(s)	14, 128, 194
NdeII	GATC	3 cut(s)	95, 203, 301
NheI	GCTAGC	1 cut(s)	379
NlaIII	CATG	4 cut(s)	85, 210, 325, 347
NlaIV	GGNNCC	1 cut(s)	350
NmuCI	GTSAC	2 cut(s)	137, 233
NsiI	ATGCAT	1 cut(s)	87
NspI	RCATGY	2 cut(s)	85, 325
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	263
PkrI	GCNGC	3 cut(s)	7, 65, 199
PspN4I	GGNNCC	1 cut(s)	350
PstI	CTGCAG	1 cut(s)	202
PsuI	RGATCY	1 cut(s)	95
RsaI	GTAC	1 cut(s)	363
RsaNI	GTAC	1 cut(s)	362
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	3 cut(s)	6, 64, 198
Sau3AI	GATC	3 cut(s)	95, 203, 301
SetI	ASST	2 cut(s)	52, 254
SfaNI	GCATC	1 cut(s)	119
SfcI	CTRYAG	1 cut(s)	198
Sse9I	AATT	1 cut(s)	29
SspI	AATATT	1 cut(s)	12
SspMI	CTAG	2 cut(s)	380, 441
StyI	CCWWGG	1 cut(s)	257
TaaI	ACNGT	1 cut(s)	340
TaiI	ACGT	1 cut(s)	254
TaqI	TCGA	1 cut(s)	212
TasI	AATT	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	263
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TseFI	GTSAC	2 cut(s)	137, 233
TseI	GCWGC	3 cut(s)	5, 63, 197
Tsp45I	GTSAC	2 cut(s)	137, 233
XceI	RCATGY	2 cut(s)	85, 325
XmiI	GTMKAC	1 cut(s)	69
XspI	CTAG	2 cut(s)	380, 441
Zsp2I	ATGCAT	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.