Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006965

Physical Location & Seq

Genomic Coordinates Forward (+)

14593943 .. 14595858

Gene Structure 1916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0172700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGCCTCCGACTCCGACTCCGACTCCGGCAAGGGCCAGTGGTGATGAGCTGATGGCAAAGCAGAAGGCAGCAGTGAACATGATCATGACTGCTGCATTGCTTGTGACTTGCGTGAGCCTCCGTCGATTCGTGGTTCCACTTTCGAAAGGCAACTTTCTGCTCAGGGAATTGGCTCTCTTCTGGTTCATAAGCACAATCATGCTCATTCCTATCAATCTCTTCACCTTTGTTGTCTTTGTCTATCATTTCCAAGGGGAAAACATCAGGAGAACCATTGGTTTCTTCTGTCTCTGGGGAGCTATATCCTTTGGTCTTCGGTATTTAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005887 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0007155 GO:0007275 GO:0007596 GO:0007599 GO:0008150 GO:0008152 GO:0009056 GO:0009555 GO:0009611 GO:0009653 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016021 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017110 GO:0017111 GO:0019439 GO:0022414 GO:0022607 GO:0022610 GO:0030198 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0034641 GO:0034655 GO:0034656 GO:0042060 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0045229 GO:0046483 GO:0046700 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050817 GO:0050878 GO:0050896 GO:0055086 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0085029 GO:0090567 GO:0099402 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko05169 map00230 map00240 map05169

Pfam Domains

Protein Families

GDA1_CD39

Protein Analysis

109

Amino Acids

12.33

Weight (kDa)

10.18

Isoelectric Point (pI)

38.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006965)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0146011
rosa_laevigata	RLG00000010267
rosa_multiflora	Rmu_sc0022686.1_g000002
rosa_roxburghii	Rroxscaffold_1G00027380 Rroxscaffold_2G00110940 Rroxscaffold_2G00121620 Rroxscaffold_2G00143750 Rroxscaffold_3G00238040 Rroxscaffold_4G00298100 Rroxscaffold_4G00307350 Rroxscaffold_5G00337660 Rroxscaffold_5G00346680 Rroxscaffold_5G00364780 Rroxscaffold_5G00366680 Rroxscaffold_6G00406170 Rroxscaffold_7G00189440
rosa_rugosa	Rorug01G0433400 Rorug03G0172600 Rorug03G0172700 Rorug03G0368000.1
rosa_samantha	Rh1DG097800 Rh2BG125800 Rh2DG127800 Rh3BG286500 Rh5BG445000 Rh7CG204100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AluBI	AGCT	2 cut(s)	49, 299
AluI	AGCT	2 cut(s)	49, 299
Alw26I	GTCTC	1 cut(s)	293
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	2 cut(s)	68, 92
AspS9I	GGNCC	1 cut(s)	33
AsuHPI	GGTGA	2 cut(s)	53, 214
AsuII	TTCGAA	1 cut(s)	143
BbsI	GAAGAC	1 cut(s)	305
BbvI	GCAGC	2 cut(s)	79, 80
BccI	CCATC	1 cut(s)	46
BclI	TGATCA	1 cut(s)	81
BcoDI	GTCTC	1 cut(s)	293
BisI	GCNGC	2 cut(s)	69, 93
BlsI	GCNGC	2 cut(s)	70, 94
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	1 cut(s)	135
BpiI	GAAGAC	1 cut(s)	305
Bpu10I	CCTNAGC	1 cut(s)	161
Bpu14I	TTCGAA	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	250
BsaXI	ACNNNNNCTCC	3 cut(s)	7, 31, 37
Bse1I	ACTGG	1 cut(s)	36
Bse3DI	GCAATG	1 cut(s)	95
BseDI	CCNNGG	1 cut(s)	250
BseMI	GCAATG	1 cut(s)	95
BseMII	CTCAG	1 cut(s)	175
BseNI	ACTGG	1 cut(s)	36
BseXI	GCAGC	2 cut(s)	79, 80
BshFI	GGCC	1 cut(s)	35
BsiSI	CCGG	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	35
Bsp119I	TTCGAA	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	81
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	174
BspHI	TCATGA	1 cut(s)	84
BspLI	GGNNCC	1 cut(s)	135
BspT104I	TTCGAA	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	36
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	1 cut(s)	81
BssT1I	CCWWGG	1 cut(s)	250
Bst6I	CTCTTC	2 cut(s)	182, 224
BstBI	TTCGAA	1 cut(s)	143
BstDEI	CTNAG	1 cut(s)	161
BstKTI	GATC	1 cut(s)	84
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	1 cut(s)	81
BstV1I	GCAGC	2 cut(s)	79, 80
BstV2I	GAAGAC	1 cut(s)	305
BsuRI	GGCC	1 cut(s)	35
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	2 cut(s)	43, 78
CciI	TCATGA	1 cut(s)	84
Cfr13I	GGNCC	1 cut(s)	33
CviAII	CATG	3 cut(s)	79, 85, 199
CviJI	RGCY	5 cut(s)	35, 49, 117, 173, 299
CviKI_1	RGCY	5 cut(s)	35, 49, 117, 173, 299
DdeI	CTNAG	1 cut(s)	161
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
Eam1104I	CTCTTC	2 cut(s)	182, 224
EarI	CTCTTC	2 cut(s)	182, 224
Eco130I	CCWWGG	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	250
ErhI	CCWWGG	1 cut(s)	250
FaeI	CATG	3 cut(s)	82, 88, 202
FaiI	YATR	5 cut(s)	80, 86, 188, 200, 302
FatI	CATG	3 cut(s)	78, 84, 198
FbaI	TGATCA	1 cut(s)	81
Fnu4HI	GCNGC	2 cut(s)	69, 93
Fsp4HI	GCNGC	2 cut(s)	69, 93
GluI	GCNGC	2 cut(s)	69, 93
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	3 cut(s)	82, 88, 202
HinfI	GANTC	4 cut(s)	10, 16, 22, 126
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	2 cut(s)	53, 214
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	3 cut(s)	9, 15, 21
Hpy188III	TCNNGA	2 cut(s)	85, 265
Hpy8I	GTNNAC	1 cut(s)	76
Hpy99I	CGWCG	1 cut(s)	126
HpyAV	CCTTC	1 cut(s)	58
HpyCH4V	TGCA	1 cut(s)	95
HpyF3I	CTNAG	1 cut(s)	161
Hsp92II	CATG	3 cut(s)	82, 88, 202
Ksp22I	TGATCA	1 cut(s)	81
Kzo9I	GATC	1 cut(s)	81
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	6 cut(s)	39, 49, 148, 166, 250, 277
Lsp1109I	GCAGC	2 cut(s)	79, 80
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MboII	GAAGA	4 cut(s)	169, 211, 274, 305
MluCI	AATT	2 cut(s)	167, 324
MlyI	GAGTC	3 cut(s)	4, 10, 16
MmeI	TCCRAC	3 cut(s)	32, 38, 44
MnlI	CCTC	2 cut(s)	15, 128
MseI	TTAA	1 cut(s)	323
MslI	CAYNNNNRTG	2 cut(s)	83, 197
MspI	CCGG	1 cut(s)	26
NdeII	GATC	1 cut(s)	81
NlaIII	CATG	3 cut(s)	82, 88, 202
NlaIV	GGNNCC	1 cut(s)	135
NmuCI	GTSAC	1 cut(s)	103
NspV	TTCGAA	1 cut(s)	143
PagI	TCATGA	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	126
PkrI	GCNGC	2 cut(s)	70, 94
PleI	GAGTC	3 cut(s)	4, 10, 16
PpsI	GAGTC	3 cut(s)	4, 10, 16
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	1 cut(s)	33
RseI	CAYNNNNRTG	2 cut(s)	83, 197
SaqAI	TTAA	1 cut(s)	323
SatI	GCNGC	2 cut(s)	69, 93
Sau3AI	GATC	1 cut(s)	81
Sau96I	GGNCC	1 cut(s)	33
SchI	GAGTC	3 cut(s)	4, 10, 16
SetI	ASST	3 cut(s)	51, 227, 301
SfuI	TTCGAA	1 cut(s)	143
SmiMI	CAYNNNNRTG	2 cut(s)	83, 197
Sse9I	AATT	2 cut(s)	167, 324
StyI	CCWWGG	1 cut(s)	250
TaqI	TCGA	2 cut(s)	124, 143
TasI	AATT	2 cut(s)	167, 324
TfiI	GAWTC	1 cut(s)	126
Tru1I	TTAA	1 cut(s)	323
Tru9I	TTAA	1 cut(s)	323
TscAI	CASTG	2 cut(s)	43, 78
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	2 cut(s)	68, 92
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	1 cut(s)	175
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	2 cut(s)	43, 78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.