Rroxscaffold_2G00121620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0006965
Physical Location & Seq
Forward (+)
54290980 .. 54292215
1236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00121620.1

Sequence Viewer

Length: 696 bp
ATGGGTCGTGCTGCTTGTCCCGAGAGTTCTAGGGCCGGAGAGGATGTCGCTGCTCTTAAAGGCGGGGAGGAGAGGTTGGCGAGCAATAGTGCGCTAGCGGCTCCGGCGAAAGGGTGGGAGAGGCTGGCGGGGAAGAGGTTGAGTCGGTATGGGTTCTTGCGACGGCATAGCGGTCGACTAAGAGGGAGGCCCGATGACCGTAGCCCGCCCGTCAAACCGTGTGAAGCGGGTGTTTCGCCCGCCGGGTGTAGTGAAGGCGCGACCGCCCGCCGAAGGATGAGAGAGAGTCGTTCTGCCCGGCGGGCACGCCGCCGTGCACGAGGGCAATCTTCCGCCGGGGGCGGTTGCGATGGCGGCGCTCAACTCACTATGGCTCTTGTCCGTTGCGGAGGTGTTGCACTTCTACGAGCCGGTTTCGTTGTTTTGAGGCTAACCCGGTGTTTTCATTCGGATTCGCCACGGGGTAACAAGGCTAAACGTGAGGCATTTGCGAAAGTCGAAAGTCATGGACCACGCCGAGATCAACGACTTTACGGAGAGCATGTATGCCTCGGGGCCTGCTCGGCATACGATAGTGGACACGGAGACAACGGCGCCGAGTCGATGCGAGATGCTCGTGGTGCTGCCTATGCCTCATCACTCTCACCTTGGCCCCGATGGCTCCCTCGAGGTGCGAGGTGGGAGCGCGGCGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

231

Amino Acids

24.77

Weight (kDa)

11.06

Isoelectric Point (pI)

71.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 666
AccB1I GGYRCC 2 cut(s) 593, 689
AccI GTMKAC 1 cut(s) 175
AccII CGCG 2 cut(s) 260, 687
AcyI GRCGYC 2 cut(s) 594, 690
AfiI CCNNNNNNNGG 2 cut(s) 110, 273
Alw21I GWGCWC 1 cut(s) 319
Alw26I GTCTC 1 cut(s) 579
Alw44I GTGCAC 1 cut(s) 315
Ama87I CYCGRG 3 cut(s) 20, 551, 666
AoxI GGCC 4 cut(s) 33, 188, 555, 650
ApaLI GTGCAC 1 cut(s) 315
ApeKI GCWGC 3 cut(s) 11, 50, 623
AspLEI GCGC 6 cut(s) 94, 260, 359, 596, 687, 692
AspS9I GGNCC 5 cut(s) 33, 189, 509, 555, 651
AsuC2I CCSGG 4 cut(s) 244, 298, 337, 436
AsuHPI GGTGA 1 cut(s) 636
AsuNHI GCTAGC 1 cut(s) 94
AvaI CYCGRG 3 cut(s) 20, 551, 666
AvaII GGWCC 1 cut(s) 509
BaeGI GKGCMC 2 cut(s) 307, 319
BanI GGYRCC 2 cut(s) 593, 689
BauI CACGAG 2 cut(s) 318, 615
Bbv12I GWGCWC 1 cut(s) 319
BbvI GCAGC 2 cut(s) 37, 610
BccI CCATC 2 cut(s) 344, 651
BceAI ACGGC 3 cut(s) 179, 297, 607
BcgI CGANNNNNNTGC 2 cut(s) 155, 189
BcnI CCSGG 4 cut(s) 244, 298, 337, 436
BcoDI GTCTC 1 cut(s) 579
BfaI CTAG 3 cut(s) 30, 95, 694
BfoI RGCGCY 3 cut(s) 360, 597, 693
BglI GCCNNNNNGGC 3 cut(s) 302, 563, 658
BisI GCNGC 7 cut(s) 12, 51, 99, 310, 355, 624, 688
BlsI GCNGC 7 cut(s) 13, 52, 100, 311, 356, 625, 689
Bme1390I CCNGG 4 cut(s) 244, 298, 337, 436
Bme18I GGWCC 1 cut(s) 509
BmeT110I CYCGRG 3 cut(s) 20, 551, 666
BmgT120I GGNCC 5 cut(s) 33, 189, 509, 555, 651
BmiI GGNNCC 6 cut(s) 102, 556, 595, 653, 662, 691
BmrFI CCNGG 4 cut(s) 244, 298, 337, 436
BmsI GCATC 2 cut(s) 594, 601
BmtI GCTAGC 1 cut(s) 98
BpuMI CCSGG 4 cut(s) 244, 298, 337, 436
BsaHI GRCGYC 2 cut(s) 594, 690
BsaJI CCNNGG 4 cut(s) 336, 458, 550, 647
BsaXI ACNNNNNCTCC 6 cut(s) 30, 59, 60, 89, 528, 558
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 273
Bse118I RCCGGY 1 cut(s) 410
BseDI CCNNGG 4 cut(s) 336, 458, 550, 647
BseGI GGATG 2 cut(s) 49, 282
BseLI CCNNNNNNNGG 2 cut(s) 110, 273
BseRI GAGGAG 1 cut(s) 83
BseSI GKGCMC 2 cut(s) 307, 319
BseXI GCAGC 2 cut(s) 37, 610
Bsh1236I CGCG 2 cut(s) 260, 687
Bsh1285I CGRYCG 2 cut(s) 175, 264
BshFI GGCC 4 cut(s) 35, 190, 557, 652
BshNI GGYRCC 2 cut(s) 593, 689
BsiEI CGRYCG 2 cut(s) 175, 264
BsiHKAI GWGCWC 1 cut(s) 319
BsiHKCI CYCGRG 3 cut(s) 20, 551, 666
BsiSI CCGG 7 cut(s) 36, 104, 243, 298, 336, 411, 436
BslFI GGGAC 1 cut(s) 3
BslI CCNNNNNNNGG 2 cut(s) 110, 273
BsmAI GTCTC 1 cut(s) 579
BsmFI GGGAC 1 cut(s) 3
BsnI GGCC 4 cut(s) 35, 190, 557, 652
BsoBI CYCGRG 3 cut(s) 20, 551, 666
Bsp1286I GDGCHC 2 cut(s) 307, 319
Bsp143I GATC 1 cut(s) 520
BspANI GGCC 4 cut(s) 35, 190, 557, 652
BspFNI CGCG 2 cut(s) 260, 687
BspLI GGNNCC 6 cut(s) 102, 556, 595, 653, 662, 691
BspOI GCTAGC 1 cut(s) 98
BspT107I GGYRCC 2 cut(s) 593, 689
BsrFI RCCGGY 1 cut(s) 410
BssAI RCCGGY 1 cut(s) 410
BssECI CCNNGG 4 cut(s) 336, 458, 550, 647
BssMI GATC 1 cut(s) 520
BssNI GRCGYC 2 cut(s) 594, 690
BssSI CACGAG 2 cut(s) 318, 615
BssT1I CCWWGG 1 cut(s) 647
Bst2BI CACGAG 2 cut(s) 318, 615
Bst4CI ACNGT 2 cut(s) 200, 219
Bst6I CTCTTC 1 cut(s) 128
BstACI GRCGYC 2 cut(s) 594, 690
BstC8I GCNNGC 9 cut(s) 82, 96, 126, 206, 240, 268, 303, 307, 559
BstDEI CTNAG 1 cut(s) 179
BstDSI CCRYGG 1 cut(s) 458
BstF5I GGATG 2 cut(s) 49, 282
BstFNI CGCG 2 cut(s) 260, 687
BstH2I RGCGCY 3 cut(s) 360, 597, 693
BstHHI GCGC 6 cut(s) 94, 260, 359, 596, 687, 692
BstKTI GATC 1 cut(s) 523
BstMAI GTCTC 1 cut(s) 579
BstMBI GATC 1 cut(s) 520
BstMCI CGRYCG 2 cut(s) 175, 264
BstMWI GCNNNNNNNGC 8 cut(s) 98, 104, 302, 354, 563, 620, 629, 658
BstNSI RCATGY 1 cut(s) 545
BstSCI CCNGG 4 cut(s) 242, 296, 335, 434
BstSLI GKGCMC 2 cut(s) 307, 319
BstUI CGCG 2 cut(s) 260, 687
BstV1I GCAGC 2 cut(s) 37, 610
BsuRI GGCC 4 cut(s) 35, 190, 557, 652
BtgI CCRYGG 1 cut(s) 458
BtgZI GCGATG 1 cut(s) 363
BtsCI GGATG 2 cut(s) 49, 282
Cac8I GCNNGC 9 cut(s) 82, 96, 126, 206, 240, 268, 303, 307, 559
CfoI GCGC 6 cut(s) 94, 260, 359, 596, 687, 692
Cfr10I RCCGGY 1 cut(s) 410
Cfr13I GGNCC 5 cut(s) 33, 189, 509, 555, 651
CviAII CATG 2 cut(s) 506, 542
DdeI CTNAG 1 cut(s) 179
DinI GGCGCC 2 cut(s) 595, 691
DpnI GATC 1 cut(s) 522
DpnII GATC 1 cut(s) 520
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
EciI GGCGGA 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 647
Eco47I GGWCC 1 cut(s) 509
Eco88I CYCGRG 3 cut(s) 20, 551, 666
EcoO109I RGGNCCY 1 cut(s) 555
EcoT14I CCWWGG 1 cut(s) 647
EgeI GGCGCC 2 cut(s) 595, 691
EheI GGCGCC 2 cut(s) 595, 691
ErhI CCWWGG 1 cut(s) 647
FaeI CATG 2 cut(s) 509, 545
FaiI YATR 8 cut(s) 150, 168, 371, 507, 543, 547, 568, 630
FaqI GGGAC 1 cut(s) 3
FatI CATG 2 cut(s) 505, 541
FauI CCCGC 7 cut(s) 56, 121, 213, 220, 247, 275, 294
FblI GTMKAC 1 cut(s) 175
Fnu4HI GCNGC 7 cut(s) 12, 51, 99, 310, 355, 624, 688
FokI GGATG 2 cut(s) 56, 289
Fsp4HI GCNGC 7 cut(s) 12, 51, 99, 310, 355, 624, 688
FspBI CTAG 3 cut(s) 30, 95, 694
GlaI GCGC 6 cut(s) 93, 259, 358, 595, 686, 691
GluI GCNGC 7 cut(s) 12, 51, 99, 310, 355, 624, 688
HaeII RGCGCY 3 cut(s) 360, 597, 693
HaeIII GGCC 4 cut(s) 35, 190, 557, 652
HapII CCGG 7 cut(s) 36, 104, 243, 298, 336, 411, 436
HhaI GCGC 6 cut(s) 94, 260, 359, 596, 687, 692
Hin1I GRCGYC 2 cut(s) 594, 690
Hin1II CATG 2 cut(s) 509, 545
Hin6I GCGC 6 cut(s) 92, 258, 357, 594, 685, 690
HinP1I GCGC 6 cut(s) 92, 258, 357, 594, 685, 690
HincII GTYRAC 1 cut(s) 176
HindII GTYRAC 1 cut(s) 176
HinfI GANTC 4 cut(s) 142, 286, 452, 599
HpaII CCGG 7 cut(s) 36, 104, 243, 298, 336, 411, 436
HphI GGTGA 1 cut(s) 636
Hpy166II GTNNAC 3 cut(s) 176, 317, 578
Hpy188I TCNGA 1 cut(s) 451
Hpy188III TCNNGA 1 cut(s) 20
Hpy8I GTNNAC 3 cut(s) 176, 317, 578
Hpy99I CGWCG 1 cut(s) 165
HpyAV CCTTC 2 cut(s) 248, 267
HpyCH4III ACNGT 2 cut(s) 200, 219
HpyCH4IV ACGT 1 cut(s) 478
HpyCH4V TGCA 2 cut(s) 317, 398
HpyF10VI GCNNNNNNNGC 8 cut(s) 98, 104, 302, 354, 563, 620, 629, 658
HpyF3I CTNAG 1 cut(s) 179
HpySE526I ACGT 1 cut(s) 478
Hsp92I GRCGYC 2 cut(s) 594, 690
Hsp92II CATG 2 cut(s) 509, 545
HspAI GCGC 6 cut(s) 92, 258, 357, 594, 685, 690
KasI GGCGCC 2 cut(s) 593, 689
Kzo9I GATC 1 cut(s) 520
LmnI GCTCC 3 cut(s) 106, 666, 682
LpnPI CCDG 9 cut(s) 49, 110, 117, 256, 311, 349, 424, 449, 571
Lsp1109I GCAGC 2 cut(s) 37, 610
LweI GCATC 2 cut(s) 594, 601
MaeI CTAG 3 cut(s) 30, 95, 694
MaeII ACGT 1 cut(s) 478
MaeIII GTNAC 1 cut(s) 464
MalI GATC 1 cut(s) 522
MboI GATC 1 cut(s) 520
MboII GAAGA 2 cut(s) 145, 321
MhlI GDGCHC 2 cut(s) 307, 319
Mly113I GGCGCC 2 cut(s) 594, 690
MlyI GAGTC 3 cut(s) 151, 295, 608
MseI TTAA 1 cut(s) 57
MspI CCGG 7 cut(s) 36, 104, 243, 298, 336, 411, 436
MspR9I CCNGG 4 cut(s) 244, 298, 337, 436
MteI GCGCNGCGC 1 cut(s) 688
MvnI CGCG 2 cut(s) 260, 687
MwoI GCNNNNNNNGC 8 cut(s) 98, 104, 302, 354, 563, 620, 629, 658
NarI GGCGCC 2 cut(s) 594, 690
NciI CCSGG 4 cut(s) 244, 298, 337, 436
NdeII GATC 1 cut(s) 520
NheI GCTAGC 1 cut(s) 94
NlaIII CATG 2 cut(s) 509, 545
NlaIV GGNNCC 6 cut(s) 102, 556, 595, 653, 662, 691
NmeAIII GCCGAG 3 cut(s) 542, 542, 622
NspI RCATGY 1 cut(s) 545
PaeR7I CTCGAG 1 cut(s) 666
PfeI GAWTC 1 cut(s) 452
PkrI GCNGC 7 cut(s) 13, 52, 100, 311, 356, 625, 689
PleI GAGTC 3 cut(s) 150, 294, 607
PluTI GGCGCC 2 cut(s) 597, 693
PpsI GAGTC 3 cut(s) 150, 294, 607
PspN4I GGNNCC 6 cut(s) 102, 556, 595, 653, 662, 691
PspPI GGNCC 5 cut(s) 33, 189, 509, 555, 651
PspXI VCTCGAGB 1 cut(s) 666
SalI GTCGAC 1 cut(s) 174
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 7 cut(s) 12, 51, 99, 310, 355, 624, 688
Sau3AI GATC 1 cut(s) 520
Sau96I GGNCC 5 cut(s) 33, 189, 509, 555, 651
SchI GAGTC 3 cut(s) 151, 295, 608
ScrFI CCNGG 4 cut(s) 244, 298, 337, 436
SduI GDGCHC 2 cut(s) 307, 319
SetI ASST 7 cut(s) 77, 140, 394, 481, 649, 673, 680
SfaNI GCATC 2 cut(s) 594, 601
SfoI GGCGCC 2 cut(s) 595, 691
Sfr274I CTCGAG 1 cut(s) 666
SinI GGWCC 1 cut(s) 509
SlaI CTCGAG 1 cut(s) 666
SmlI CTYRAG 1 cut(s) 666
SmoI CTYRAG 1 cut(s) 666
SspDI GGCGCC 2 cut(s) 593, 689
SspMI CTAG 3 cut(s) 30, 95, 694
StyD4I CCNGG 4 cut(s) 242, 296, 335, 434
StyI CCWWGG 1 cut(s) 647
TaaI ACNGT 2 cut(s) 200, 219
TaiI ACGT 1 cut(s) 481
TaqI TCGA 4 cut(s) 175, 498, 602, 667
TauI GCSGC 4 cut(s) 101, 312, 357, 690
TfiI GAWTC 1 cut(s) 452
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TseI GCWGC 3 cut(s) 11, 50, 623
TspDTI ATGAA 1 cut(s) 434
TspGWI ACGGA 3 cut(s) 371, 549, 597
VneI GTGCAC 1 cut(s) 315
VpaK11BI GGWCC 1 cut(s) 509
XceI RCATGY 1 cut(s) 545
XhoI CTCGAG 1 cut(s) 666
XmiI GTMKAC 1 cut(s) 175
XspI CTAG 3 cut(s) 30, 95, 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.