Rroxscaffold_5G00364780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0006965
Physical Location & Seq
Reverse (-)
45962000 .. 45967012
5013 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00364780.1

Sequence Viewer

Length: 378 bp
ATGGTCGACAACGGTTTTAGACCAGTGACCGAGCCGTTGTCTGTTGAAAATTCAGACAACGGTGGAACACGATTGTTTGAGAAACACACGGACAACGGTATGTGTTATAAATATTGTGTGATAGCTCGGCAGATGTCAAGCGCAGCTGCGCAGCACCGAGGCACCGTCTTCGACAATAGTGCCGATTTTCAAGCTGTTGACCGATATGCATCGGTTCCCGGTTTGTGGAGCTTCGATACCGTCTTGGCGCGGCGCGTCGGCGGTGACCTAGGGGCGAGCCGGGGCTCGGGCGGCAGCTGTCCGGTGGTGATTGTGTATGTCATACAGTTGGCGGTAGTTGATATCGCTGGTGTTGATATGAACGTGGCCTATTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.37

Weight (kDa)

5.15

Isoelectric Point (pI)

25.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 108
Acc16I TGCGCA 1 cut(s) 150
AccB1I GGYRCC 1 cut(s) 161
AccI GTMKAC 1 cut(s) 6
AccII CGCG 2 cut(s) 250, 255
AciI CCGC 4 cut(s) 250, 261, 291, 332
AcsI RAATTY 1 cut(s) 49
AfiI CCNNNNNNNGG 2 cut(s) 225, 286
AgsI TTSAA 2 cut(s) 47, 191
AluBI AGCT 5 cut(s) 125, 146, 194, 231, 297
AluI AGCT 5 cut(s) 125, 146, 194, 231, 297
Ama87I CYCGRG 1 cut(s) 286
AoxI GGCC 1 cut(s) 366
ApeKI GCWGC 4 cut(s) 143, 146, 151, 294
ApoI RAATTY 1 cut(s) 49
AspA2I CCTAGG 1 cut(s) 268
AspLEI GCGC 4 cut(s) 143, 151, 250, 255
AsuC2I CCSGG 2 cut(s) 219, 281
AsuHPI GGTGA 2 cut(s) 275, 319
AvaI CYCGRG 1 cut(s) 286
AvrII CCTAGG 1 cut(s) 268
BanI GGYRCC 1 cut(s) 161
BanII GRGCYC 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 160
BbvI GCAGC 4 cut(s) 133, 155, 163, 306
BceAI ACGGC 1 cut(s) 19
BcgI CGANNNNNNTGC 4 cut(s) 151, 161, 185, 195
BcnI CCSGG 2 cut(s) 219, 281
BfaI CTAG 1 cut(s) 269
BisI GCNGC 6 cut(s) 144, 147, 152, 251, 292, 295
BlnI CCTAGG 1 cut(s) 268
BlsI GCNGC 6 cut(s) 145, 148, 153, 252, 293, 296
Bme1390I CCNGG 2 cut(s) 219, 281
BmeT110I CYCGRG 1 cut(s) 286
BmiI GGNNCC 2 cut(s) 163, 216
BmrFI CCNGG 2 cut(s) 219, 281
BmsI GCATC 1 cut(s) 218
BpiI GAAGAC 1 cut(s) 160
BpuMI CCSGG 2 cut(s) 219, 281
BsaBI GATNNNNATC 1 cut(s) 208
BsaJI CCNNGG 3 cut(s) 157, 268, 280
BsaWI WCCGGW 1 cut(s) 301
Bsc4I CCNNNNNNNGG 2 cut(s) 225, 286
Bse1I ACTGG 1 cut(s) 23
Bse8I GATNNNNATC 1 cut(s) 208
BseDI CCNNGG 3 cut(s) 157, 268, 280
BseJI GATNNNNATC 1 cut(s) 208
BseLI CCNNNNNNNGG 2 cut(s) 225, 286
BseNI ACTGG 1 cut(s) 23
BseXI GCAGC 4 cut(s) 133, 155, 163, 306
Bsh1236I CGCG 2 cut(s) 250, 255
BshFI GGCC 1 cut(s) 368
BshNI GGYRCC 1 cut(s) 161
BsiHKCI CYCGRG 1 cut(s) 286
BsiSI CCGG 3 cut(s) 219, 280, 302
BslI CCNNNNNNNGG 2 cut(s) 225, 286
BsnI GGCC 1 cut(s) 368
BsoBI CYCGRG 1 cut(s) 286
Bsp1286I GDGCHC 1 cut(s) 287
BspACI CCGC 4 cut(s) 250, 261, 291, 332
BspANI GGCC 1 cut(s) 368
BspFNI CGCG 2 cut(s) 250, 255
BspLI GGNNCC 2 cut(s) 163, 216
BspT107I GGYRCC 1 cut(s) 161
BsrI ACTGG 1 cut(s) 23
BssECI CCNNGG 3 cut(s) 157, 268, 280
BssT1I CCWWGG 1 cut(s) 268
Bst4CI ACNGT 6 cut(s) 14, 62, 98, 166, 241, 327
BstC8I GCNNGC 1 cut(s) 277
BstEII GGTNACC 1 cut(s) 263
BstFNI CGCG 2 cut(s) 250, 255
BstHHI GCGC 4 cut(s) 143, 151, 250, 255
BstMWI GCNNNNNNNGC 1 cut(s) 291
BstPI GGTNACC 1 cut(s) 263
BstSCI CCNGG 2 cut(s) 217, 279
BstUI CGCG 2 cut(s) 250, 255
BstV1I GCAGC 4 cut(s) 133, 155, 163, 306
BstV2I GAAGAC 1 cut(s) 160
BsuRI GGCC 1 cut(s) 368
BtsIMutI CAGTG 1 cut(s) 30
Cac8I GCNNGC 1 cut(s) 277
CfoI GCGC 4 cut(s) 143, 151, 250, 255
CseI GACGC 1 cut(s) 244
CviJI RGCY 9 cut(s) 34, 125, 146, 194, 231, 279, 285, 297, 368
CviKI_1 RGCY 9 cut(s) 34, 125, 146, 194, 231, 279, 285, 297, 368
Eco130I CCWWGG 1 cut(s) 268
Eco24I GRGCYC 1 cut(s) 287
Eco32I GATATC 1 cut(s) 343
Eco88I CYCGRG 1 cut(s) 286
Eco91I GGTNACC 1 cut(s) 263
EcoO65I GGTNACC 1 cut(s) 263
EcoRV GATATC 1 cut(s) 343
EcoT14I CCWWGG 1 cut(s) 268
EcoT22I ATGCAT 1 cut(s) 211
EcoT38I GRGCYC 1 cut(s) 287
ErhI CCWWGG 1 cut(s) 268
FaiI YATR 7 cut(s) 101, 108, 207, 318, 323, 359, 376
FblI GTMKAC 1 cut(s) 6
Fnu4HI GCNGC 6 cut(s) 144, 147, 152, 251, 292, 295
FriOI GRGCYC 1 cut(s) 287
Fsp4HI GCNGC 6 cut(s) 144, 147, 152, 251, 292, 295
FspBI CTAG 1 cut(s) 269
FspI TGCGCA 1 cut(s) 150
GlaI GCGC 4 cut(s) 142, 150, 249, 254
GluI GCNGC 6 cut(s) 144, 147, 152, 251, 292, 295
HaeIII GGCC 1 cut(s) 368
HapII CCGG 3 cut(s) 219, 280, 302
HgaI GACGC 1 cut(s) 244
HhaI GCGC 4 cut(s) 143, 151, 250, 255
Hin6I GCGC 4 cut(s) 141, 149, 248, 253
HinP1I GCGC 4 cut(s) 141, 149, 248, 253
HincII GTYRAC 2 cut(s) 7, 199
HindII GTYRAC 2 cut(s) 7, 199
HpaII CCGG 3 cut(s) 219, 280, 302
HphI GGTGA 2 cut(s) 275, 319
Hpy166II GTNNAC 2 cut(s) 7, 199
Hpy188I TCNGA 1 cut(s) 55
Hpy8I GTNNAC 2 cut(s) 7, 199
Hpy99I CGWCG 1 cut(s) 260
HpyCH4III ACNGT 6 cut(s) 14, 62, 98, 166, 241, 327
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 291
HpySE526I ACGT 1 cut(s) 363
HspAI GCGC 4 cut(s) 141, 149, 248, 253
LmnI GCTCC 1 cut(s) 228
LpnPI CCDG 5 cut(s) 36, 232, 293, 315, 333
Lsp1109I GCAGC 4 cut(s) 133, 155, 163, 306
LweI GCATC 1 cut(s) 218
MaeI CTAG 1 cut(s) 269
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 2 cut(s) 25, 263
MboII GAAGA 1 cut(s) 160
MhlI GDGCHC 1 cut(s) 287
MluCI AATT 1 cut(s) 49
MnlI CCTC 1 cut(s) 152
Mph1103I ATGCAT 1 cut(s) 211
MspA1I CMGCKG 2 cut(s) 146, 297
MspI CCGG 3 cut(s) 219, 280, 302
MspR9I CCNGG 2 cut(s) 219, 281
MteI GCGCNGCGC 1 cut(s) 251
MvnI CGCG 2 cut(s) 250, 255
MwoI GCNNNNNNNGC 1 cut(s) 291
NciI CCSGG 2 cut(s) 219, 281
NlaIV GGNNCC 2 cut(s) 163, 216
NmeAIII GCCGAG 1 cut(s) 106
NmuCI GTSAC 2 cut(s) 25, 263
NsbI TGCGCA 1 cut(s) 150
NsiI ATGCAT 1 cut(s) 211
PkrI GCNGC 6 cut(s) 145, 148, 153, 252, 293, 296
PsiI TTATAA 1 cut(s) 108
PspEI GGTNACC 1 cut(s) 263
PspN4I GGNNCC 2 cut(s) 163, 216
PvuII CAGCTG 2 cut(s) 146, 297
SalI GTCGAC 1 cut(s) 5
SatI GCNGC 6 cut(s) 144, 147, 152, 251, 292, 295
ScrFI CCNGG 2 cut(s) 219, 281
SduI GDGCHC 1 cut(s) 287
SetI ASST 7 cut(s) 127, 148, 196, 233, 270, 299, 366
SfaNI GCATC 1 cut(s) 218
Sse9I AATT 1 cut(s) 49
SsiI CCGC 4 cut(s) 250, 261, 291, 332
SspI AATATT 1 cut(s) 113
SspMI CTAG 1 cut(s) 269
StyD4I CCNGG 2 cut(s) 217, 279
StyI CCWWGG 1 cut(s) 268
TaaI ACNGT 6 cut(s) 14, 62, 98, 166, 241, 327
TaiI ACGT 1 cut(s) 366
TaqI TCGA 3 cut(s) 6, 171, 234
TaqII GACCGA 2 cut(s) 44, 216
TasI AATT 1 cut(s) 49
TauI GCSGC 2 cut(s) 253, 294
TscAI CASTG 1 cut(s) 30
TseFI GTSAC 2 cut(s) 25, 263
TseI GCWGC 4 cut(s) 143, 146, 151, 294
Tsp45I GTSAC 2 cut(s) 25, 263
TspDTI ATGAA 2 cut(s) 363, 374
TspGWI ACGGA 1 cut(s) 104
TspRI CASTG 1 cut(s) 30
XapI RAATTY 1 cut(s) 49
XmaJI CCTAGG 1 cut(s) 268
XmiI GTMKAC 1 cut(s) 6
XspI CTAG 1 cut(s) 269
Zsp2I ATGCAT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.