Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006965

Physical Location & Seq

Genomic Coordinates Forward (+)

17951335 .. 17959336

Gene Structure 8002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00298100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGTGAAGTATAGCATAGCATTCATGCGTTCGTCGTGGAGACGTATCCCGTATCATTTATTCATTCATTCATTCATTCATTTGATCGCAATCGGCAGCGCAAGAGTTCGTGAGGGACAACATTGTTCGTATCGGGGAACCGACCGTGAGCGATATCTCATTGTTATTCATTCGAGCATTGGAGAGAAGAGAGAACCTTTTATAGGTGAAGAAGGAGTTGATCTTCTTCATGTTTTCGATGTGGGACGATATGCTTCGGTCCCCGGCTTTTGGAGCTTCGATGCTTTGTCTTTGGGTGGAGCGTGGCGGCGCTTTAGCGGCTATCTAAAGGCAAGCCGGGGCTCAAGCGGTAGCTCGCTTGGCCGTGCTCCCCGGTGTTGGGCTCTTTTGCGAGGTATAGGGAGAAGTTTCGCTAGCGGAGTTGTGCTTAGCGACGCGTCTCGCCCGCAAGATGGAAGGGGAGAAGTTTCGCTAGTGGAGTTGCGCCCAACGGAGACTATCTACGTTGTCAAATGGAAAGGGAGAAGTTCCGCTAGCGGAGTTGCACTTGGCGGAGACTATCTCCCTTGCAAGATGGAAAGGAGAAGTTCCGCTAGCGGCGTTGCGCTTAGCGGAGACTATCTAGCTTGCCGGATGGAAAGGGAGAAGTTCCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

218

Amino Acids

24.29

Weight (kDa)

10.01

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006965)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0146011
rosa_laevigata	RLG00000010267
rosa_multiflora	Rmu_sc0022686.1_g000002
rosa_roxburghii	Rroxscaffold_1G00027380 Rroxscaffold_2G00110940 Rroxscaffold_2G00121620 Rroxscaffold_2G00143750 Rroxscaffold_3G00238040 Rroxscaffold_4G00298100 Rroxscaffold_4G00307350 Rroxscaffold_5G00337660 Rroxscaffold_5G00346680 Rroxscaffold_5G00364780 Rroxscaffold_5G00366680 Rroxscaffold_6G00406170 Rroxscaffold_7G00189440
rosa_rugosa	Rorug01G0433400 Rorug03G0172600 Rorug03G0172700 Rorug03G0368000.1
rosa_samantha	Rh1DG097800 Rh2BG125800 Rh2DG127800 Rh3BG286500 Rh5BG445000 Rh7CG204100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	437
AcoI	YGGCCR	1 cut(s)	361
AfiI	CCNNNNNNNGG	5 cut(s)	203, 270, 378, 379, 452
AflIII	ACRYGT	1 cut(s)	435
AluBI	AGCT	3 cut(s)	276, 354, 626
AluI	AGCT	3 cut(s)	276, 354, 626
Alw21I	GWGCWC	1 cut(s)	370
Alw26I	GTCTC	5 cut(s)	34, 444, 488, 549, 609
AoxI	GGCC	1 cut(s)	361
ApeKI	GCWGC	1 cut(s)	96
AspLEI	GCGC	4 cut(s)	101, 312, 486, 607
AspS9I	GGNCC	1 cut(s)	259
AsuC2I	CCSGG	3 cut(s)	264, 338, 373
AsuHPI	GGTGA	2 cut(s)	16, 218
AsuNHI	GCTAGC	3 cut(s)	413, 533, 593
AvaII	GGWCC	1 cut(s)	259
BanII	GRGCYC	2 cut(s)	344, 385
Bbv12I	GWGCWC	1 cut(s)	370
BbvI	GCAGC	1 cut(s)	108
BccI	CCATC	3 cut(s)	446, 568, 628
BceAI	ACGGC	1 cut(s)	348
BciVI	GTATCC	1 cut(s)	56
BcnI	CCSGG	3 cut(s)	264, 338, 373
BcoDI	GTCTC	5 cut(s)	34, 444, 488, 549, 609
BfaI	CTAG	6 cut(s)	414, 473, 534, 594, 623, 655
BfoI	RGCGCY	1 cut(s)	313
BfuI	GTATCC	1 cut(s)	56
BisI	GCNGC	4 cut(s)	97, 308, 319, 598
BlpI	GCTNAGC	2 cut(s)	428, 608
BlsI	GCNGC	4 cut(s)	98, 309, 320, 599
Bme1390I	CCNGG	3 cut(s)	264, 338, 373
Bme18I	GGWCC	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	259
BmiI	GGNNCC	2 cut(s)	139, 261
BmrFI	CCNGG	3 cut(s)	264, 338, 373
BmsI	GCATC	1 cut(s)	271
BmtI	GCTAGC	3 cut(s)	417, 537, 597
BplI	GAGNNNNNCTC	2 cut(s)	546, 578
Bpu1102I	GCTNAGC	2 cut(s)	428, 608
BpuEI	CTTGAG	1 cut(s)	328
BpuMI	CCSGG	3 cut(s)	264, 338, 373
BsaBI	GATNNNNATC	1 cut(s)	89
BsaJI	CCNNGG	3 cut(s)	262, 337, 371
Bsc4I	CCNNNNNNNGG	5 cut(s)	203, 270, 378, 379, 452
Bse8I	GATNNNNATC	1 cut(s)	89
BseDI	CCNNGG	3 cut(s)	262, 337, 371
BseGI	GGATG	1 cut(s)	639
BseJI	GATNNNNATC	1 cut(s)	89
BseLI	CCNNNNNNNGG	5 cut(s)	203, 270, 378, 379, 452
BseXI	GCAGC	1 cut(s)	108
Bsh1236I	CGCG	1 cut(s)	437
Bsh1285I	CGRYCG	1 cut(s)	145
BshFI	GGCC	1 cut(s)	363
BsiEI	CGRYCG	1 cut(s)	145
BsiHKAI	GWGCWC	1 cut(s)	370
BsiSI	CCGG	4 cut(s)	264, 337, 373, 631
BslFI	GGGAC	3 cut(s)	129, 245, 258
BslI	CCNNNNNNNGG	5 cut(s)	203, 270, 378, 379, 452
BsmAI	GTCTC	5 cut(s)	34, 444, 488, 549, 609
BsmBI	CGTCTC	2 cut(s)	34, 444
BsmFI	GGGAC	3 cut(s)	129, 245, 258
BsmI	GAATGC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	363
Bsp1286I	GDGCHC	3 cut(s)	344, 370, 385
Bsp143I	GATC	2 cut(s)	84, 220
Bsp1720I	GCTNAGC	2 cut(s)	428, 608
BspANI	GGCC	1 cut(s)	363
BspFNI	CGCG	1 cut(s)	437
BspLI	GGNNCC	2 cut(s)	139, 261
BspOI	GCTAGC	3 cut(s)	417, 537, 597
BssECI	CCNNGG	3 cut(s)	262, 337, 371
BssMI	GATC	2 cut(s)	84, 220
Bst4CI	ACNGT	1 cut(s)	146
Bst6I	CTCTTC	1 cut(s)	182
BstC8I	GCNNGC	7 cut(s)	334, 356, 415, 446, 535, 595, 628
BstDEI	CTNAG	2 cut(s)	428, 608
BstENI	CCTNNNNNAGG	1 cut(s)	201
BstF5I	GGATG	1 cut(s)	639
BstFNI	CGCG	1 cut(s)	437
BstH2I	RGCGCY	1 cut(s)	313
BstHHI	GCGC	4 cut(s)	101, 312, 486, 607
BstKTI	GATC	2 cut(s)	87, 223
BstMAI	GTCTC	5 cut(s)	34, 444, 488, 549, 609
BstMBI	GATC	2 cut(s)	84, 220
BstMCI	CGRYCG	1 cut(s)	145
BstMWI	GCNNNNNNNGC	3 cut(s)	273, 318, 360
BstSCI	CCNGG	3 cut(s)	262, 336, 371
BstUI	CGCG	1 cut(s)	437
BstV1I	GCAGC	1 cut(s)	108
BsuI	GTATCC	1 cut(s)	56
BsuRI	GGCC	1 cut(s)	363
BtsCI	GGATG	1 cut(s)	639
Cac8I	GCNNGC	7 cut(s)	334, 356, 415, 446, 535, 595, 628
CfoI	GCGC	4 cut(s)	101, 312, 486, 607
Cfr13I	GGNCC	1 cut(s)	259
CseI	GACGC	2 cut(s)	426, 443
CviAII	CATG	2 cut(s)	25, 230
CviJI	RGCY	9 cut(s)	267, 276, 321, 336, 342, 354, 363, 383, 626
CviKI_1	RGCY	9 cut(s)	267, 276, 321, 336, 342, 354, 363, 383, 626
DdeI	CTNAG	2 cut(s)	428, 608
DpnI	GATC	2 cut(s)	86, 222
DpnII	GATC	2 cut(s)	84, 220
EaeI	YGGCCR	1 cut(s)	361
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
EciI	GGCGGA	1 cut(s)	567
Eco24I	GRGCYC	2 cut(s)	344, 385
Eco32I	GATATC	1 cut(s)	155
Eco47I	GGWCC	1 cut(s)	259
EcoNI	CCTNNNNNAGG	1 cut(s)	201
EcoRV	GATATC	1 cut(s)	155
EcoT38I	GRGCYC	2 cut(s)	344, 385
Esp3I	CGTCTC	2 cut(s)	34, 444
FaeI	CATG	2 cut(s)	28, 233
FaiI	YATR	7 cut(s)	12, 17, 26, 203, 231, 252, 398
FaqI	GGGAC	3 cut(s)	129, 245, 258
FatI	CATG	2 cut(s)	24, 229
FauI	CCCGC	1 cut(s)	453
Fnu4HI	GCNGC	4 cut(s)	97, 308, 319, 598
FokI	GGATG	1 cut(s)	646
FriOI	GRGCYC	2 cut(s)	344, 385
Fsp4HI	GCNGC	4 cut(s)	97, 308, 319, 598
FspBI	CTAG	6 cut(s)	414, 473, 534, 594, 623, 655
GlaI	GCGC	4 cut(s)	100, 311, 485, 606
GluI	GCNGC	4 cut(s)	97, 308, 319, 598
HaeII	RGCGCY	1 cut(s)	313
HaeIII	GGCC	1 cut(s)	363
HapII	CCGG	4 cut(s)	264, 337, 373, 631
HgaI	GACGC	2 cut(s)	426, 443
HhaI	GCGC	4 cut(s)	101, 312, 486, 607
Hin1II	CATG	2 cut(s)	28, 233
Hin6I	GCGC	4 cut(s)	99, 310, 484, 605
HinP1I	GCGC	4 cut(s)	99, 310, 484, 605
HpaII	CCGG	4 cut(s)	264, 337, 373, 631
HphI	GGTGA	2 cut(s)	16, 218
Hpy188III	TCNNGA	1 cut(s)	110
Hpy99I	CGWCG	2 cut(s)	37, 437
HpyAV	CCTTC	2 cut(s)	206, 450
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4IV	ACGT	2 cut(s)	43, 504
HpyCH4V	TGCA	2 cut(s)	545, 570
HpyF10VI	GCNNNNNNNGC	3 cut(s)	273, 318, 360
HpyF3I	CTNAG	2 cut(s)	428, 608
HpySE526I	ACGT	2 cut(s)	43, 504
Hsp92II	CATG	2 cut(s)	28, 233
HspAI	GCGC	4 cut(s)	99, 310, 484, 605
Kzo9I	GATC	2 cut(s)	84, 220
LmnI	GCTCC	3 cut(s)	273, 299, 373
LpnPI	CCDG	4 cut(s)	277, 350, 386, 644
Lsp1109I	GCAGC	1 cut(s)	108
LweI	GCATC	1 cut(s)	271
MaeI	CTAG	6 cut(s)	414, 473, 534, 594, 623, 655
MaeII	ACGT	2 cut(s)	43, 504
MalI	GATC	2 cut(s)	86, 222
MboI	GATC	2 cut(s)	84, 220
MboII	GAAGA	4 cut(s)	199, 215, 218, 221
MhlI	GDGCHC	3 cut(s)	344, 370, 385
MluI	ACGCGT	1 cut(s)	435
MnlI	CCTC	2 cut(s)	106, 386
MspI	CCGG	4 cut(s)	264, 337, 373, 631
MspR9I	CCNGG	3 cut(s)	264, 338, 373
Mva1269I	GAATGC	1 cut(s)	20
MvnI	CGCG	1 cut(s)	437
MwoI	GCNNNNNNNGC	3 cut(s)	273, 318, 360
NciI	CCSGG	3 cut(s)	264, 338, 373
NdeII	GATC	2 cut(s)	84, 220
NheI	GCTAGC	3 cut(s)	413, 533, 593
NlaIII	CATG	2 cut(s)	28, 233
NlaIV	GGNNCC	2 cut(s)	139, 261
PctI	GAATGC	1 cut(s)	20
PkrI	GCNGC	4 cut(s)	98, 309, 320, 599
PspN4I	GGNNCC	2 cut(s)	139, 261
PspPI	GGNCC	1 cut(s)	259
SatI	GCNGC	4 cut(s)	97, 308, 319, 598
Sau3AI	GATC	2 cut(s)	84, 220
Sau96I	GGNCC	1 cut(s)	259
ScrFI	CCNGG	3 cut(s)	264, 338, 373
SduI	GDGCHC	3 cut(s)	344, 370, 385
SetI	ASST	8 cut(s)	46, 199, 208, 278, 356, 397, 507, 628
SfaNI	GCATC	1 cut(s)	271
SinI	GGWCC	1 cut(s)	259
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
SspMI	CTAG	6 cut(s)	414, 473, 534, 594, 623, 655
StyD4I	CCNGG	3 cut(s)	262, 336, 371
TaaI	ACNGT	1 cut(s)	146
TaiI	ACGT	2 cut(s)	46, 507
TaqI	TCGA	3 cut(s)	173, 237, 279
TaqII	GACCGA	1 cut(s)	247
TauI	GCSGC	3 cut(s)	310, 321, 600
TseI	GCWGC	1 cut(s)	96
TspDTI	ATGAA	8 cut(s)	13, 52, 56, 60, 64, 68, 158, 218
TspGWI	ACGGA	1 cut(s)	506
VpaK11BI	GGWCC	1 cut(s)	259
XagI	CCTNNNNNAGG	1 cut(s)	201
XspI	CTAG	6 cut(s)	414, 473, 534, 594, 623, 655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.