No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0146011 |
| rosa_laevigata | RLG00000010267 |
| rosa_multiflora | Rmu_sc0022686.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00027380 Rroxscaffold_2G00110940 Rroxscaffold_2G00121620 Rroxscaffold_2G00143750 Rroxscaffold_3G00238040 Rroxscaffold_4G00298100 Rroxscaffold_4G00307350 Rroxscaffold_5G00337660 Rroxscaffold_5G00346680 Rroxscaffold_5G00364780 Rroxscaffold_5G00366680 Rroxscaffold_6G00406170 Rroxscaffold_7G00189440 |
| rosa_rugosa | Rorug01G0433400 Rorug03G0172600 Rorug03G0172700 Rorug03G0368000.1 |
| rosa_samantha | Rh1DG097800 Rh2BG125800 Rh2DG127800 Rh3BG286500 Rh5BG445000 Rh7CG204100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 7 cut(s) | 91, 131, 137, 152, 183, 204, 236 |
| AclI | AACGTT | 1 cut(s) | 263 |
| AcsI | RAATTY | 1 cut(s) | 13 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 287 |
| AflII | CTTAAG | 2 cut(s) | 79, 86 |
| AflIII | ACRYGT | 1 cut(s) | 49 |
| AgsI | TTSAA | 1 cut(s) | 11 |
| AluBI | AGCT | 1 cut(s) | 147 |
| AluI | AGCT | 1 cut(s) | 147 |
| Alw26I | GTCTC | 3 cut(s) | 88, 149, 201 |
| ApoI | RAATTY | 1 cut(s) | 13 |
| AspLEI | GCGC | 1 cut(s) | 199 |
| AspS9I | GGNCC | 1 cut(s) | 30 |
| AsuHPI | GGTGA | 1 cut(s) | 208 |
| AsuNHI | GCTAGC | 1 cut(s) | 133 |
| AvaII | GGWCC | 1 cut(s) | 30 |
| BcoDI | GTCTC | 3 cut(s) | 88, 149, 201 |
| BfaI | CTAG | 1 cut(s) | 134 |
| BfrI | CTTAAG | 2 cut(s) | 79, 86 |
| BlpI | GCTNAGC | 2 cut(s) | 148, 200 |
| Bme18I | GGWCC | 1 cut(s) | 30 |
| BmgT120I | GGNCC | 1 cut(s) | 30 |
| BmiI | GGNNCC | 1 cut(s) | 31 |
| BmtI | GCTAGC | 1 cut(s) | 137 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 85, 117, 146, 178, 198, 230 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 148, 200 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 287 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 287 |
| BseMII | CTCAG | 1 cut(s) | 52 |
| BslFI | GGGAC | 1 cut(s) | 43 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 287 |
| BsmAI | GTCTC | 3 cut(s) | 88, 149, 201 |
| BsmFI | GGGAC | 1 cut(s) | 43 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 148, 200 |
| BspACI | CCGC | 7 cut(s) | 91, 131, 137, 152, 183, 204, 236 |
| BspCNI | CTCAG | 1 cut(s) | 51 |
| BspLI | GGNNCC | 1 cut(s) | 31 |
| BspOI | GCTAGC | 1 cut(s) | 137 |
| BspTI | CTTAAG | 2 cut(s) | 79, 86 |
| BstAFI | CTTAAG | 2 cut(s) | 79, 86 |
| BstC8I | GCNNGC | 3 cut(s) | 107, 135, 168 |
| BstDEI | CTNAG | 3 cut(s) | 38, 148, 200 |
| BstHHI | GCGC | 1 cut(s) | 199 |
| BstMAI | GTCTC | 3 cut(s) | 88, 149, 201 |
| BstNSI | RCATGY | 1 cut(s) | 53 |
| Cac8I | GCNNGC | 3 cut(s) | 107, 135, 168 |
| CfoI | GCGC | 1 cut(s) | 199 |
| Cfr13I | GGNCC | 1 cut(s) | 30 |
| CviAII | CATG | 1 cut(s) | 50 |
| CviJI | RGCY | 1 cut(s) | 147 |
| CviKI_1 | RGCY | 1 cut(s) | 147 |
| DdeI | CTNAG | 3 cut(s) | 38, 148, 200 |
| Eco47I | GGWCC | 1 cut(s) | 30 |
| FaeI | CATG | 1 cut(s) | 53 |
| FaiI | YATR | 2 cut(s) | 51, 244 |
| FaqI | GGGAC | 1 cut(s) | 43 |
| FatI | CATG | 1 cut(s) | 49 |
| FspBI | CTAG | 1 cut(s) | 134 |
| GlaI | GCGC | 1 cut(s) | 198 |
| HhaI | GCGC | 1 cut(s) | 199 |
| Hin1II | CATG | 1 cut(s) | 53 |
| Hin6I | GCGC | 1 cut(s) | 197 |
| HinP1I | GCGC | 1 cut(s) | 197 |
| HinfI | GANTC | 1 cut(s) | 232 |
| HphI | GGTGA | 1 cut(s) | 208 |
| Hpy166II | GTNNAC | 1 cut(s) | 70 |
| Hpy188I | TCNGA | 1 cut(s) | 282 |
| Hpy8I | GTNNAC | 1 cut(s) | 70 |
| Hpy99I | CGWCG | 1 cut(s) | 276 |
| HpyAV | CCTTC | 1 cut(s) | 53 |
| HpyCH4IV | ACGT | 3 cut(s) | 66, 263, 274 |
| HpyCH4V | TGCA | 3 cut(s) | 109, 170, 259 |
| HpyF3I | CTNAG | 3 cut(s) | 38, 148, 200 |
| HpySE526I | ACGT | 3 cut(s) | 66, 263, 274 |
| Hsp92II | CATG | 1 cut(s) | 53 |
| HspAI | GCGC | 1 cut(s) | 197 |
| LpnPI | CCDG | 1 cut(s) | 12 |
| MaeI | CTAG | 1 cut(s) | 134 |
| MaeII | ACGT | 3 cut(s) | 66, 263, 274 |
| MboII | GAAGA | 1 cut(s) | 260 |
| MluCI | AATT | 1 cut(s) | 13 |
| MnlI | CCTC | 1 cut(s) | 263 |
| MseI | TTAA | 3 cut(s) | 54, 80, 87 |
| MspCI | CTTAAG | 2 cut(s) | 79, 86 |
| NheI | GCTAGC | 1 cut(s) | 133 |
| NlaIII | CATG | 1 cut(s) | 53 |
| NlaIV | GGNNCC | 1 cut(s) | 31 |
| NspI | RCATGY | 1 cut(s) | 53 |
| PciI | ACATGT | 1 cut(s) | 49 |
| PfeI | GAWTC | 1 cut(s) | 232 |
| PflFI | GACNNNGTC | 1 cut(s) | 276 |
| PscI | ACATGT | 1 cut(s) | 49 |
| Psp1406I | AACGTT | 1 cut(s) | 263 |
| PspN4I | GGNNCC | 1 cut(s) | 31 |
| PspPI | GGNCC | 1 cut(s) | 30 |
| PsyI | GACNNNGTC | 1 cut(s) | 276 |
| SaqAI | TTAA | 3 cut(s) | 54, 80, 87 |
| Sau96I | GGNCC | 1 cut(s) | 30 |
| SetI | ASST | 6 cut(s) | 69, 149, 221, 255, 266, 277 |
| SinI | GGWCC | 1 cut(s) | 30 |
| SmlI | CTYRAG | 2 cut(s) | 79, 86 |
| SmoI | CTYRAG | 2 cut(s) | 79, 86 |
| Sse9I | AATT | 1 cut(s) | 13 |
| SsiI | CCGC | 7 cut(s) | 91, 131, 137, 152, 183, 204, 236 |
| SspMI | CTAG | 1 cut(s) | 134 |
| TaiI | ACGT | 3 cut(s) | 69, 266, 277 |
| TaqI | TCGA | 1 cut(s) | 271 |
| TasI | AATT | 1 cut(s) | 13 |
| TfiI | GAWTC | 1 cut(s) | 232 |
| Tru1I | TTAA | 3 cut(s) | 54, 80, 87 |
| Tru9I | TTAA | 3 cut(s) | 54, 80, 87 |
| TspDTI | ATGAA | 2 cut(s) | 10, 129 |
| Tth111I | GACNNNGTC | 1 cut(s) | 276 |
| Vha464I | CTTAAG | 2 cut(s) | 79, 86 |
| VpaK11BI | GGWCC | 1 cut(s) | 30 |
| XapI | RAATTY | 1 cut(s) | 13 |
| XceI | RCATGY | 1 cut(s) | 53 |
| XspI | CTAG | 1 cut(s) | 134 |