Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006965

Physical Location & Seq

Genomic Coordinates Forward (+)

81687474 .. 81695004

Gene Structure 7531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00143750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGAGGAGGTAGCGGAGGCCGAGGCCAAGTGGGATGGCGGCCGGGACCGTGAGCTCCGCGAACGGTTAGAGACGGCGAGAGGAACTGGGCTTTATGTTAAAAAGTACCAAGATGCCCAGCTTTGTAATGCTTTTTTCTATAAAAATGTTTCTATCAACCCCTGCAGTATAGGATCAACTTTCACACCAAAGCTTCAGGGGAAGTTTTTGGCCACAGAAAATTTCTTTTACACGTCTAAGGTTTTGTCCTCTCCATGCTTCAGCATTATCAGTTTATTAAGTATTAATTTGTTAAGCAATTTTGATCTAATGTTCATTTGTGGGAGACTAACTCGCTTGCAAGATGGAAAGGGGGAAGTTCCCCTAGCCGAGTTGCGCTTAGCGGAGACTAACTCACTTGCAAGGTGGAAAGGGAGAAGTTCCGCTAGCGGAGTTGTGCTTAGCGGAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005887 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0007155 GO:0007275 GO:0007596 GO:0007599 GO:0008150 GO:0008152 GO:0009056 GO:0009555 GO:0009611 GO:0009653 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016021 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017110 GO:0017111 GO:0019439 GO:0022414 GO:0022607 GO:0022610 GO:0030198 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0034641 GO:0034655 GO:0034656 GO:0042060 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0045229 GO:0046483 GO:0046700 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050817 GO:0050878 GO:0050896 GO:0055086 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0085029 GO:0090567 GO:0099402 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko05169 map00230 map00240 map05169

Pfam Domains

Protein Families

GDA1_CD39

Protein Analysis

150

Amino Acids

16.67

Weight (kDa)

8.36

Isoelectric Point (pI)

32.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006965)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0146011
rosa_laevigata	RLG00000010267
rosa_multiflora	Rmu_sc0022686.1_g000002
rosa_roxburghii	Rroxscaffold_1G00027380 Rroxscaffold_2G00110940 Rroxscaffold_2G00121620 Rroxscaffold_2G00143750 Rroxscaffold_3G00238040 Rroxscaffold_4G00298100 Rroxscaffold_4G00307350 Rroxscaffold_5G00337660 Rroxscaffold_5G00346680 Rroxscaffold_5G00364780 Rroxscaffold_5G00366680 Rroxscaffold_6G00406170 Rroxscaffold_7G00189440
rosa_rugosa	Rorug01G0433400 Rorug03G0172600 Rorug03G0172700 Rorug03G0368000.1
rosa_samantha	Rh1DG097800 Rh2BG125800 Rh2DG127800 Rh3BG286500 Rh5BG445000 Rh7CG204100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	60
AciI	CCGC	7 cut(s)	14, 39, 58, 383, 423, 429, 444
AclWI	GGATC	1 cut(s)	181
AcoI	YGGCCR	2 cut(s)	40, 210
AcsI	RAATTY	1 cut(s)	220
AcuI	CTGAAG	2 cut(s)	179, 244
AfaI	GTAC	1 cut(s)	107
AflIII	ACRYGT	1 cut(s)	231
AjiI	CACGTC	1 cut(s)	234
AluBI	AGCT	3 cut(s)	55, 121, 193
AluI	AGCT	3 cut(s)	55, 121, 193
Alw21I	GWGCWC	1 cut(s)	57
Alw26I	GTCTC	4 cut(s)	65, 319, 380, 441
AlwI	GGATC	1 cut(s)	181
AoxI	GGCC	4 cut(s)	18, 24, 40, 210
ApoI	RAATTY	1 cut(s)	220
AseI	ATTAAT	1 cut(s)	285
AspLEI	GCGC	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	46
AsuC2I	CCSGG	1 cut(s)	44
AsuNHI	GCTAGC	1 cut(s)	425
AvaII	GGWCC	1 cut(s)	46
BalI	TGGCCA	1 cut(s)	212
BanII	GRGCYC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	57
BccI	CCATC	2 cut(s)	29, 338
BceAI	ACGGC	1 cut(s)	90
BcnI	CCSGG	1 cut(s)	44
BcoDI	GTCTC	4 cut(s)	65, 319, 380, 441
BfaI	CTAG	2 cut(s)	365, 426
BfmI	CTRYAG	1 cut(s)	163
BisI	GCNGC	1 cut(s)	40
BlpI	GCTNAGC	2 cut(s)	379, 440
BlsI	GCNGC	1 cut(s)	41
Bme1390I	CCNGG	1 cut(s)	44
Bme18I	GGWCC	1 cut(s)	46
BmgBI	CACGTC	1 cut(s)	234
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	44
BmrI	ACTGGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	103
BmtI	GCTAGC	1 cut(s)	429
BmuI	ACTGGG	1 cut(s)	96
BplI	GAGNNNNNCTC	4 cut(s)	316, 348, 377, 409
Bpu1102I	GCTNAGC	2 cut(s)	379, 440
BpuMI	CCSGG	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	21
Bse1I	ACTGG	1 cut(s)	91
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	1 cut(s)	40
BseNI	ACTGG	1 cut(s)	91
BseRI	GAGGAG	1 cut(s)	20
BseX3I	CGGCCG	1 cut(s)	40
BseYI	CCCAGC	1 cut(s)	117
Bsh1236I	CGCG	1 cut(s)	60
Bsh1285I	CGRYCG	1 cut(s)	43
BshFI	GGCC	4 cut(s)	20, 26, 42, 212
BsiEI	CGRYCG	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	43
BslFI	GGGAC	1 cut(s)	59
BsmAI	GTCTC	4 cut(s)	65, 319, 380, 441
BsmBI	CGTCTC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	4 cut(s)	20, 26, 42, 212
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	2 cut(s)	173, 304
Bsp1720I	GCTNAGC	2 cut(s)	379, 440
BspACI	CCGC	7 cut(s)	14, 39, 58, 383, 423, 429, 444
BspANI	GGCC	4 cut(s)	20, 26, 42, 212
BspFNI	CGCG	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	47
BspMAI	CTGCAG	1 cut(s)	167
BspOI	GCTAGC	1 cut(s)	429
BspPI	GGATC	1 cut(s)	181
BsrI	ACTGG	1 cut(s)	91
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	2 cut(s)	173, 304
Bst4CI	ACNGT	2 cut(s)	50, 66
BstC8I	GCNNGC	2 cut(s)	338, 427
BstDEI	CTNAG	3 cut(s)	237, 379, 440
BstF5I	GGATG	1 cut(s)	40
BstFNI	CGCG	1 cut(s)	60
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	2 cut(s)	176, 307
BstMAI	GTCTC	4 cut(s)	65, 319, 380, 441
BstMBI	GATC	2 cut(s)	173, 304
BstMCI	CGRYCG	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	42
BstSFI	CTRYAG	1 cut(s)	163
BstUI	CGCG	1 cut(s)	60
BstZI	CGGCCG	1 cut(s)	40
BsuRI	GGCC	4 cut(s)	20, 26, 42, 212
BtrI	CACGTC	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	40
Cac8I	GCNNGC	2 cut(s)	338, 427
CfoI	GCGC	1 cut(s)	378
Cfr13I	GGNCC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	1 cut(s)	255
CviJI	RGCY	9 cut(s)	20, 26, 42, 55, 91, 121, 193, 212, 368
CviKI_1	RGCY	9 cut(s)	20, 26, 42, 55, 91, 121, 193, 212, 368
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	3 cut(s)	237, 379, 440
DpnI	GATC	2 cut(s)	175, 306
DpnII	GATC	2 cut(s)	173, 304
EaeI	YGGCCR	2 cut(s)	40, 210
EagI	CGGCCG	1 cut(s)	40
Ecl136II	GAGCTC	1 cut(s)	55
EclXI	CGGCCG	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	46
Eco52I	CGGCCG	1 cut(s)	40
Eco53kI	GAGCTC	1 cut(s)	55
Eco57I	CTGAAG	2 cut(s)	179, 244
EcoICRI	GAGCTC	1 cut(s)	55
EcoT38I	GRGCYC	1 cut(s)	57
Esp3I	CGTCTC	1 cut(s)	65
FaeI	CATG	1 cut(s)	258
FaiI	YATR	4 cut(s)	96, 141, 170, 256
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	1 cut(s)	254
Fnu4HI	GCNGC	1 cut(s)	40
FokI	GGATG	1 cut(s)	47
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	1 cut(s)	40
FspBI	CTAG	2 cut(s)	365, 426
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	1 cut(s)	40
GsaI	CCCAGC	1 cut(s)	121
HaeIII	GGCC	4 cut(s)	20, 26, 42, 212
HapII	CCGG	1 cut(s)	43
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	1 cut(s)	258
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HindIII	AAGCTT	1 cut(s)	191
HpaII	CCGG	1 cut(s)	43
HpyCH4III	ACNGT	2 cut(s)	50, 66
HpyCH4IV	ACGT	1 cut(s)	233
HpyCH4V	TGCA	3 cut(s)	165, 340, 401
HpyF3I	CTNAG	3 cut(s)	237, 379, 440
HpySE526I	ACGT	1 cut(s)	233
Hsp92II	CATG	1 cut(s)	258
HspAI	GCGC	1 cut(s)	376
Kzo9I	GATC	2 cut(s)	173, 304
LmnI	GCTCC	1 cut(s)	60
LpnPI	CCDG	5 cut(s)	56, 72, 131, 175, 182
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	2 cut(s)	365, 426
MaeII	ACGT	1 cut(s)	233
MalI	GATC	2 cut(s)	175, 306
MboI	GATC	2 cut(s)	173, 304
MhlI	GDGCHC	1 cut(s)	57
MlsI	TGGCCA	1 cut(s)	212
MluCI	AATT	3 cut(s)	220, 286, 298
MluNI	TGGCCA	1 cut(s)	212
MnlI	CCTC	4 cut(s)	10, 16, 74, 259
Mox20I	TGGCCA	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	212
MseI	TTAA	4 cut(s)	99, 278, 285, 293
Msp20I	TGGCCA	1 cut(s)	212
MspI	CCGG	1 cut(s)	43
MspR9I	CCNGG	1 cut(s)	44
MvnI	CGCG	1 cut(s)	60
NciI	CCSGG	1 cut(s)	44
NdeII	GATC	2 cut(s)	173, 304
NheI	GCTAGC	1 cut(s)	425
NlaIII	CATG	1 cut(s)	258
NlaIV	GGNNCC	1 cut(s)	47
NmeAIII	GCCGAG	2 cut(s)	46, 394
PkrI	GCNGC	1 cut(s)	41
PshBI	ATTAAT	1 cut(s)	285
Psp124BI	GAGCTC	1 cut(s)	57
PspFI	CCCAGC	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	47
PspPI	GGNCC	1 cut(s)	46
PstI	CTGCAG	1 cut(s)	167
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SacI	GAGCTC	1 cut(s)	57
SaqAI	TTAA	4 cut(s)	99, 278, 285, 293
SatI	GCNGC	1 cut(s)	40
Sau3AI	GATC	2 cut(s)	173, 304
Sau96I	GGNCC	1 cut(s)	46
ScrFI	CCNGG	1 cut(s)	44
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	7 cut(s)	12, 57, 123, 195, 236, 243, 407
SfaNI	GCATC	1 cut(s)	103
SfcI	CTRYAG	1 cut(s)	163
SinI	GGWCC	1 cut(s)	46
Sse9I	AATT	3 cut(s)	220, 286, 298
SsiI	CCGC	7 cut(s)	14, 39, 58, 383, 423, 429, 444
SspMI	CTAG	2 cut(s)	365, 426
SstI	GAGCTC	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	42
TaaI	ACNGT	2 cut(s)	50, 66
TaiI	ACGT	1 cut(s)	236
TasI	AATT	3 cut(s)	220, 286, 298
TauI	GCSGC	1 cut(s)	42
Tru1I	TTAA	4 cut(s)	99, 278, 285, 293
Tru9I	TTAA	4 cut(s)	99, 278, 285, 293
TspDTI	ATGAA	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	46
VspI	ATTAAT	1 cut(s)	285
XapI	RAATTY	1 cut(s)	220
XspI	CTAG	2 cut(s)	365, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.