Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006965

Physical Location & Seq

Genomic Coordinates Reverse (-)

26025972 .. 26029873

Gene Structure 3902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00238040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGGAGGCTTGCTTTGCCGCGGGATTTGTTGTTGTTAATGTTGCAAAAATGATGTTGCAAAAAGAAAAATGTTTCTATCAACCCTGCAATATAGGATCAATTTTCAAACCAAAACTTCAGGGGAAGTTTCTGGCTACAGAAAATTTCTTTCACACATCCAAGGTTAAATATTCTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005887 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0007155 GO:0007275 GO:0007596 GO:0007599 GO:0008150 GO:0008152 GO:0009056 GO:0009555 GO:0009611 GO:0009653 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016021 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017110 GO:0017111 GO:0019439 GO:0022414 GO:0022607 GO:0022610 GO:0030198 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0034641 GO:0034655 GO:0034656 GO:0042060 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0045229 GO:0046483 GO:0046700 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050817 GO:0050878 GO:0050896 GO:0055086 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0085029 GO:0090567 GO:0099402 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko05169 map00230 map00240 map05169

Pfam Domains

Protein Families

GDA1_CD39

Protein Analysis

59

Amino Acids

6.7

Weight (kDa)

9.24

Isoelectric Point (pI)

44.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006965)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0146011
rosa_laevigata	RLG00000010267
rosa_multiflora	Rmu_sc0022686.1_g000002
rosa_roxburghii	Rroxscaffold_1G00027380 Rroxscaffold_2G00110940 Rroxscaffold_2G00121620 Rroxscaffold_2G00143750 Rroxscaffold_3G00238040 Rroxscaffold_4G00298100 Rroxscaffold_4G00307350 Rroxscaffold_5G00337660 Rroxscaffold_5G00346680 Rroxscaffold_5G00364780 Rroxscaffold_5G00366680 Rroxscaffold_6G00406170 Rroxscaffold_7G00189440
rosa_rugosa	Rorug01G0433400 Rorug03G0172600 Rorug03G0172700 Rorug03G0368000.1
rosa_samantha	Rh1DG097800 Rh2BG125800 Rh2DG127800 Rh3BG286500 Rh5BG445000 Rh7CG204100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	20
AciI	CCGC	2 cut(s)	18, 20
AclWI	GGATC	1 cut(s)	103
AcsI	RAATTY	1 cut(s)	142
AcuI	CTGAAG	1 cut(s)	101
AgsI	TTSAA	1 cut(s)	106
AlwI	GGATC	1 cut(s)	103
ApoI	RAATTY	1 cut(s)	142
BfmI	CTRYAG	1 cut(s)	135
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
BsaJI	CCNNGG	2 cut(s)	18, 159
BseDI	CCNNGG	2 cut(s)	18, 159
BseGI	GGATG	1 cut(s)	155
Bsh1236I	CGCG	1 cut(s)	20
Bsp143I	GATC	1 cut(s)	95
BspACI	CCGC	2 cut(s)	18, 20
BspFNI	CGCG	1 cut(s)	20
BspPI	GGATC	1 cut(s)	103
BssECI	CCNNGG	2 cut(s)	18, 159
BssMI	GATC	1 cut(s)	95
BssT1I	CCWWGG	1 cut(s)	159
BstC8I	GCNNGC	1 cut(s)	10
BstDSI	CCRYGG	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	155
BstFNI	CGCG	1 cut(s)	20
BstKTI	GATC	1 cut(s)	98
BstMBI	GATC	1 cut(s)	95
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstSFI	CTRYAG	1 cut(s)	135
BstUI	CGCG	1 cut(s)	20
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	155
Cac8I	GCNNGC	1 cut(s)	10
Cfr42I	CCGCGG	1 cut(s)	21
CviJI	RGCY	2 cut(s)	8, 134
CviKI_1	RGCY	2 cut(s)	8, 134
DpnI	GATC	1 cut(s)	97
DpnII	GATC	1 cut(s)	95
Eco130I	CCWWGG	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaiI	YATR	1 cut(s)	92
FauI	CCCGC	1 cut(s)	13
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	1 cut(s)	142
Fsp4HI	GCNGC	1 cut(s)	18
GluI	GCNGC	1 cut(s)	18
HpyCH4V	TGCA	3 cut(s)	44, 58, 87
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
KspI	CCGCGG	1 cut(s)	21
Kzo9I	GATC	1 cut(s)	95
LpnPI	CCDG	3 cut(s)	97, 104, 116
MalI	GATC	1 cut(s)	97
MboI	GATC	1 cut(s)	95
MluCI	AATT	2 cut(s)	99, 142
MseI	TTAA	2 cut(s)	36, 165
MspA1I	CMGCKG	1 cut(s)	20
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeII	GATC	1 cut(s)	95
PkrI	GCNGC	1 cut(s)	19
SacII	CCGCGG	1 cut(s)	21
SaqAI	TTAA	2 cut(s)	36, 165
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	1 cut(s)	95
SetI	ASST	1 cut(s)	165
SfcI	CTRYAG	1 cut(s)	135
Sfr303I	CCGCGG	1 cut(s)	21
SgeI	CNNG	7 cut(s)	21, 31, 33, 96, 131, 143, 172
SgrBI	CCGCGG	1 cut(s)	21
Sse9I	AATT	2 cut(s)	99, 142
SsiI	CCGC	2 cut(s)	18, 20
SspI	AATATT	1 cut(s)	170
StyI	CCWWGG	1 cut(s)	159
TasI	AATT	2 cut(s)	99, 142
TauI	GCSGC	1 cut(s)	20
Tru1I	TTAA	2 cut(s)	36, 165
Tru9I	TTAA	2 cut(s)	36, 165
XapI	RAATTY	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.