Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007588

Physical Location & Seq

Genomic Coordinates Forward (+)

56248545 .. 56248922

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00122840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGCGGCTCCAGATTCCGGCCCCCAGGGGCTGACGCGACGGCCGTCACGGAGCGCGACGTTTTCGACGGAGGTCTTCGACAACGAGGTCGTCCCCTCCGCCATCGCCCCTATCGCTCCGCTCCTCCGCGTCGCCAACGAAGTCGAGCCCGAGCGCCCTCGCGTCGCCTATCTCTGTCGGTTCTACGCGTTTGAGAAGGCGCACAGATTGGACCCCGGCTCCAGCGGCCGTGGTGTGAGGCAGTTCAAGACCTTGCTCCTGCAGCGATTGGAGAGGGTAAGCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006075 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009555 GO:0009556 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010208 GO:0010769 GO:0010927 GO:0016043 GO:0016049 GO:0016051 GO:0019953 GO:0022402 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0030154 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034293 GO:0034637 GO:0034645 GO:0040007 GO:0040008 GO:0043062 GO:0043170 GO:0043900 GO:0043934 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044703 GO:0044706 GO:0045229 GO:0045595 GO:0048229 GO:0048236 GO:0048468 GO:0048588 GO:0048589 GO:0048638 GO:0048646 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051273 GO:0051274 GO:0051321 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0080092 GO:0085029 GO:1901576 GO:1903046 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase Vta1

Protein Analysis

95

Amino Acids

10.57

Weight (kDa)

9.61

Isoelectric Point (pI)

62.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vta1	PF04652	38 - 92	2.9e-09	Vta1 like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007588)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13680
fragaria_vesca	FvH4_1g24300
malus_domestica	MD01G1004000.v1.1 MD01G1004100.v1.1 MD02G1211500.v1.1
prunus_persica	Prupe.4G271000_v2.0.a1
pyrus_communis	pycom01g02040 pycom15g30380
rosa_chinensis	RchiOBHm_Chr2g0120781
rosa_laevigata	RLG00000018581 RLG00000018588
rosa_roxburghii	Rroxscaffold_2G00122840 Rroxscaffold_2G00122950
rosa_rugosa	Rorug02G0231300
rosa_samantha	Rh2AG287900 Rh2AG288000 Rh2AG288100 Rh2BG299200 Rh2BG299300 Rh2CG277200 Rh2CG277300 Rh2DG313100 Rh2DG313200
rosa_wichuraiana	Rw2G023080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	86
AccBSI	CCGCTC	1 cut(s)	121
AccII	CGCG	5 cut(s)	37, 56, 129, 162, 188
AciI	CCGC	5 cut(s)	5, 99, 119, 127, 225
AcoI	YGGCCR	2 cut(s)	41, 226
AfiI	CCNNNNNNNGG	1 cut(s)	17
AflIII	ACRYGT	1 cut(s)	186
AgsI	TTSAA	1 cut(s)	247
AjnI	CCWGG	1 cut(s)	24
AlwNI	CAGNNNCTG	1 cut(s)	31
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	3 cut(s)	19, 41, 226
ApeKI	GCWGC	1 cut(s)	262
AspLEI	GCGC	3 cut(s)	56, 156, 202
AspS9I	GGNCC	2 cut(s)	20, 211
AsuC2I	CCSGG	1 cut(s)	216
AvaI	CYCGRG	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	211
BanII	GRGCYC	1 cut(s)	150
BbsI	GAAGAC	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	1 cut(s)	110
BceAI	ACGGC	3 cut(s)	28, 56, 213
BciT130I	CCWGG	1 cut(s)	26
BcnI	CCSGG	1 cut(s)	216
BfmI	CTRYAG	1 cut(s)	260
BfoI	RGCGCY	1 cut(s)	157
BisI	GCNGC	3 cut(s)	6, 226, 263
BlsI	GCNGC	3 cut(s)	7, 227, 264
Bme1390I	CCNGG	2 cut(s)	26, 216
Bme18I	GGWCC	1 cut(s)	211
BmeT110I	CYCGRG	1 cut(s)	149
BmgT120I	GGNCC	2 cut(s)	20, 211
BmiI	GGNNCC	4 cut(s)	9, 22, 213, 220
BmrFI	CCNGG	2 cut(s)	26, 216
BoxI	GACNNNNGTC	2 cut(s)	43, 71
BpiI	GAAGAC	1 cut(s)	67
BpmI	CTGGAG	1 cut(s)	205
BpuMI	CCSGG	1 cut(s)	216
BsaJI	CCNNGG	4 cut(s)	24, 25, 214, 229
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	4 cut(s)	24, 25, 214, 229
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseRI	GAGGAG	1 cut(s)	113
BseX3I	CGGCCG	2 cut(s)	41, 226
BseXI	GCAGC	1 cut(s)	274
Bsh1236I	CGCG	5 cut(s)	37, 56, 129, 162, 188
Bsh1285I	CGRYCG	2 cut(s)	44, 229
BshFI	GGCC	3 cut(s)	21, 43, 228
BsiEI	CGRYCG	2 cut(s)	44, 229
BsiHKCI	CYCGRG	1 cut(s)	149
BsiSI	CCGG	2 cut(s)	18, 216
BslFI	GGGAC	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	17
BsmFI	GGGAC	1 cut(s)	77
BsnI	GGCC	3 cut(s)	21, 43, 228
BsoBI	CYCGRG	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	150
BspACI	CCGC	5 cut(s)	5, 99, 119, 127, 225
BspANI	GGCC	3 cut(s)	21, 43, 228
BspFNI	CGCG	5 cut(s)	37, 56, 129, 162, 188
BspLI	GGNNCC	4 cut(s)	9, 22, 213, 220
BspMAI	CTGCAG	1 cut(s)	264
BsrBI	CCGCTC	1 cut(s)	121
BssECI	CCNNGG	4 cut(s)	24, 25, 214, 229
Bst2UI	CCWGG	1 cut(s)	26
BstDSI	CCRYGG	1 cut(s)	229
BstFNI	CGCG	5 cut(s)	37, 56, 129, 162, 188
BstH2I	RGCGCY	1 cut(s)	157
BstHHI	GCGC	3 cut(s)	56, 156, 202
BstMCI	CGRYCG	2 cut(s)	44, 229
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 225, 262
BstNI	CCWGG	1 cut(s)	26
BstPAI	GACNNNNGTC	2 cut(s)	43, 71
BstSCI	CCNGG	2 cut(s)	24, 214
BstSFI	CTRYAG	1 cut(s)	260
BstUI	CGCG	5 cut(s)	37, 56, 129, 162, 188
BstV1I	GCAGC	1 cut(s)	274
BstV2I	GAAGAC	1 cut(s)	67
BstZI	CGGCCG	2 cut(s)	41, 226
BsuRI	GGCC	3 cut(s)	21, 43, 228
BtgI	CCRYGG	1 cut(s)	229
BtgZI	GCGATG	1 cut(s)	88
CaiI	CAGNNNCTG	1 cut(s)	31
CfoI	GCGC	3 cut(s)	56, 156, 202
Cfr13I	GGNCC	2 cut(s)	20, 211
CseI	GACGC	3 cut(s)	43, 118, 151
CviJI	RGCY	7 cut(s)	8, 21, 31, 43, 148, 219, 228
CviKI_1	RGCY	7 cut(s)	8, 21, 31, 43, 148, 219, 228
DrdI	GACNNNNNNGTC	1 cut(s)	86
DseDI	GACNNNNNNGTC	1 cut(s)	86
EaeI	YGGCCR	2 cut(s)	41, 226
EagI	CGGCCG	2 cut(s)	41, 226
EciI	GGCGGA	1 cut(s)	88
EclXI	CGGCCG	2 cut(s)	41, 226
Eco24I	GRGCYC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	211
Eco52I	CGGCCG	2 cut(s)	41, 226
Eco88I	CYCGRG	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	24
EcoT38I	GRGCYC	1 cut(s)	150
FaqI	GGGAC	1 cut(s)	77
Fnu4HI	GCNGC	3 cut(s)	6, 226, 263
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	3 cut(s)	6, 226, 263
GlaI	GCGC	3 cut(s)	55, 155, 201
GluI	GCNGC	3 cut(s)	6, 226, 263
GsuI	CTGGAG	1 cut(s)	205
HaeII	RGCGCY	1 cut(s)	157
HaeIII	GGCC	3 cut(s)	21, 43, 228
HapII	CCGG	2 cut(s)	18, 216
HgaI	GACGC	3 cut(s)	43, 118, 151
HhaI	GCGC	3 cut(s)	56, 156, 202
Hin6I	GCGC	3 cut(s)	54, 154, 200
HinP1I	GCGC	3 cut(s)	54, 154, 200
HinfI	GANTC	1 cut(s)	14
HpaII	CCGG	2 cut(s)	18, 216
Hpy188III	TCNNGA	2 cut(s)	11, 247
Hpy99I	CGWCG	5 cut(s)	42, 61, 70, 134, 167
HpyAV	CCTTC	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	1 cut(s)	262
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 225, 262
HpySE526I	ACGT	1 cut(s)	59
HspAI	GCGC	3 cut(s)	54, 154, 200
LmnI	GCTCC	6 cut(s)	13, 51, 121, 126, 224, 261
LpnPI	CCDG	7 cut(s)	11, 24, 31, 38, 229, 235, 272
Lsp1109I	GCAGC	1 cut(s)	274
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	45
MbiI	CCGCTC	1 cut(s)	121
MboII	GAAGA	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	150
MluI	ACGCGT	1 cut(s)	186
MnlI	CCTC	7 cut(s)	64, 79, 106, 134, 168, 231, 267
MseI	TTAA	1 cut(s)	286
MspA1I	CMGCKG	1 cut(s)	225
MspI	CCGG	2 cut(s)	18, 216
MspR9I	CCNGG	2 cut(s)	26, 216
MvaI	CCWGG	1 cut(s)	26
MvnI	CGCG	5 cut(s)	37, 56, 129, 162, 188
MwoI	GCNNNNNNNGC	3 cut(s)	113, 225, 262
NciI	CCSGG	1 cut(s)	216
NlaIV	GGNNCC	4 cut(s)	9, 22, 213, 220
NmuCI	GTSAC	1 cut(s)	45
PasI	CCCWGGG	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	3 cut(s)	7, 227, 264
PshAI	GACNNNNGTC	2 cut(s)	43, 71
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	4 cut(s)	9, 22, 213, 220
PspPI	GGNCC	2 cut(s)	20, 211
PstI	CTGCAG	1 cut(s)	264
PstNI	CAGNNNCTG	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	286
SatI	GCNGC	3 cut(s)	6, 226, 263
Sau96I	GGNCC	2 cut(s)	20, 211
ScrFI	CCNGG	2 cut(s)	26, 216
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	4 cut(s)	62, 75, 90, 254
SfcI	CTRYAG	1 cut(s)	260
SinI	GGWCC	1 cut(s)	211
SsiI	CCGC	5 cut(s)	5, 99, 119, 127, 225
StyD4I	CCNGG	2 cut(s)	24, 214
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	3 cut(s)	65, 78, 144
TauI	GCSGC	2 cut(s)	8, 228
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	1 cut(s)	286
Tru9I	TTAA	1 cut(s)	286
TseFI	GTSAC	1 cut(s)	45
TseI	GCWGC	1 cut(s)	262
Tsp45I	GTSAC	1 cut(s)	45
TspGWI	ACGGA	2 cut(s)	64, 83
VpaK11BI	GGWCC	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.