Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007588

Physical Location & Seq

Genomic Coordinates Reverse (-)

35256986 .. 35258870

Gene Structure 1885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG288100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCGGCTCCAGATTCCGGCCCCCAGGGGCTGACGCGACGGCCGTCACGGAGCGCCGCGACGACGACGTTTTCGACGGAGGTCTTCGACAACGAGGTCGTCCCCTCCGCCATCGCCCCTATCGCTCCGCTCCTCCGCGTCGCCAACGAAGTCGAGCCCGAGCGCCCTCGCGTCGCCTATCTCTGTCGGTTCTACGCGTTTGAGAAGGCGCACAGATTGGACCCCGGCTCCAGCGGCCGTGGTGTGAGGCAGTTCAAGACCTTGCTCCTGCAGCGATTGGAGAGGGAAAATGCATCAAGTCTTTCTGCTCGAGTTAAAAAGTCTGATGCCAGGGAAATTACAAGCTTCTATCAGCAATATTATGATCACTATGTTAAAGCTGTTCAAGAGGAGCAGGTAGACAGAGCTCAAGTGAGTAAAGCCTACAATACACTTAACCAGCTTTTTGAAGTACTTTGCGGGGTTAACAAGTCAGAGAAAGTTGAAGAAGTTGCTCCTGAGATTATTGCAGCCGCTAGAGATGTCCAAGAGAAGACGGAAATATACGCCCCGTATAATATTCTTCCTTTGGATTCTGCTGGTGCTACACAGTCTGTCATGCAGCTTGACGAGGTTAAGGCCGCTGTGGCTGCACTGTGGAATACTCGTGGTTTAAATTGGCCAAGTGCATTCGAGCAGCACAGACAAAAAGCTAATGATTTGGATCTCCTTGATTGGCTCAGGGCCATGTTTGGGTTCCAGGCATGTATAAAAAAGATGGATTCTAATGATTGGCTTAGTCACCGTATTTCCTCAAAGAAATTATTAACACATTTCTCTATTTTGGTTGCTGCAGAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006075 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009555 GO:0009556 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010208 GO:0010769 GO:0010927 GO:0016043 GO:0016049 GO:0016051 GO:0019953 GO:0022402 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0030154 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034293 GO:0034637 GO:0034645 GO:0040007 GO:0040008 GO:0043062 GO:0043170 GO:0043900 GO:0043934 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044703 GO:0044706 GO:0045229 GO:0045595 GO:0048229 GO:0048236 GO:0048468 GO:0048588 GO:0048589 GO:0048638 GO:0048646 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051273 GO:0051274 GO:0051321 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0080092 GO:0085029 GO:1901576 GO:1903046 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase Vta1

Protein Analysis

280

Amino Acids

31.55

Weight (kDa)

7.71

Isoelectric Point (pI)

53.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vta1	PF04652	41 - 164	5e-14	Vta1 like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007588)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13680
fragaria_vesca	FvH4_1g24300
malus_domestica	MD01G1004000.v1.1 MD01G1004100.v1.1 MD02G1211500.v1.1
prunus_persica	Prupe.4G271000_v2.0.a1
pyrus_communis	pycom01g02040 pycom15g30380
rosa_chinensis	RchiOBHm_Chr2g0120781
rosa_laevigata	RLG00000018581 RLG00000018588
rosa_roxburghii	Rroxscaffold_2G00122840 Rroxscaffold_2G00122950
rosa_rugosa	Rorug02G0231300
rosa_samantha	Rh2AG287900 Rh2AG288000 Rh2AG288100 Rh2BG299200 Rh2BG299300 Rh2CG277200 Rh2CG277300 Rh2DG313100 Rh2DG313200
rosa_wichuraiana	Rw2G023080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	95
Acc36I	ACCTGC	1 cut(s)	385
AccBSI	CCGCTC	1 cut(s)	130
AccI	GTMKAC	1 cut(s)	399
AccII	CGCG	5 cut(s)	37, 59, 138, 171, 197
AciI	CCGC	9 cut(s)	5, 57, 108, 128, 136, 234, 459, 513, 621
AclWI	GGATC	1 cut(s)	711
AcoI	YGGCCR	3 cut(s)	41, 235, 659
AfaI	GTAC	1 cut(s)	453
AfiI	CCNNNNNNNGG	2 cut(s)	17, 732
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	4 cut(s)	256, 386, 449, 485
AjnI	CCWGG	3 cut(s)	24, 329, 738
AluBI	AGCT	6 cut(s)	345, 380, 407, 442, 604, 692
AluI	AGCT	6 cut(s)	345, 380, 407, 442, 604, 692
Alw21I	GWGCWC	1 cut(s)	409
AlwI	GGATC	1 cut(s)	711
AlwNI	CAGNNNCTG	1 cut(s)	31
Ama87I	CYCGRG	2 cut(s)	158, 309
AoxI	GGCC	6 cut(s)	19, 41, 235, 618, 659, 723
ApeKI	GCWGC	6 cut(s)	271, 509, 601, 629, 676, 830
ArsI	GACNNNNNNTTYG	2 cut(s)	55, 87
AspLEI	GCGC	3 cut(s)	56, 165, 211
AspS9I	GGNCC	3 cut(s)	20, 220, 723
AsuC2I	CCSGG	1 cut(s)	225
AsuHPI	GGTGA	1 cut(s)	773
AvaI	CYCGRG	2 cut(s)	158, 309
AvaII	GGWCC	1 cut(s)	220
BalI	TGGCCA	1 cut(s)	661
BanII	GRGCYC	2 cut(s)	159, 409
BauI	CACGAG	1 cut(s)	645
BbsI	GAAGAC	2 cut(s)	76, 539
Bbv12I	GWGCWC	1 cut(s)	409
BbvI	GCAGC	6 cut(s)	283, 521, 613, 616, 688, 817
BccI	CCATC	2 cut(s)	119, 751
BceAI	ACGGC	3 cut(s)	28, 56, 222
BciT130I	CCWGG	3 cut(s)	26, 331, 740
BclI	TGATCA	1 cut(s)	364
BcnI	CCSGG	1 cut(s)	225
BfaI	CTAG	1 cut(s)	516
BfmI	CTRYAG	2 cut(s)	269, 831
BfoI	RGCGCY	2 cut(s)	57, 166
BfuAI	ACCTGC	1 cut(s)	385
BglI	GCCNNNNNGGC	1 cut(s)	626
BmcAI	AGTACT	1 cut(s)	453
Bme1390I	CCNGG	4 cut(s)	26, 225, 331, 740
Bme18I	GGWCC	1 cut(s)	220
BmeT110I	CYCGRG	2 cut(s)	158, 309
BmgT120I	GGNCC	3 cut(s)	20, 220, 723
BmiI	GGNNCC	5 cut(s)	9, 22, 222, 229, 737
BmrFI	CCNGG	4 cut(s)	26, 225, 331, 740
BmsI	GCATC	2 cut(s)	302, 316
BoxI	GACNNNNGTC	2 cut(s)	43, 80
BpiI	GAAGAC	2 cut(s)	76, 539
BpmI	CTGGAG	1 cut(s)	214
Bpu10I	CCTNAGC	1 cut(s)	719
BpuEI	CTTGAG	1 cut(s)	393
BpuMI	CCSGG	1 cut(s)	225
BsaBI	GATNNNNATC	1 cut(s)	702
BsaJI	CCNNGG	5 cut(s)	24, 25, 223, 238, 330
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 732
Bse8I	GATNNNNATC	1 cut(s)	702
BseBI	CCWGG	3 cut(s)	26, 331, 740
BseDI	CCNNGG	5 cut(s)	24, 25, 223, 238, 330
BseJI	GATNNNNATC	1 cut(s)	702
BseLI	CCNNNNNNNGG	2 cut(s)	17, 732
BseMII	CTCAG	2 cut(s)	489, 733
BseRI	GAGGAG	2 cut(s)	122, 404
BseX3I	CGGCCG	2 cut(s)	41, 235
BseXI	GCAGC	6 cut(s)	283, 521, 613, 616, 688, 817
BsgI	GTGCAG	1 cut(s)	615
Bsh1236I	CGCG	5 cut(s)	37, 59, 138, 171, 197
Bsh1285I	CGRYCG	2 cut(s)	44, 238
BshFI	GGCC	6 cut(s)	21, 43, 237, 620, 661, 725
BsiEI	CGRYCG	2 cut(s)	44, 238
BsiHKAI	GWGCWC	1 cut(s)	409
BsiHKCI	CYCGRG	2 cut(s)	158, 309
BsiSI	CCGG	2 cut(s)	18, 225
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	2 cut(s)	17, 732
BsmFI	GGGAC	1 cut(s)	86
BsmI	GAATGC	1 cut(s)	668
BsnI	GGCC	6 cut(s)	21, 43, 237, 620, 661, 725
BsoBI	CYCGRG	2 cut(s)	158, 309
Bsp1286I	GDGCHC	2 cut(s)	159, 409
Bsp143I	GATC	2 cut(s)	364, 703
BspACI	CCGC	9 cut(s)	5, 57, 108, 128, 136, 234, 459, 513, 621
BspANI	GGCC	6 cut(s)	21, 43, 237, 620, 661, 725
BspCNI	CTCAG	2 cut(s)	490, 732
BspFNI	CGCG	5 cut(s)	37, 59, 138, 171, 197
BspLI	GGNNCC	5 cut(s)	9, 22, 222, 229, 737
BspMAI	CTGCAG	2 cut(s)	273, 835
BspMI	ACCTGC	1 cut(s)	385
BspPI	GGATC	1 cut(s)	711
BsrBI	CCGCTC	1 cut(s)	130
BssECI	CCNNGG	5 cut(s)	24, 25, 223, 238, 330
BssMI	GATC	2 cut(s)	364, 703
BssSI	CACGAG	1 cut(s)	645
Bst2BI	CACGAG	1 cut(s)	645
Bst2UI	CCWGG	3 cut(s)	26, 331, 740
Bst4CI	ACNGT	3 cut(s)	591, 636, 785
BstDEI	CTNAG	3 cut(s)	498, 719, 776
BstDSI	CCRYGG	1 cut(s)	238
BstFNI	CGCG	5 cut(s)	37, 59, 138, 171, 197
BstH2I	RGCGCY	2 cut(s)	57, 166
BstHHI	GCGC	3 cut(s)	56, 165, 211
BstKTI	GATC	2 cut(s)	367, 706
BstMBI	GATC	2 cut(s)	364, 703
BstMCI	CGRYCG	2 cut(s)	44, 238
BstMWI	GCNNNNNNNGC	5 cut(s)	122, 234, 271, 626, 629
BstNI	CCWGG	3 cut(s)	26, 331, 740
BstNSI	RCATGY	1 cut(s)	747
BstPAI	GACNNNNGTC	2 cut(s)	43, 80
BstSCI	CCNGG	4 cut(s)	24, 223, 329, 738
BstSFI	CTRYAG	2 cut(s)	269, 831
BstUI	CGCG	5 cut(s)	37, 59, 138, 171, 197
BstV1I	GCAGC	6 cut(s)	283, 521, 613, 616, 688, 817
BstV2I	GAAGAC	2 cut(s)	76, 539
BstX2I	RGATCY	1 cut(s)	703
BstYI	RGATCY	1 cut(s)	703
BstZI	CGGCCG	2 cut(s)	41, 235
BsuRI	GGCC	6 cut(s)	21, 43, 237, 620, 661, 725
BtgI	CCRYGG	1 cut(s)	238
BtgZI	GCGATG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	632
BveI	ACCTGC	1 cut(s)	385
CaiI	CAGNNNCTG	1 cut(s)	31
CfoI	GCGC	3 cut(s)	56, 165, 211
Cfr13I	GGNCC	3 cut(s)	20, 220, 723
CseI	GACGC	3 cut(s)	43, 127, 160
Csp6I	GTAC	1 cut(s)	452
CviAII	CATG	3 cut(s)	598, 727, 744
CviQI	GTAC	1 cut(s)	452
DdeI	CTNAG	3 cut(s)	498, 719, 776
DpnI	GATC	2 cut(s)	366, 705
DpnII	GATC	2 cut(s)	364, 703
DraI	TTTAAA	1 cut(s)	654
DrdI	GACNNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	95
EaeI	YGGCCR	3 cut(s)	41, 235, 659
EagI	CGGCCG	2 cut(s)	41, 235
EciI	GGCGGA	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	407
EclXI	CGGCCG	2 cut(s)	41, 235
Eco24I	GRGCYC	2 cut(s)	159, 409
Eco47I	GGWCC	1 cut(s)	220
Eco52I	CGGCCG	2 cut(s)	41, 235
Eco53kI	GAGCTC	1 cut(s)	407
Eco88I	CYCGRG	2 cut(s)	158, 309
EcoICRI	GAGCTC	1 cut(s)	407
EcoRII	CCWGG	3 cut(s)	24, 329, 738
EcoT22I	ATGCAT	1 cut(s)	295
EcoT38I	GRGCYC	2 cut(s)	159, 409
FaeI	CATG	3 cut(s)	601, 730, 747
FaiI	YATR	8 cut(s)	363, 372, 544, 555, 599, 728, 745, 749
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	3 cut(s)	597, 726, 743
FauI	CCCGC	1 cut(s)	452
FbaI	TGATCA	1 cut(s)	364
FblI	GTMKAC	1 cut(s)	399
FriOI	GRGCYC	2 cut(s)	159, 409
FspBI	CTAG	1 cut(s)	516
GlaI	GCGC	3 cut(s)	55, 164, 210
GsuI	CTGGAG	1 cut(s)	214
HaeII	RGCGCY	2 cut(s)	57, 166
HaeIII	GGCC	6 cut(s)	21, 43, 237, 620, 661, 725
HapII	CCGG	2 cut(s)	18, 225
HgaI	GACGC	3 cut(s)	43, 127, 160
HhaI	GCGC	3 cut(s)	56, 165, 211
Hin1II	CATG	3 cut(s)	601, 730, 747
Hin6I	GCGC	3 cut(s)	54, 163, 209
HinP1I	GCGC	3 cut(s)	54, 163, 209
HincII	GTYRAC	1 cut(s)	466
HindII	GTYRAC	1 cut(s)	466
HindIII	AAGCTT	1 cut(s)	343
HinfI	GANTC	3 cut(s)	14, 572, 761
HpaI	GTTAAC	1 cut(s)	466
HpaII	CCGG	2 cut(s)	18, 225
HphI	GGTGA	1 cut(s)	773
Hpy166II	GTNNAC	2 cut(s)	400, 466
Hpy188I	TCNGA	2 cut(s)	325, 475
Hpy188III	TCNNGA	4 cut(s)	11, 256, 386, 497
Hpy8I	GTNNAC	2 cut(s)	400, 466
Hpy99I	CGWCG	7 cut(s)	42, 64, 67, 70, 79, 143, 176
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	3 cut(s)	591, 636, 785
HpyCH4IV	ACGT	1 cut(s)	68
HpyCH4V	TGCA	7 cut(s)	271, 293, 509, 601, 632, 668, 833
HpyF10VI	GCNNNNNNNGC	5 cut(s)	122, 234, 271, 626, 629
HpyF3I	CTNAG	3 cut(s)	498, 719, 776
HpySE526I	ACGT	1 cut(s)	68
Hsp92II	CATG	3 cut(s)	601, 730, 747
HspAI	GCGC	3 cut(s)	54, 163, 209
Ksp22I	TGATCA	1 cut(s)	364
KspAI	GTTAAC	1 cut(s)	466
Kzo9I	GATC	2 cut(s)	364, 703
LmnI	GCTCC	8 cut(s)	13, 51, 130, 135, 233, 270, 391, 499
Lsp1109I	GCAGC	6 cut(s)	283, 521, 613, 616, 688, 817
LweI	GCATC	2 cut(s)	302, 316
MaeI	CTAG	1 cut(s)	516
MaeII	ACGT	1 cut(s)	68
MaeIII	GTNAC	2 cut(s)	45, 779
MalI	GATC	2 cut(s)	366, 705
MbiI	CCGCTC	1 cut(s)	130
MboI	GATC	2 cut(s)	364, 703
MboII	GAAGA	4 cut(s)	76, 497, 544, 554
MflI	RGATCY	1 cut(s)	703
MhlI	GDGCHC	2 cut(s)	159, 409
MlsI	TGGCCA	1 cut(s)	661
MluCI	AATT	3 cut(s)	336, 655, 800
MluI	ACGCGT	1 cut(s)	195
MluNI	TGGCCA	1 cut(s)	661
Mox20I	TGGCCA	1 cut(s)	661
Mph1103I	ATGCAT	1 cut(s)	295
MscI	TGGCCA	1 cut(s)	661
MseI	TTAA	7 cut(s)	315, 375, 435, 465, 615, 653, 806
Msp20I	TGGCCA	1 cut(s)	661
MspA1I	CMGCKG	2 cut(s)	234, 623
MspI	CCGG	2 cut(s)	18, 225
MspR9I	CCNGG	4 cut(s)	26, 225, 331, 740
Mva1269I	GAATGC	1 cut(s)	668
MvaI	CCWGG	3 cut(s)	26, 331, 740
MvnI	CGCG	5 cut(s)	37, 59, 138, 171, 197
MwoI	GCNNNNNNNGC	5 cut(s)	122, 234, 271, 626, 629
NciI	CCSGG	1 cut(s)	225
NdeII	GATC	2 cut(s)	364, 703
NlaIII	CATG	3 cut(s)	601, 730, 747
NlaIV	GGNNCC	5 cut(s)	9, 22, 222, 229, 737
NmuCI	GTSAC	2 cut(s)	45, 779
NsiI	ATGCAT	1 cut(s)	295
NspI	RCATGY	1 cut(s)	747
PaeR7I	CTCGAG	1 cut(s)	309
PasI	CCCWGGG	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	2 cut(s)	41, 71
PctI	GAATGC	1 cut(s)	668
PfeI	GAWTC	3 cut(s)	14, 572, 761
PshAI	GACNNNNGTC	2 cut(s)	43, 80
Psp124BI	GAGCTC	1 cut(s)	409
Psp6I	CCWGG	3 cut(s)	24, 329, 738
PspGI	CCWGG	3 cut(s)	24, 329, 738
PspN4I	GGNNCC	5 cut(s)	9, 22, 222, 229, 737
PspPI	GGNCC	3 cut(s)	20, 220, 723
PspXI	VCTCGAGB	1 cut(s)	309
PstI	CTGCAG	2 cut(s)	273, 835
PstNI	CAGNNNCTG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	703
RsaI	GTAC	1 cut(s)	453
RsaNI	GTAC	1 cut(s)	452
SacI	GAGCTC	1 cut(s)	409
SaqAI	TTAA	7 cut(s)	315, 375, 435, 465, 615, 653, 806
Sau3AI	GATC	2 cut(s)	364, 703
Sau96I	GGNCC	3 cut(s)	20, 220, 723
ScaI	AGTACT	1 cut(s)	453
ScrFI	CCNGG	4 cut(s)	26, 225, 331, 740
SduI	GDGCHC	2 cut(s)	159, 409
SfaNI	GCATC	2 cut(s)	302, 316
SfcI	CTRYAG	2 cut(s)	269, 831
Sfr274I	CTCGAG	1 cut(s)	309
SinI	GGWCC	1 cut(s)	220
SlaI	CTCGAG	1 cut(s)	309
SmlI	CTYRAG	2 cut(s)	309, 408
SmoI	CTYRAG	2 cut(s)	309, 408
Sse9I	AATT	3 cut(s)	336, 655, 800
SsiI	CCGC	9 cut(s)	5, 57, 108, 128, 136, 234, 459, 513, 621
SspI	AATATT	2 cut(s)	359, 559
SspMI	CTAG	1 cut(s)	516
SstI	GAGCTC	1 cut(s)	409
StyD4I	CCNGG	4 cut(s)	24, 223, 329, 738
TaaI	ACNGT	3 cut(s)	591, 636, 785
TaiI	ACGT	1 cut(s)	71
TaqI	TCGA	5 cut(s)	74, 87, 153, 310, 672
TasI	AATT	3 cut(s)	336, 655, 800
TatI	WGTACW	1 cut(s)	451
TauI	GCSGC	5 cut(s)	8, 59, 237, 515, 623
TfiI	GAWTC	3 cut(s)	14, 572, 761
Tru1I	TTAA	7 cut(s)	315, 375, 435, 465, 615, 653, 806
Tru9I	TTAA	7 cut(s)	315, 375, 435, 465, 615, 653, 806
TscAI	CASTG	1 cut(s)	639
TseFI	GTSAC	2 cut(s)	45, 779
TseI	GCWGC	6 cut(s)	271, 509, 601, 629, 676, 830
Tsp45I	GTSAC	2 cut(s)	45, 779
TspGWI	ACGGA	3 cut(s)	64, 92, 551
TspRI	CASTG	1 cut(s)	639
VpaK11BI	GGWCC	1 cut(s)	220
XceI	RCATGY	1 cut(s)	747
XhoI	CTCGAG	1 cut(s)	309
XmiI	GTMKAC	1 cut(s)	399
XspI	CTAG	1 cut(s)	516
ZrmI	AGTACT	1 cut(s)	453
Zsp2I	ATGCAT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.