Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009737

Physical Location & Seq

Genomic Coordinates Reverse (-)

35748847 .. 35758628

Gene Structure 9782 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00312630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCCGGTTTGCACCGCCGCCCGAGACGTTATTCTCGGGTTGGATAGTGATTGCCTCACACATGGTGTCTTGCGCCTCCCATATCATCTTCTCGAACCGTGCCCAGACGGAGGTCGGCAACTACGACTCGCGGATGAAAGACTCAAGCTTTTCCATCTCCGGCATCTCTTTCTCGATGACGGCGCATTGAGTGAGGGAGGGCAGCAGGCGCTGCTGCTCTCAAGAATGTCAAGAGGCATGGATGTTCTTACAGTTCCGTTTACCATGGGCTTTCCAAAGTACTCATTGCATATAAACTGTGGTGTGAGAGCAACCACCATTGGAGACATCAAATTCGAAGATGATACATATCTTGGAGAAGTTTCAAAAGGTGGTGGAGGTGGATGGCAAGGATGCTTGGAATGGAGGATAATCATGGCTATGGGAGAGGATAATGCTCACGGCTTCAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

16.56

Weight (kDa)

5.6

Isoelectric Point (pI)

46.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009737)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0159391 RchiOBHm_Chr3g0487301
rosa_laevigata	RLG00000011507 RLG00000029402
rosa_roxburghii	Rroxscaffold_4G00312630 Rroxscaffold_7G00166790 Rroxscaffold_7G00169590 Rroxscaffold_7G00206080
rosa_rugosa	Rorug06G0002000
rosa_samantha	Rh1AG200100 Rh1AG205000 Rh1AG242200 Rh1CG185000 Rh2BG555400 Rh3AG249400 Rh4AG107400 Rh4CG107100 Rh6AG218000 Rh6DG091600 Rh7CG262100 Rh7DG252700
rosa_wichuraiana	Rw1G021230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	131
AciI	CCGC	3 cut(s)	15, 18, 131
AcsI	RAATTY	1 cut(s)	332
AdeI	CACNNNGTG	1 cut(s)	65
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	1 cut(s)	110
AgsI	TTSAA	2 cut(s)	366, 448
AluBI	AGCT	1 cut(s)	148
AluI	AGCT	1 cut(s)	148
Alw26I	GTCTC	2 cut(s)	18, 318
AlwNI	CAGNNNCTG	1 cut(s)	211
Ama87I	CYCGRG	2 cut(s)	21, 35
ApeKI	GCWGC	3 cut(s)	202, 211, 214
ApoI	RAATTY	1 cut(s)	332
ArsI	GACNNNNNNTTYG	2 cut(s)	317, 349
AspLEI	GCGC	3 cut(s)	75, 185, 211
AsuII	TTCGAA	1 cut(s)	336
AvaI	CYCGRG	2 cut(s)	21, 35
BaeGI	GKGCMC	1 cut(s)	104
BbvI	GCAGC	3 cut(s)	198, 201, 214
BccI	CCATC	2 cut(s)	162, 378
BceAI	ACGGC	1 cut(s)	196
BcoDI	GTCTC	2 cut(s)	18, 318
BfoI	RGCGCY	1 cut(s)	212
BisI	GCNGC	4 cut(s)	18, 203, 212, 215
BlsI	GCNGC	4 cut(s)	19, 204, 213, 216
BmcAI	AGTACT	1 cut(s)	281
BmeT110I	CYCGRG	2 cut(s)	21, 35
BmsI	GCATC	2 cut(s)	172, 383
BoxI	GACNNNNGTC	1 cut(s)	111
Bpu14I	TTCGAA	1 cut(s)	336
BpuEI	CTTGAG	2 cut(s)	128, 205
BsaBI	GATNNNNATC	1 cut(s)	348
BsaJI	CCNNGG	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse118I	RCCGGY	1 cut(s)	4
Bse3DI	GCAATG	1 cut(s)	284
Bse8I	GATNNNNATC	1 cut(s)	348
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	4 cut(s)	139, 247, 389, 398
BseJI	GATNNNNATC	1 cut(s)	348
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseMI	GCAATG	1 cut(s)	284
BseSI	GKGCMC	1 cut(s)	104
BseXI	GCAGC	3 cut(s)	198, 201, 214
Bsh1236I	CGCG	1 cut(s)	131
BsiHKCI	CYCGRG	2 cut(s)	21, 35
BsiSI	CCGG	2 cut(s)	5, 160
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmAI	GTCTC	2 cut(s)	18, 318
BsmBI	CGTCTC	1 cut(s)	18
BsoBI	CYCGRG	2 cut(s)	21, 35
Bsp119I	TTCGAA	1 cut(s)	336
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	3 cut(s)	15, 18, 131
BspFNI	CGCG	1 cut(s)	131
BspT104I	TTCGAA	1 cut(s)	336
BsrDI	GCAATG	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	4
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	264
BssT1I	CCWWGG	1 cut(s)	264
Bst4CI	ACNGT	3 cut(s)	99, 253, 299
BstAPI	GCANNNNNTGC	1 cut(s)	211
BstBI	TTCGAA	1 cut(s)	336
BstC8I	GCNNGC	1 cut(s)	207
BstDSI	CCRYGG	1 cut(s)	264
BstF5I	GGATG	4 cut(s)	139, 247, 389, 398
BstFNI	CGCG	1 cut(s)	131
BstH2I	RGCGCY	1 cut(s)	212
BstHHI	GCGC	3 cut(s)	75, 185, 211
BstMAI	GTCTC	2 cut(s)	18, 318
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 211
BstPAI	GACNNNNGTC	1 cut(s)	111
BstSLI	GKGCMC	1 cut(s)	104
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	3 cut(s)	198, 201, 214
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	4 cut(s)	139, 247, 389, 398
Cac8I	GCNNGC	1 cut(s)	207
CaiI	CAGNNNCTG	1 cut(s)	211
CfoI	GCGC	3 cut(s)	75, 185, 211
Cfr10I	RCCGGY	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	4 cut(s)	62, 238, 265, 415
CviJI	RGCY	4 cut(s)	148, 270, 419, 444
CviKI_1	RGCY	4 cut(s)	148, 270, 419, 444
CviQI	GTAC	1 cut(s)	280
DraIII	CACNNNGTG	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	264
Eco88I	CYCGRG	2 cut(s)	21, 35
EcoT14I	CCWWGG	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	264
Esp3I	CGTCTC	1 cut(s)	18
FaeI	CATG	4 cut(s)	65, 241, 268, 418
FaiI	YATR	9 cut(s)	63, 82, 239, 266, 291, 293, 349, 416, 422
FatI	CATG	4 cut(s)	61, 237, 264, 414
Fnu4HI	GCNGC	4 cut(s)	18, 203, 212, 215
FokI	GGATG	4 cut(s)	146, 254, 396, 405
Fsp4HI	GCNGC	4 cut(s)	18, 203, 212, 215
GlaI	GCGC	3 cut(s)	74, 184, 210
GluI	GCNGC	4 cut(s)	18, 203, 212, 215
HaeII	RGCGCY	1 cut(s)	212
HapII	CCGG	2 cut(s)	5, 160
HhaI	GCGC	3 cut(s)	75, 185, 211
Hin1II	CATG	4 cut(s)	65, 241, 268, 418
Hin6I	GCGC	3 cut(s)	73, 183, 209
HinP1I	GCGC	3 cut(s)	73, 183, 209
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	2 cut(s)	126, 141
HpaII	CCGG	2 cut(s)	5, 160
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188III	TCNNGA	4 cut(s)	92, 173, 222, 231
Hpy8I	GTNNAC	1 cut(s)	261
HpyCH4III	ACNGT	3 cut(s)	99, 253, 299
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	2 cut(s)	12, 289
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 211
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	4 cut(s)	65, 241, 268, 418
HspAI	GCGC	3 cut(s)	73, 183, 209
LpnPI	CCDG	4 cut(s)	18, 117, 173, 191
Lsp1109I	GCAGC	3 cut(s)	198, 201, 214
LweI	GCATC	2 cut(s)	172, 383
MaeII	ACGT	1 cut(s)	27
MboII	GAAGA	2 cut(s)	80, 350
MhlI	GDGCHC	1 cut(s)	104
MluCI	AATT	1 cut(s)	332
MlyI	GAGTC	2 cut(s)	120, 135
MmeI	TCCRAC	1 cut(s)	21
MnlI	CCTC	9 cut(s)	65, 86, 104, 187, 191, 227, 371, 399, 421
MslI	CAYNNNNRTG	1 cut(s)	419
MspI	CCGG	2 cut(s)	5, 160
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	2 cut(s)	208, 211
NcoI	CCATGG	1 cut(s)	264
NlaIII	CATG	4 cut(s)	65, 241, 268, 418
NspV	TTCGAA	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	1 cut(s)	121
PkrI	GCNGC	4 cut(s)	19, 204, 213, 216
PleI	GAGTC	2 cut(s)	120, 135
PpsI	GAGTC	2 cut(s)	120, 135
PshAI	GACNNNNGTC	1 cut(s)	111
PstNI	CAGNNNCTG	1 cut(s)	211
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
RseI	CAYNNNNRTG	1 cut(s)	419
SatI	GCNGC	4 cut(s)	18, 203, 212, 215
ScaI	AGTACT	1 cut(s)	281
SchI	GAGTC	2 cut(s)	120, 135
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	5 cut(s)	30, 115, 150, 373, 382
SfaNI	GCATC	2 cut(s)	172, 383
SfuI	TTCGAA	1 cut(s)	336
SmiMI	CAYNNNNRTG	1 cut(s)	419
SmlI	CTYRAG	2 cut(s)	143, 220
SmoI	CTYRAG	2 cut(s)	143, 220
Sse9I	AATT	1 cut(s)	332
SsiI	CCGC	3 cut(s)	15, 18, 131
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	3 cut(s)	99, 253, 299
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	3 cut(s)	93, 174, 336
TasI	AATT	1 cut(s)	332
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	1 cut(s)	20
TseI	GCWGC	3 cut(s)	202, 211, 214
TspDTI	ATGAA	1 cut(s)	150
TspGWI	ACGGA	2 cut(s)	123, 246
XapI	RAATTY	1 cut(s)	332
ZrmI	AGTACT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.