Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0009737

Physical Location & Seq

Genomic Coordinates Reverse (-)

19920717 .. 19929050

Gene Structure 8334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG107100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTCTTGTCCCACCCATTGCGATCCTATCGGTACTGCAATTGACCCTTCCCTCGAGCAACCTCCACCGGAGGACGCACTAAAGAGAGAGATCAGAGATCTGAAAATGGAGGCTGTGCGGGAGATTGAGAGCCAGAGAGGAATCAGTTATAAGAAGCCTTCATCAACGCGATCAACAAAGTCTATGCTGGCTTCCTCTCCGCATTGGACACTAACTCTATCACCAAGAATAGCTGGCGGGCGGTATGAATCAAGGTTTCGTGTTGGTGAAGTGACTTGTTTAGATGCAGCTGATCTGCCTCTTCTTCATTTATCACTGAAATCACCATCTATGACTCTTGAGTACTCATTGCATATAAACTGTGGTGTGAGAGCAACCACCGTTGGAGACATCAAATTCGAAGATGATACAGATCTTGGAGGTGGAGCAAAATTTGTTGATGACTACGTACATAGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000177 GO:0000178 GO:0000957 GO:0000958 GO:0000959 GO:0000960 GO:0000962 GO:0000963 GO:0000965 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007005 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009653 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0010941 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019439 GO:0023051 GO:0023056 GO:0030307 GO:0031123 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0032392 GO:0032502 GO:0032508 GO:0032989 GO:0032990 GO:0032991 GO:0034458 GO:0034641 GO:0034655 GO:0035945 GO:0035946 GO:0040008 GO:0042623 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043954 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045025 GO:0045927 GO:0045935 GO:0046483 GO:0046700 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0060548 GO:0065007 GO:0070013 GO:0070035 GO:0070584 GO:0070827 GO:0071025 GO:0071026 GO:0071103 GO:0071704 GO:0071840 GO:0080036 GO:0080038 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098798 GO:0140053 GO:0140097 GO:0140098 GO:1901000 GO:1901002 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1902584 GO:1905354 GO:2000070 GO:2000827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SUV3_C

Protein Analysis

153

Amino Acids

16.85

Weight (kDa)

5.94

Isoelectric Point (pI)

53.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009737)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0159391 RchiOBHm_Chr3g0487301
rosa_laevigata	RLG00000011507 RLG00000029402
rosa_roxburghii	Rroxscaffold_4G00312630 Rroxscaffold_7G00166790 Rroxscaffold_7G00169590 Rroxscaffold_7G00206080
rosa_rugosa	Rorug06G0002000
rosa_samantha	Rh1AG200100 Rh1AG205000 Rh1AG242200 Rh1CG185000 Rh2BG555400 Rh3AG249400 Rh4AG107400 Rh4CG107100 Rh6AG218000 Rh6DG091600 Rh7CG262100 Rh7DG252700
rosa_wichuraiana	Rw1G021230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	150
AccII	CGCG	1 cut(s)	169
AciI	CCGC	4 cut(s)	118, 200, 237, 241
AclWI	GGATC	1 cut(s)	17
AcsI	RAATTY	2 cut(s)	395, 431
AfaI	GTAC	3 cut(s)	34, 344, 450
AluBI	AGCT	2 cut(s)	233, 290
AluI	AGCT	2 cut(s)	233, 290
Alw26I	GTCTC	1 cut(s)	381
AlwI	GGATC	1 cut(s)	17
Ama87I	CYCGRG	1 cut(s)	53
ApeKI	GCWGC	1 cut(s)	287
ApoI	RAATTY	2 cut(s)	395, 431
ArsI	GACNNNNNNTTYG	2 cut(s)	380, 412
AsuHPI	GGTGA	3 cut(s)	213, 278, 315
AsuII	TTCGAA	1 cut(s)	399
AvaI	CYCGRG	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	299
BccI	CCATC	1 cut(s)	334
BcoDI	GTCTC	1 cut(s)	381
BglII	AGATCT	2 cut(s)	97, 412
BisI	GCNGC	1 cut(s)	288
BlsI	GCNGC	1 cut(s)	289
BmcAI	AGTACT	1 cut(s)	344
BmeT110I	CYCGRG	1 cut(s)	53
BmsI	GCATC	1 cut(s)	274
Bpu14I	TTCGAA	1 cut(s)	399
BpuEI	CTTGAG	1 cut(s)	359
BsaAI	YACGTR	1 cut(s)	448
BsaBI	GATNNNNATC	1 cut(s)	411
BsaWI	WCCGGW	1 cut(s)	67
Bse3DI	GCAATG	2 cut(s)	16, 347
Bse8I	GATNNNNATC	1 cut(s)	411
BseJI	GATNNNNATC	1 cut(s)	411
BseMI	GCAATG	2 cut(s)	16, 347
BseXI	GCAGC	1 cut(s)	299
Bsh1236I	CGCG	1 cut(s)	169
BsiHKCI	CYCGRG	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	68
BsmAI	GTCTC	1 cut(s)	381
BsoBI	CYCGRG	1 cut(s)	53
Bsp119I	TTCGAA	1 cut(s)	399
Bsp143I	GATC	6 cut(s)	22, 90, 97, 170, 292, 412
BspACI	CCGC	4 cut(s)	118, 200, 237, 241
BspFNI	CGCG	1 cut(s)	169
BspPI	GGATC	1 cut(s)	17
BspT104I	TTCGAA	1 cut(s)	399
BsrDI	GCAATG	2 cut(s)	16, 347
BssMI	GATC	6 cut(s)	22, 90, 97, 170, 292, 412
Bst4CI	ACNGT	2 cut(s)	362, 382
Bst6I	CTCTTC	1 cut(s)	306
BstBAI	YACGTR	1 cut(s)	448
BstBI	TTCGAA	1 cut(s)	399
BstC8I	GCNNGC	3 cut(s)	189, 235, 239
BstFNI	CGCG	1 cut(s)	169
BstKTI	GATC	6 cut(s)	25, 93, 100, 173, 295, 415
BstMAI	GTCTC	1 cut(s)	381
BstMBI	GATC	6 cut(s)	22, 90, 97, 170, 292, 412
BstSNI	TACGTA	1 cut(s)	448
BstUI	CGCG	1 cut(s)	169
BstV1I	GCAGC	1 cut(s)	299
BstX2I	RGATCY	2 cut(s)	97, 412
BstYI	RGATCY	2 cut(s)	97, 412
BtsIMutI	CAGTG	1 cut(s)	314
Cac8I	GCNNGC	3 cut(s)	189, 235, 239
CseI	GACGC	1 cut(s)	83
Csp6I	GTAC	3 cut(s)	33, 343, 449
CviJI	RGCY	6 cut(s)	113, 132, 157, 191, 233, 290
CviKI_1	RGCY	6 cut(s)	113, 132, 157, 191, 233, 290
CviQI	GTAC	3 cut(s)	33, 343, 449
DpnI	GATC	6 cut(s)	24, 92, 99, 172, 294, 414
DpnII	GATC	6 cut(s)	22, 90, 97, 170, 292, 412
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Eco105I	TACGTA	1 cut(s)	448
Eco88I	CYCGRG	1 cut(s)	53
FaiI	YATR	7 cut(s)	150, 185, 246, 332, 354, 356, 453
FauI	CCCGC	2 cut(s)	111, 230
Fnu4HI	GCNGC	1 cut(s)	288
Fsp4HI	GCNGC	1 cut(s)	288
GluI	GCNGC	1 cut(s)	288
HapII	CCGG	1 cut(s)	68
HgaI	GACGC	1 cut(s)	83
HinfI	GANTC	3 cut(s)	141, 248, 334
HpaII	CCGG	1 cut(s)	68
HphI	GGTGA	3 cut(s)	213, 278, 315
Hpy188I	TCNGA	2 cut(s)	95, 102
Hpy188III	TCNNGA	1 cut(s)	338
HpyAV	CCTTC	2 cut(s)	57, 168
HpyCH4III	ACNGT	2 cut(s)	362, 382
HpyCH4IV	ACGT	1 cut(s)	447
HpyCH4V	TGCA	3 cut(s)	38, 287, 352
HpySE526I	ACGT	1 cut(s)	447
Kzo9I	GATC	6 cut(s)	22, 90, 97, 170, 292, 412
LmnI	GCTCC	1 cut(s)	425
LpnPI	CCDG	4 cut(s)	81, 146, 173, 219
Lsp1109I	GCAGC	1 cut(s)	299
LweI	GCATC	1 cut(s)	274
MaeII	ACGT	1 cut(s)	447
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	6 cut(s)	24, 92, 99, 172, 294, 414
MboI	GATC	6 cut(s)	22, 90, 97, 170, 292, 412
MboII	GAAGA	3 cut(s)	293, 296, 413
MfeI	CAATTG	1 cut(s)	39
MflI	RGATCY	2 cut(s)	97, 412
MluCI	AATT	3 cut(s)	39, 395, 431
MlyI	GAGTC	1 cut(s)	328
MmeI	TCCRAC	1 cut(s)	364
MnlI	CCTC	8 cut(s)	62, 64, 72, 103, 131, 205, 309, 413
MspA1I	CMGCKG	1 cut(s)	290
MspI	CCGG	1 cut(s)	68
MunI	CAATTG	1 cut(s)	39
MvnI	CGCG	1 cut(s)	169
NdeII	GATC	6 cut(s)	22, 90, 97, 170, 292, 412
NmuCI	GTSAC	1 cut(s)	271
NspV	TTCGAA	1 cut(s)	399
PaeR7I	CTCGAG	1 cut(s)	53
PfeI	GAWTC	2 cut(s)	141, 248
PkrI	GCNGC	1 cut(s)	289
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
Ppu21I	YACGTR	1 cut(s)	448
PsiI	TTATAA	1 cut(s)	150
PspXI	VCTCGAGB	1 cut(s)	53
PsuI	RGATCY	2 cut(s)	97, 412
PvuII	CAGCTG	1 cut(s)	290
RsaI	GTAC	3 cut(s)	34, 344, 450
RsaNI	GTAC	3 cut(s)	33, 343, 449
SatI	GCNGC	1 cut(s)	288
Sau3AI	GATC	6 cut(s)	22, 90, 97, 170, 292, 412
ScaI	AGTACT	1 cut(s)	344
SchI	GAGTC	1 cut(s)	328
SetI	ASST	6 cut(s)	64, 235, 257, 292, 424, 450
SfaNI	GCATC	1 cut(s)	274
Sfr274I	CTCGAG	1 cut(s)	53
SfuI	TTCGAA	1 cut(s)	399
SlaI	CTCGAG	1 cut(s)	53
SmlI	CTYRAG	2 cut(s)	53, 338
SmoI	CTYRAG	2 cut(s)	53, 338
SnaBI	TACGTA	1 cut(s)	448
Sse9I	AATT	3 cut(s)	39, 395, 431
SsiI	CCGC	4 cut(s)	118, 200, 237, 241
TaaI	ACNGT	2 cut(s)	362, 382
TaiI	ACGT	1 cut(s)	450
TaqI	TCGA	2 cut(s)	54, 399
TasI	AATT	3 cut(s)	39, 395, 431
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	2 cut(s)	141, 248
TscAI	CASTG	1 cut(s)	321
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	1 cut(s)	287
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	3 cut(s)	150, 261, 296
TspRI	CASTG	1 cut(s)	321
XapI	RAATTY	2 cut(s)	395, 431
XhoI	CTCGAG	1 cut(s)	53
ZrmI	AGTACT	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.