Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0009737

Physical Location & Seq

Genomic Coordinates Reverse (-)

40535264 .. 40538385

Gene Structure 3122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG185000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGCCGGTTTCCGACGCTGCCCGTGACGTTATTCTCAGGTTGGATGGTGATTACCTCACACATGGTGTCTTGTGCCTCCCGTATCATCTTCTCAAACTGCGTCCAGACGGAGTTGGCGACGACGACTCACGGATGAAAGTTTTGAGCTTTTCTGTCTCCGGCATCTCTTTCTCGATGACGGCGCATCACGGAGTAAGGGAGGGGGTGTTCGTCATCGTCGGTGACAAGTCATGTGACCAGACTGGCATGAACATATATTCAAGAGCATCGGCTGAAGGGAAACGCGTTCAGATTGGAGGGCGCCAATACATTGATATACCTGGACAATATATCTATACACATCGCCTCAAAGGAGCCAAGGTCAATGATAAGACGAATGTTTTCGACGCTGGTTCTCAAAAGGTCGGAGGTCTATCACTCTCTCCTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009658 GO:0009668 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010027 GO:0010154 GO:0016043 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061024 GO:0061458 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21p

Protein Analysis

143

Amino Acids

15.51

Weight (kDa)

8.57

Isoelectric Point (pI)

30.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009737)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0159391 RchiOBHm_Chr3g0487301
rosa_laevigata	RLG00000011507 RLG00000029402
rosa_roxburghii	Rroxscaffold_4G00312630 Rroxscaffold_7G00166790 Rroxscaffold_7G00169590 Rroxscaffold_7G00206080
rosa_rugosa	Rorug06G0002000
rosa_samantha	Rh1AG200100 Rh1AG205000 Rh1AG242200 Rh1CG185000 Rh2BG555400 Rh3AG249400 Rh4AG107400 Rh4CG107100 Rh6AG218000 Rh6DG091600 Rh7CG262100 Rh7DG252700
rosa_wichuraiana	Rw1G021230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	300
AccII	CGCG	1 cut(s)	285
AcuI	CTGAAG	1 cut(s)	294
AcyI	GRCGYC	1 cut(s)	301
AdeI	CACNNNGTG	1 cut(s)	65
AflIII	ACRYGT	1 cut(s)	283
AgsI	TTSAA	1 cut(s)	261
AjnI	CCWGG	1 cut(s)	319
AloI	GAACNNNNNNTCC	2 cut(s)	191, 223
AluBI	AGCT	1 cut(s)	147
AluI	AGCT	1 cut(s)	147
Alw26I	GTCTC	1 cut(s)	160
ApeKI	GCWGC	1 cut(s)	17
Asp700I	GAANNNNTTC	1 cut(s)	380
AspLEI	GCGC	2 cut(s)	184, 303
AsuHPI	GGTGA	2 cut(s)	59, 233
BanI	GGYRCC	1 cut(s)	300
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	1 cut(s)	38
BceAI	ACGGC	1 cut(s)	195
BciT130I	CCWGG	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	160
BfoI	RGCGCY	1 cut(s)	304
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
Bme1390I	CCNGG	1 cut(s)	321
BmiI	GGNNCC	2 cut(s)	302, 355
BmrFI	CCNGG	1 cut(s)	321
BmsI	GCATC	3 cut(s)	171, 193, 275
BsaHI	GRCGYC	1 cut(s)	301
BsaJI	CCNNGG	1 cut(s)	357
BsaXI	ACNNNNNCTCC	4 cut(s)	191, 221, 345, 375
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	1 cut(s)	247
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	2 cut(s)	49, 138
BseMII	CTCAG	1 cut(s)	49
BseNI	ACTGG	1 cut(s)	247
BseRI	GAGGAG	1 cut(s)	414
BseXI	GCAGC	1 cut(s)	4
Bsh1236I	CGCG	1 cut(s)	285
BshNI	GGYRCC	1 cut(s)	300
BsiSI	CCGG	2 cut(s)	5, 159
BsmAI	GTCTC	1 cut(s)	160
BspCNI	CTCAG	1 cut(s)	48
BspFNI	CGCG	1 cut(s)	285
BspLI	GGNNCC	2 cut(s)	302, 355
BspT107I	GGYRCC	1 cut(s)	300
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	247
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	357
BssNI	GRCGYC	1 cut(s)	301
BssT1I	CCWWGG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	321
BstACI	GRCGYC	1 cut(s)	301
BstDEI	CTNAG	1 cut(s)	35
BstF5I	GGATG	2 cut(s)	49, 138
BstFNI	CGCG	1 cut(s)	285
BstH2I	RGCGCY	1 cut(s)	304
BstHHI	GCGC	2 cut(s)	184, 303
BstMAI	GTCTC	1 cut(s)	160
BstNI	CCWGG	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	319
BstUI	CGCG	1 cut(s)	285
BstV1I	GCAGC	1 cut(s)	4
BtgZI	GCGATG	1 cut(s)	326
BtsCI	GGATG	2 cut(s)	49, 138
CfoI	GCGC	2 cut(s)	184, 303
Cfr10I	RCCGGY	1 cut(s)	4
CseI	GACGC	3 cut(s)	23, 89, 395
CviAII	CATG	3 cut(s)	62, 231, 247
CviJI	RGCY	3 cut(s)	147, 272, 356
CviKI_1	RGCY	3 cut(s)	147, 272, 356
DdeI	CTNAG	1 cut(s)	35
DinI	GGCGCC	1 cut(s)	302
DraIII	CACNNNGTG	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	357
Eco57I	CTGAAG	1 cut(s)	294
EcoRII	CCWGG	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	357
EgeI	GGCGCC	1 cut(s)	302
EheI	GGCGCC	1 cut(s)	302
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	3 cut(s)	65, 234, 250
FaiI	YATR	9 cut(s)	63, 232, 248, 254, 256, 317, 330, 336, 430
FatI	CATG	3 cut(s)	61, 230, 246
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	2 cut(s)	56, 145
Fsp4HI	GCNGC	1 cut(s)	18
GlaI	GCGC	2 cut(s)	183, 302
GluI	GCNGC	1 cut(s)	18
HaeII	RGCGCY	1 cut(s)	304
HapII	CCGG	2 cut(s)	5, 159
HgaI	GACGC	3 cut(s)	23, 89, 395
HhaI	GCGC	2 cut(s)	184, 303
Hin1I	GRCGYC	1 cut(s)	301
Hin1II	CATG	3 cut(s)	65, 234, 250
Hin6I	GCGC	2 cut(s)	182, 301
HinP1I	GCGC	2 cut(s)	182, 301
HinfI	GANTC	1 cut(s)	125
HpaII	CCGG	2 cut(s)	5, 159
HphI	GGTGA	2 cut(s)	59, 233
Hpy188I	TCNGA	3 cut(s)	13, 291, 407
Hpy188III	TCNNGA	3 cut(s)	104, 172, 261
Hpy99I	CGWCG	5 cut(s)	17, 122, 125, 221, 389
HpyAV	CCTTC	1 cut(s)	269
HpyCH4IV	ACGT	1 cut(s)	27
HpyF3I	CTNAG	1 cut(s)	35
HpySE526I	ACGT	1 cut(s)	27
Hsp92I	GRCGYC	1 cut(s)	301
Hsp92II	CATG	3 cut(s)	65, 234, 250
HspAI	GCGC	2 cut(s)	182, 301
KasI	GGCGCC	1 cut(s)	300
LmnI	GCTCC	1 cut(s)	353
LpnPI	CCDG	9 cut(s)	18, 22, 117, 172, 228, 251, 306, 333, 375
Lsp1109I	GCAGC	1 cut(s)	4
LweI	GCATC	3 cut(s)	171, 193, 275
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	3 cut(s)	23, 221, 233
MboII	GAAGA	1 cut(s)	80
MluI	ACGCGT	1 cut(s)	283
Mly113I	GGCGCC	1 cut(s)	301
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	3 cut(s)	21, 36, 385
MnlI	CCTC	6 cut(s)	65, 86, 193, 290, 356, 401
MroXI	GAANNNNTTC	1 cut(s)	380
MspI	CCGG	2 cut(s)	5, 159
MspR9I	CCNGG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	321
MvnI	CGCG	1 cut(s)	285
NarI	GGCGCC	1 cut(s)	301
NlaIII	CATG	3 cut(s)	65, 234, 250
NlaIV	GGNNCC	2 cut(s)	302, 355
NmuCI	GTSAC	3 cut(s)	23, 221, 233
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	380
PkrI	GCNGC	1 cut(s)	19
PleI	GAGTC	1 cut(s)	119
PluTI	GGCGCC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	2 cut(s)	302, 355
SatI	GCNGC	1 cut(s)	18
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	321
SetI	ASST	8 cut(s)	30, 41, 57, 149, 322, 363, 405, 412
SfaNI	GCATC	3 cut(s)	171, 193, 275
SfoI	GGCGCC	1 cut(s)	302
SspDI	GGCGCC	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	319
StyI	CCWWGG	1 cut(s)	357
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	2 cut(s)	173, 384
TseFI	GTSAC	3 cut(s)	23, 221, 233
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	3 cut(s)	23, 221, 233
TspDTI	ATGAA	2 cut(s)	149, 263
TspGWI	ACGGA	3 cut(s)	123, 145, 204
XmnI	GAANNNNTTC	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.