Rh3AG249400

ATP-dependent RNA helicase SUPV3L1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0009737
Physical Location & Seq
Forward (+)
26827373 .. 26840117
12745 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG249400.1

Sequence Viewer

Length: 384 bp
ATGGAGGCTGTGCGGAGCCAGAGAGGAATCAGTTATAAGAAGCCTTCATCAACGCGATCAACAAAGTCTATGCTGGCTTCCTCTCCGCATTGGACACTAACTCTATCACCAAGAAGAGCTGGCGGGCGGTATGAATCAAGGTTTCGTGTTGGTGAAGTGACTTGTTTAGATGCAGCTGATCTGCCTCTTCTTCATTTATCACTGAAATCACCATCTATGACTCTTGAGTTCTTCCCTGGAGTGAGGAGCAACAAGATAAATGATAAAAGAGAGAAGAAACACAGCAGGAAGAATTCCTCTTATTGTTTCTTCAATTACTACTTCAACCACGTTCCTTTCTCAACATATACAAAAGAGGATCCGGATCCAAAGACTTTGACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000177 GO:0000178 GO:0000957 GO:0000958 GO:0000959 GO:0000960 GO:0000962 GO:0000963 GO:0000965 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007005 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009653 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0010941 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019439 GO:0023051 GO:0023056 GO:0030307 GO:0031123 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0032392 GO:0032502 GO:0032508 GO:0032989 GO:0032990 GO:0032991 GO:0034458 GO:0034641 GO:0034655 GO:0035945 GO:0035946 GO:0040008 GO:0042623 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043954 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045025 GO:0045927 GO:0045935 GO:0046483 GO:0046700 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0060548 GO:0065007 GO:0070013 GO:0070035 GO:0070584 GO:0070827 GO:0071025 GO:0071026 GO:0071103 GO:0071704 GO:0071840 GO:0080036 GO:0080038 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098798 GO:0140053 GO:0140097 GO:0140098 GO:1901000 GO:1901002 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1902584 GO:1905354 GO:2000070 GO:2000827
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helicase_C SUV3_C

Protein Analysis

127

Amino Acids

14.6

Weight (kDa)

9.96

Isoelectric Point (pI)

53.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 36
AccII CGCG 1 cut(s) 55
AccIII TCCGGA 1 cut(s) 361
AciI CCGC 4 cut(s) 13, 86, 123, 127
AclWI GGATC 4 cut(s) 353, 359, 366, 372
AcsI RAATTY 1 cut(s) 292
AgsI TTSAA 2 cut(s) 313, 325
AjnI CCWGG 1 cut(s) 235
AluBI AGCT 2 cut(s) 119, 176
AluI AGCT 2 cut(s) 119, 176
AlwI GGATC 4 cut(s) 353, 359, 366, 372
Aor13HI TCCGGA 1 cut(s) 361
ApeKI GCWGC 1 cut(s) 173
ApoI RAATTY 1 cut(s) 292
AsuHPI GGTGA 3 cut(s) 99, 164, 201
BamHI GGATCC 2 cut(s) 358, 364
BbvI GCAGC 1 cut(s) 185
BccI CCATC 1 cut(s) 220
BciT130I CCWGG 1 cut(s) 237
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
Bme1390I CCNGG 1 cut(s) 237
BmiI GGNNCC 3 cut(s) 17, 360, 366
BmrFI CCNGG 1 cut(s) 237
BmsI GCATC 1 cut(s) 160
BpmI CTGGAG 1 cut(s) 258
BpuEI CTTGAG 1 cut(s) 245
BsaBI GATNNNNATC 1 cut(s) 363
BsaJI CCNNGG 1 cut(s) 235
BsaWI WCCGGW 1 cut(s) 361
Bse8I GATNNNNATC 1 cut(s) 363
BseAI TCCGGA 1 cut(s) 361
BseBI CCWGG 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 235
BseJI GATNNNNATC 1 cut(s) 363
BseRI GAGGAG 1 cut(s) 259
BseXI GCAGC 1 cut(s) 185
Bsh1236I CGCG 1 cut(s) 55
BsiSI CCGG 1 cut(s) 362
Bsp13I TCCGGA 1 cut(s) 361
Bsp143I GATC 4 cut(s) 56, 178, 358, 364
BspACI CCGC 4 cut(s) 13, 86, 123, 127
BspEI TCCGGA 1 cut(s) 361
BspFNI CGCG 1 cut(s) 55
BspLI GGNNCC 3 cut(s) 17, 360, 366
BspPI GGATC 4 cut(s) 353, 359, 366, 372
BspQI GCTCTTC 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 235
BssMI GATC 4 cut(s) 56, 178, 358, 364
Bst2UI CCWGG 1 cut(s) 237
Bst6I CTCTTC 2 cut(s) 109, 192
BstC8I GCNNGC 3 cut(s) 75, 121, 125
BstFNI CGCG 1 cut(s) 55
BstKTI GATC 4 cut(s) 59, 181, 361, 367
BstMBI GATC 4 cut(s) 56, 178, 358, 364
BstNI CCWGG 1 cut(s) 237
BstSCI CCNGG 1 cut(s) 235
BstUI CGCG 1 cut(s) 55
BstV1I GCAGC 1 cut(s) 185
BstX2I RGATCY 2 cut(s) 358, 364
BstYI RGATCY 2 cut(s) 358, 364
BtsIMutI CAGTG 1 cut(s) 200
Cac8I GCNNGC 3 cut(s) 75, 121, 125
CviJI RGCY 6 cut(s) 8, 18, 43, 77, 119, 176
CviKI_1 RGCY 6 cut(s) 8, 18, 43, 77, 119, 176
DpnI GATC 4 cut(s) 58, 180, 360, 366
DpnII GATC 4 cut(s) 56, 178, 358, 364
Eam1104I CTCTTC 2 cut(s) 109, 192
EarI CTCTTC 2 cut(s) 109, 192
EcoRI GAATTC 1 cut(s) 292
EcoRII CCWGG 1 cut(s) 235
FaiI YATR 6 cut(s) 36, 71, 132, 218, 346, 348
FauI CCCGC 1 cut(s) 116
Fnu4HI GCNGC 1 cut(s) 174
Fsp4HI GCNGC 1 cut(s) 174
GluI GCNGC 1 cut(s) 174
GsuI CTGGAG 1 cut(s) 258
HapII CCGG 1 cut(s) 362
HinfI GANTC 3 cut(s) 27, 134, 220
HpaII CCGG 1 cut(s) 362
HphI GGTGA 3 cut(s) 99, 164, 201
Hpy188III TCNNGA 2 cut(s) 224, 362
HpyAV CCTTC 1 cut(s) 54
HpyCH4IV ACGT 2 cut(s) 330, 380
HpyCH4V TGCA 1 cut(s) 173
HpySE526I ACGT 2 cut(s) 330, 380
Kpn2I TCCGGA 1 cut(s) 361
Kzo9I GATC 4 cut(s) 56, 178, 358, 364
LguI GCTCTTC 1 cut(s) 109
LmnI GCTCC 2 cut(s) 15, 246
LpnPI CCDG 7 cut(s) 32, 59, 105, 222, 249, 271, 375
Lsp1109I GCAGC 1 cut(s) 185
LweI GCATC 1 cut(s) 160
MaeII ACGT 2 cut(s) 330, 380
MaeIII GTNAC 1 cut(s) 157
MalI GATC 4 cut(s) 58, 180, 360, 366
MboI GATC 4 cut(s) 56, 178, 358, 364
MboII GAAGA 7 cut(s) 126, 179, 182, 223, 286, 301, 301
MflI RGATCY 2 cut(s) 358, 364
MluCI AATT 2 cut(s) 292, 313
MlyI GAGTC 1 cut(s) 214
MnlI CCTC 6 cut(s) 17, 91, 195, 237, 307, 349
MroI TCCGGA 1 cut(s) 361
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 1 cut(s) 362
MspR9I CCNGG 1 cut(s) 237
MvaI CCWGG 1 cut(s) 237
MvnI CGCG 1 cut(s) 55
NdeII GATC 4 cut(s) 56, 178, 358, 364
NlaIV GGNNCC 3 cut(s) 17, 360, 366
NmuCI GTSAC 1 cut(s) 157
PciSI GCTCTTC 1 cut(s) 109
PfeI GAWTC 2 cut(s) 27, 134
PkrI GCNGC 1 cut(s) 175
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
PsiI TTATAA 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 235
PspGI CCWGG 1 cut(s) 235
PspN4I GGNNCC 3 cut(s) 17, 360, 366
PsuI RGATCY 2 cut(s) 358, 364
PvuII CAGCTG 1 cut(s) 176
SapI GCTCTTC 1 cut(s) 109
SatI GCNGC 1 cut(s) 174
Sau3AI GATC 4 cut(s) 56, 178, 358, 364
SchI GAGTC 1 cut(s) 214
ScrFI CCNGG 1 cut(s) 237
SetI ASST 5 cut(s) 121, 143, 178, 333, 383
SfaNI GCATC 1 cut(s) 160
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 2 cut(s) 292, 313
SsiI CCGC 4 cut(s) 13, 86, 123, 127
StyD4I CCNGG 1 cut(s) 235
TaiI ACGT 2 cut(s) 333, 383
TasI AATT 2 cut(s) 292, 313
TfiI GAWTC 2 cut(s) 27, 134
TscAI CASTG 1 cut(s) 207
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 1 cut(s) 173
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 3 cut(s) 36, 147, 182
TspRI CASTG 1 cut(s) 207
XapI RAATTY 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.