Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0009737

Physical Location & Seq

Genomic Coordinates Forward (+)

45395849 .. 45396518

Gene Structure 670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G021230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGTGATTGCCTCATACATGGTGTCTTGCGCCTCCCTTATCATCTTCTCGAACAGTGCCCAGACGGAGGTCGGTGACGACGACTCAAGGATGAAAGACTCGAGATTTTCATTCTCCGGCATCTCTTTCTCAATGACGGCGCATTGCGGAGTGAGGGAGGGGCAGCAGCTGCTGCTGCTCTCAAGGTTGGTAAGAGGCTTAAAAATGCAGGGAAGCTTATCACAGTATATCCTTTCTCAATTACTTCCCTTAAAAATTATTTTCCTCTATGAAACTGATGAACATATACACACTAAGGTGAGTTGTAGCATTAATTTATGTGTGGTGGGGTGGGGTTGTAGATTTTTGCATATGAAATCACACCTGGTTGAGTTGCAGCATTATTTGGAGCAAGGGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

14.97

Weight (kDa)

6.99

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009737)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0159391 RchiOBHm_Chr3g0487301
rosa_laevigata	RLG00000011507 RLG00000029402
rosa_roxburghii	Rroxscaffold_4G00312630 Rroxscaffold_7G00166790 Rroxscaffold_7G00169590 Rroxscaffold_7G00206080
rosa_rugosa	Rorug06G0002000
rosa_samantha	Rh1AG200100 Rh1AG205000 Rh1AG242200 Rh1CG185000 Rh2BG555400 Rh3AG249400 Rh4AG107400 Rh4CG107100 Rh6AG218000 Rh6DG091600 Rh7CG262100 Rh7DG252700
rosa_wichuraiana	Rw1G021230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	147
AfiI	CCNNNNNNNGG	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	363
AleI	CACNNNNGTG	1 cut(s)	296
AluBI	AGCT	2 cut(s)	169, 216
AluI	AGCT	2 cut(s)	169, 216
AlwNI	CAGNNNCTG	2 cut(s)	169, 172
Ama87I	CYCGRG	1 cut(s)	100
ApeKI	GCWGC	6 cut(s)	163, 166, 169, 172, 175, 376
AseI	ATTAAT	1 cut(s)	312
AspLEI	GCGC	2 cut(s)	32, 142
AsuHPI	GGTGA	3 cut(s)	16, 86, 310
AvaI	CYCGRG	1 cut(s)	100
BaeGI	GKGCMC	1 cut(s)	61
BbvI	GCAGC	6 cut(s)	156, 159, 162, 175, 178, 388
BceAI	ACGGC	1 cut(s)	153
BciT130I	CCWGG	1 cut(s)	365
BisI	GCNGC	6 cut(s)	164, 167, 170, 173, 176, 377
BlsI	GCNGC	6 cut(s)	165, 168, 171, 174, 177, 378
Bme1390I	CCNGG	1 cut(s)	365
BmeT110I	CYCGRG	1 cut(s)	100
BmrFI	CCNGG	1 cut(s)	365
BmsI	GCATC	1 cut(s)	129
BoxI	GACNNNNGTC	1 cut(s)	68
BpuEI	CTTGAG	2 cut(s)	70, 166
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse3DI	GCAATG	1 cut(s)	142
BseBI	CCWGG	1 cut(s)	365
BseGI	GGATG	1 cut(s)	96
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMI	GCAATG	1 cut(s)	142
BseSI	GKGCMC	1 cut(s)	61
BseXI	GCAGC	6 cut(s)	156, 159, 162, 175, 178, 388
BsiHKCI	CYCGRG	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	117
BslI	CCNNNNNNNGG	1 cut(s)	67
BsoBI	CYCGRG	1 cut(s)	100
Bsp1286I	GDGCHC	1 cut(s)	61
BspACI	CCGC	1 cut(s)	147
BsrDI	GCAATG	1 cut(s)	142
Bst2UI	CCWGG	1 cut(s)	365
Bst4CI	ACNGT	2 cut(s)	56, 225
BstAPI	GCANNNNNTGC	2 cut(s)	169, 172
BstDEI	CTNAG	1 cut(s)	294
BstF5I	GGATG	1 cut(s)	96
BstHHI	GCGC	2 cut(s)	32, 142
BstMWI	GCNNNNNNNGC	3 cut(s)	169, 172, 175
BstNI	CCWGG	1 cut(s)	365
BstPAI	GACNNNNGTC	1 cut(s)	68
BstSCI	CCNGG	1 cut(s)	363
BstSLI	GKGCMC	1 cut(s)	61
BstV1I	GCAGC	6 cut(s)	156, 159, 162, 175, 178, 388
BtsCI	GGATG	1 cut(s)	96
BtsIMutI	CAGTG	1 cut(s)	61
CaiI	CAGNNNCTG	2 cut(s)	169, 172
CfoI	GCGC	2 cut(s)	32, 142
CsiI	ACCWGGT	1 cut(s)	363
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	4 cut(s)	169, 198, 216, 397
CviKI_1	RGCY	4 cut(s)	169, 198, 216, 397
DdeI	CTNAG	1 cut(s)	294
Eco88I	CYCGRG	1 cut(s)	100
EcoRII	CCWGG	1 cut(s)	363
FaeI	CATG	1 cut(s)	22
FatI	CATG	1 cut(s)	18
FauNDI	CATATG	1 cut(s)	351
Fnu4HI	GCNGC	6 cut(s)	164, 167, 170, 173, 176, 377
FokI	GGATG	1 cut(s)	103
Fsp4HI	GCNGC	6 cut(s)	164, 167, 170, 173, 176, 377
GlaI	GCGC	2 cut(s)	31, 141
GluI	GCNGC	6 cut(s)	164, 167, 170, 173, 176, 377
HapII	CCGG	1 cut(s)	117
HhaI	GCGC	2 cut(s)	32, 142
Hin1II	CATG	1 cut(s)	22
Hin6I	GCGC	2 cut(s)	30, 140
HinP1I	GCGC	2 cut(s)	30, 140
HindIII	AAGCTT	1 cut(s)	214
HinfI	GANTC	2 cut(s)	83, 98
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	3 cut(s)	16, 86, 310
Hpy188III	TCNNGA	2 cut(s)	49, 102
Hpy99I	CGWCG	1 cut(s)	83
HpyCH4III	ACNGT	2 cut(s)	56, 225
HpyCH4V	TGCA	3 cut(s)	208, 349, 376
HpyF10VI	GCNNNNNNNGC	3 cut(s)	169, 172, 175
HpyF3I	CTNAG	1 cut(s)	294
Hsp92II	CATG	1 cut(s)	22
HspAI	GCGC	2 cut(s)	30, 140
LmnI	GCTCC	1 cut(s)	388
LpnPI	CCDG	5 cut(s)	74, 130, 194, 350, 377
Lsp1109I	GCAGC	6 cut(s)	156, 159, 162, 175, 178, 388
LweI	GCATC	1 cut(s)	129
MabI	ACCWGGT	1 cut(s)	363
MaeIII	GTNAC	1 cut(s)	74
MboII	GAAGA	1 cut(s)	37
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	3 cut(s)	239, 255, 313
MlyI	GAGTC	2 cut(s)	77, 92
MnlI	CCTC	7 cut(s)	22, 43, 61, 147, 151, 188, 275
MseI	TTAA	3 cut(s)	200, 251, 312
MslI	CAYNNNNRTG	1 cut(s)	296
MspA1I	CMGCKG	1 cut(s)	169
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	1 cut(s)	365
MvaI	CCWGG	1 cut(s)	365
MwoI	GCNNNNNNNGC	3 cut(s)	169, 172, 175
NdeI	CATATG	1 cut(s)	351
NlaIII	CATG	1 cut(s)	22
NmuCI	GTSAC	1 cut(s)	74
OliI	CACNNNNGTG	1 cut(s)	296
PaeR7I	CTCGAG	1 cut(s)	100
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PkrI	GCNGC	6 cut(s)	165, 168, 171, 174, 177, 378
PleI	GAGTC	2 cut(s)	77, 92
PpsI	GAGTC	2 cut(s)	77, 92
PshAI	GACNNNNGTC	1 cut(s)	68
PshBI	ATTAAT	1 cut(s)	312
Psp6I	CCWGG	1 cut(s)	363
PspGI	CCWGG	1 cut(s)	363
PstNI	CAGNNNCTG	2 cut(s)	169, 172
PvuII	CAGCTG	1 cut(s)	169
RseI	CAYNNNNRTG	1 cut(s)	296
SaqAI	TTAA	3 cut(s)	200, 251, 312
SatI	GCNGC	6 cut(s)	164, 167, 170, 173, 176, 377
SchI	GAGTC	2 cut(s)	77, 92
ScrFI	CCNGG	1 cut(s)	365
SduI	GDGCHC	1 cut(s)	61
SetI	ASST	6 cut(s)	72, 171, 188, 218, 300, 366
SexAI	ACCWGGT	1 cut(s)	363
SfaNI	GCATC	1 cut(s)	129
Sfr274I	CTCGAG	1 cut(s)	100
SlaI	CTCGAG	1 cut(s)	100
SmiMI	CAYNNNNRTG	1 cut(s)	296
SmlI	CTYRAG	3 cut(s)	85, 100, 181
SmoI	CTYRAG	3 cut(s)	85, 100, 181
Sse9I	AATT	3 cut(s)	239, 255, 313
SsiI	CCGC	1 cut(s)	147
StyD4I	CCNGG	1 cut(s)	363
TaaI	ACNGT	2 cut(s)	56, 225
TaqI	TCGA	2 cut(s)	50, 101
TasI	AATT	3 cut(s)	239, 255, 313
Tru1I	TTAA	3 cut(s)	200, 251, 312
Tru9I	TTAA	3 cut(s)	200, 251, 312
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	6 cut(s)	163, 166, 169, 172, 175, 376
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	5 cut(s)	99, 107, 285, 294, 368
TspGWI	ACGGA	1 cut(s)	80
TspRI	CASTG	1 cut(s)	61
VspI	ATTAAT	1 cut(s)	312
XhoI	CTCGAG	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.