Rh1AG205000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0009737
Physical Location & Seq
Forward (+)
38847087 .. 38863425
16339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG205000.1

Sequence Viewer

Length: 552 bp
ATGCCCGGGACGGAGGAACTGTACACAACCGCGATGACGACGGCGCAACCGGCATCAGGAACAAAGAAATCTGGGATTTTGAGCAACAAATGCCGGTTTCCAACGCTGCCCGAGACGTTATTCTCAGGTTGGATGGTGATTGCCTCACACATGGTGTCTTGCGCCGCCCATATCATCTTCTCGAACCGTGCCCAGACTGAGGTCGGCGACGACGACTCGTGGATGAAAGACTCGAGCTTTTCCGTCTCCGGCATCTCTTTCTCGATGACGGCGCATTGCGGAGTGAGGGAGGGGCAGCAGCTGCTGCTGCTCTCAAGGTTGAAGGAGCTTAGGTTGGCTCTGATCAAAATTCAAGCAGGTGAAAATCTTTTTCTCGATAGGGTTTATTTGGAGGTTCCAAATGGCGAAGAATTGGCAGAGGCACTTCTACCATCGTGCTTCAGATCACTAGATGGTGACGTCACCTTTTTTGTGCAGATATATGATGCAAGTTATCATGATTTTGTTGGATCATCATCCTACTTATTATTAATTCTATCATCAGTTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

20.1

Weight (kDa)

5.0

Isoelectric Point (pI)

44.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 347
AatII GACGTC 1 cut(s) 462
Acc36I ACCTGC 1 cut(s) 347
AccII CGCG 1 cut(s) 32
AciI CCGC 3 cut(s) 30, 165, 279
AclWI GGATC 1 cut(s) 517
AcsI RAATTY 1 cut(s) 348
AcuI CTGAAG 1 cut(s) 424
AcyI GRCGYC 1 cut(s) 459
AdeI CACNNNGTG 1 cut(s) 154
AfaI GTAC 1 cut(s) 23
AfiI CCNNNNNNNGG 2 cut(s) 56, 199
AgsI TTSAA 2 cut(s) 322, 353
AluBI AGCT 3 cut(s) 237, 301, 328
AluI AGCT 3 cut(s) 237, 301, 328
Alw26I GTCTC 2 cut(s) 107, 250
AlwI GGATC 1 cut(s) 517
AlwNI CAGNNNCTG 2 cut(s) 301, 304
Ama87I CYCGRG 3 cut(s) 5, 110, 232
ApeKI GCWGC 6 cut(s) 106, 295, 298, 301, 304, 307
ApoI RAATTY 1 cut(s) 348
AseI ATTAAT 1 cut(s) 530
AspLEI GCGC 3 cut(s) 46, 164, 274
AsuC2I CCSGG 2 cut(s) 6, 7
AsuHPI GGTGA 4 cut(s) 148, 371, 454, 467
AvaI CYCGRG 3 cut(s) 5, 110, 232
BaeGI GKGCMC 1 cut(s) 193
BauI CACGAG 1 cut(s) 217
BbvI GCAGC 6 cut(s) 93, 288, 291, 294, 307, 310
BccI CCATC 3 cut(s) 127, 439, 446
BceAI ACGGC 2 cut(s) 57, 285
BclI TGATCA 1 cut(s) 342
BcnI CCSGG 2 cut(s) 6, 7
BcoDI GTCTC 2 cut(s) 107, 250
BfaI CTAG 1 cut(s) 449
BfuAI ACCTGC 1 cut(s) 347
BisI GCNGC 7 cut(s) 107, 165, 296, 299, 302, 305, 308
BlsI GCNGC 7 cut(s) 108, 166, 297, 300, 303, 306, 309
Bme1390I CCNGG 2 cut(s) 6, 7
BmeT110I CYCGRG 3 cut(s) 5, 110, 232
BmiI GGNNCC 1 cut(s) 396
BmrFI CCNGG 2 cut(s) 6, 7
BmsI GCATC 3 cut(s) 62, 261, 475
BoxI GACNNNNGTC 1 cut(s) 200
Bpu10I CCTNAGC 1 cut(s) 329
BpuEI CTTGAG 1 cut(s) 298
BpuMI CCSGG 2 cut(s) 6, 7
BsaBI GATNNNNATC 1 cut(s) 514
BsaHI GRCGYC 1 cut(s) 459
BsaJI CCNNGG 1 cut(s) 5
BsaXI ACNNNNNCTCC 4 cut(s) 5, 35, 317, 347
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 199
Bse118I RCCGGY 2 cut(s) 49, 93
Bse3DI GCAATG 1 cut(s) 274
Bse8I GATNNNNATC 1 cut(s) 514
BseDI CCNNGG 1 cut(s) 5
BseGI GGATG 3 cut(s) 138, 228, 515
BseJI GATNNNNATC 1 cut(s) 514
BseLI CCNNNNNNNGG 2 cut(s) 56, 199
BseMI GCAATG 1 cut(s) 274
BseMII CTCAG 2 cut(s) 138, 189
BseSI GKGCMC 1 cut(s) 193
BseXI GCAGC 6 cut(s) 93, 288, 291, 294, 307, 310
BsgI GTGCAG 1 cut(s) 494
Bsh1236I CGCG 1 cut(s) 32
BsiHKCI CYCGRG 3 cut(s) 5, 110, 232
BsiSI CCGG 4 cut(s) 6, 50, 94, 249
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 2 cut(s) 56, 199
BsmAI GTCTC 2 cut(s) 107, 250
BsmBI CGTCTC 2 cut(s) 107, 250
BsmFI GGGAC 1 cut(s) 22
BsoBI CYCGRG 3 cut(s) 5, 110, 232
Bsp1286I GDGCHC 1 cut(s) 193
Bsp1407I TGTACA 1 cut(s) 21
Bsp143I GATC 3 cut(s) 342, 443, 509
BspACI CCGC 3 cut(s) 30, 165, 279
BspCNI CTCAG 2 cut(s) 137, 190
BspFNI CGCG 1 cut(s) 32
BspHI TCATGA 1 cut(s) 496
BspLI GGNNCC 1 cut(s) 396
BspMI ACCTGC 1 cut(s) 347
BspPI GGATC 1 cut(s) 517
BsrDI GCAATG 1 cut(s) 274
BsrFI RCCGGY 2 cut(s) 49, 93
BsrGI TGTACA 1 cut(s) 21
BssAI RCCGGY 2 cut(s) 49, 93
BssECI CCNNGG 1 cut(s) 5
BssMI GATC 3 cut(s) 342, 443, 509
BssNI GRCGYC 1 cut(s) 459
BssSI CACGAG 1 cut(s) 217
Bst2BI CACGAG 1 cut(s) 217
Bst4CI ACNGT 2 cut(s) 21, 188
BstACI GRCGYC 1 cut(s) 459
BstAPI GCANNNNNTGC 3 cut(s) 90, 301, 304
BstAUI TGTACA 1 cut(s) 21
BstDEI CTNAG 3 cut(s) 124, 198, 329
BstF5I GGATG 3 cut(s) 138, 228, 515
BstFNI CGCG 1 cut(s) 32
BstHHI GCGC 3 cut(s) 46, 164, 274
BstKTI GATC 3 cut(s) 345, 446, 512
BstMAI GTCTC 2 cut(s) 107, 250
BstMBI GATC 3 cut(s) 342, 443, 509
BstMWI GCNNNNNNNGC 5 cut(s) 50, 90, 301, 304, 307
BstPAI GACNNNNGTC 1 cut(s) 200
BstSCI CCNGG 2 cut(s) 4, 5
BstSLI GKGCMC 1 cut(s) 193
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 6 cut(s) 93, 288, 291, 294, 307, 310
BtgZI GCGATG 1 cut(s) 47
BtsCI GGATG 3 cut(s) 138, 228, 515
BveI ACCTGC 1 cut(s) 347
CaiI CAGNNNCTG 2 cut(s) 301, 304
CciI TCATGA 1 cut(s) 496
CfoI GCGC 3 cut(s) 46, 164, 274
Cfr10I RCCGGY 2 cut(s) 49, 93
Cfr9I CCCGGG 1 cut(s) 5
Csp6I GTAC 1 cut(s) 22
CviAII CATG 2 cut(s) 151, 497
CviJI RGCY 4 cut(s) 237, 301, 328, 338
CviKI_1 RGCY 4 cut(s) 237, 301, 328, 338
CviQI GTAC 1 cut(s) 22
DdeI CTNAG 3 cut(s) 124, 198, 329
DpnI GATC 3 cut(s) 344, 445, 511
DpnII GATC 3 cut(s) 342, 443, 509
DraIII CACNNNGTG 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 424
Eco88I CYCGRG 3 cut(s) 5, 110, 232
Esp3I CGTCTC 2 cut(s) 107, 250
FaeI CATG 2 cut(s) 154, 500
FaiI YATR 6 cut(s) 152, 171, 481, 483, 498, 550
FaqI GGGAC 1 cut(s) 22
FatI CATG 2 cut(s) 150, 496
FbaI TGATCA 1 cut(s) 342
Fnu4HI GCNGC 7 cut(s) 107, 165, 296, 299, 302, 305, 308
FokI GGATG 3 cut(s) 145, 235, 502
Fsp4HI GCNGC 7 cut(s) 107, 165, 296, 299, 302, 305, 308
FspBI CTAG 1 cut(s) 449
GlaI GCGC 3 cut(s) 45, 163, 273
GluI GCNGC 7 cut(s) 107, 165, 296, 299, 302, 305, 308
HapII CCGG 4 cut(s) 6, 50, 94, 249
HhaI GCGC 3 cut(s) 46, 164, 274
Hin1I GRCGYC 1 cut(s) 459
Hin1II CATG 2 cut(s) 154, 500
Hin6I GCGC 3 cut(s) 44, 162, 272
HinP1I GCGC 3 cut(s) 44, 162, 272
HinfI GANTC 2 cut(s) 215, 230
HpaII CCGG 4 cut(s) 6, 50, 94, 249
HphI GGTGA 4 cut(s) 148, 371, 454, 467
Hpy166II GTNNAC 1 cut(s) 24
Hpy188I TCNGA 2 cut(s) 342, 443
Hpy188III TCNNGA 5 cut(s) 57, 181, 262, 374, 497
Hpy8I GTNNAC 1 cut(s) 24
Hpy99I CGWCG 3 cut(s) 43, 212, 215
HpyAV CCTTC 1 cut(s) 316
HpyCH4III ACNGT 2 cut(s) 21, 188
HpyCH4IV ACGT 2 cut(s) 116, 459
HpyCH4V TGCA 2 cut(s) 475, 488
HpyF10VI GCNNNNNNNGC 5 cut(s) 50, 90, 301, 304, 307
HpyF3I CTNAG 3 cut(s) 124, 198, 329
HpySE526I ACGT 2 cut(s) 116, 459
Hsp92I GRCGYC 1 cut(s) 459
Hsp92II CATG 2 cut(s) 154, 500
HspAI GCGC 3 cut(s) 44, 162, 272
Ksp22I TGATCA 1 cut(s) 342
Kzo9I GATC 3 cut(s) 342, 443, 509
LmnI GCTCC 1 cut(s) 325
LpnPI CCDG 9 cut(s) 19, 42, 57, 63, 107, 111, 206, 262, 342
Lsp1109I GCAGC 6 cut(s) 93, 288, 291, 294, 307, 310
LweI GCATC 3 cut(s) 62, 261, 475
MaeI CTAG 1 cut(s) 449
MaeII ACGT 2 cut(s) 116, 459
MaeIII GTNAC 2 cut(s) 455, 460
MalI GATC 3 cut(s) 344, 445, 511
MboI GATC 3 cut(s) 342, 443, 509
MboII GAAGA 2 cut(s) 169, 419
MhlI GDGCHC 1 cut(s) 193
MluCI AATT 3 cut(s) 348, 410, 531
MlyI GAGTC 2 cut(s) 209, 224
MmeI TCCRAC 3 cut(s) 110, 125, 487
MnlI CCTC 7 cut(s) 7, 154, 193, 279, 283, 385, 412
MseI TTAA 1 cut(s) 530
MspA1I CMGCKG 1 cut(s) 301
MspI CCGG 4 cut(s) 6, 50, 94, 249
MspR9I CCNGG 2 cut(s) 6, 7
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 5 cut(s) 50, 90, 301, 304, 307
NciI CCSGG 2 cut(s) 6, 7
NdeII GATC 3 cut(s) 342, 443, 509
NlaIII CATG 2 cut(s) 154, 500
NlaIV GGNNCC 1 cut(s) 396
NmuCI GTSAC 2 cut(s) 455, 460
PaeR7I CTCGAG 1 cut(s) 232
PagI TCATGA 1 cut(s) 496
PaqCI CACCTGC 1 cut(s) 347
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PkrI GCNGC 7 cut(s) 108, 166, 297, 300, 303, 306, 309
PleI GAGTC 2 cut(s) 209, 224
PpsI GAGTC 2 cut(s) 209, 224
PshAI GACNNNNGTC 1 cut(s) 200
PshBI ATTAAT 1 cut(s) 530
PspN4I GGNNCC 1 cut(s) 396
PspXI VCTCGAGB 1 cut(s) 232
PstNI CAGNNNCTG 2 cut(s) 301, 304
PvuII CAGCTG 1 cut(s) 301
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
SaqAI TTAA 1 cut(s) 530
SatI GCNGC 7 cut(s) 107, 165, 296, 299, 302, 305, 308
Sau3AI GATC 3 cut(s) 342, 443, 509
SchI GAGTC 2 cut(s) 209, 224
ScrFI CCNGG 2 cut(s) 6, 7
SduI GDGCHC 1 cut(s) 193
SfaNI GCATC 3 cut(s) 62, 261, 475
Sfr274I CTCGAG 1 cut(s) 232
SlaI CTCGAG 1 cut(s) 232
SmaI CCCGGG 1 cut(s) 7
SmlI CTYRAG 2 cut(s) 232, 313
SmoI CTYRAG 2 cut(s) 232, 313
Sse9I AATT 3 cut(s) 348, 410, 531
SsiI CCGC 3 cut(s) 30, 165, 279
SspMI CTAG 1 cut(s) 449
StyD4I CCNGG 2 cut(s) 4, 5
TaaI ACNGT 2 cut(s) 21, 188
TaiI ACGT 2 cut(s) 119, 462
TaqI TCGA 4 cut(s) 182, 233, 263, 375
TasI AATT 3 cut(s) 348, 410, 531
TatI WGTACW 1 cut(s) 21
TauI GCSGC 1 cut(s) 167
Tru1I TTAA 1 cut(s) 530
Tru9I TTAA 1 cut(s) 530
TseFI GTSAC 2 cut(s) 455, 460
TseI GCWGC 6 cut(s) 106, 295, 298, 301, 304, 307
Tsp45I GTSAC 2 cut(s) 455, 460
TspDTI ATGAA 1 cut(s) 239
TspGWI ACGGA 2 cut(s) 26, 232
TspMI CCCGGG 1 cut(s) 5
VspI ATTAAT 1 cut(s) 530
XapI RAATTY 1 cut(s) 348
XhoI CTCGAG 1 cut(s) 232
XmaI CCCGGG 1 cut(s) 5
XspI CTAG 1 cut(s) 449
ZraI GACGTC 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.