Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0009737

Physical Location & Seq

Genomic Coordinates Reverse (-)

55746009 .. 55750834

Gene Structure 4826 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00206080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGGGTTCTTCCTGTTTAATTTCATTCATCTCCCTTCAAGCACTACGGGATCAACCATACCTATCAATGGGCAGAAACTCATGTATGAAGTCCACAAATCAAAAGGCTGAGCAGAGTAAGACAATGGTTCAAGAGAGATGTCGTGACATAAAAAAGTTAGATTTTGCAAAGAAGCATATAACAAACCACCATTGCTGCTCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000938 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005794 GO:0006810 GO:0006890 GO:0006950 GO:0006970 GO:0007009 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010256 GO:0010286 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032991 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps53_N

Protein Analysis

68

Amino Acids

7.75

Weight (kDa)

9.36

Isoelectric Point (pI)

54.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps53_N	PF04100	29 - 62	8.7e-09	Vps53, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009737)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0159391 RchiOBHm_Chr3g0487301
rosa_laevigata	RLG00000011507 RLG00000029402
rosa_roxburghii	Rroxscaffold_4G00312630 Rroxscaffold_7G00166790 Rroxscaffold_7G00169590 Rroxscaffold_7G00206080
rosa_rugosa	Rorug06G0002000
rosa_samantha	Rh1AG200100 Rh1AG205000 Rh1AG242200 Rh1CG185000 Rh2BG555400 Rh3AG249400 Rh4AG107400 Rh4CG107100 Rh6AG218000 Rh6DG091600 Rh7CG262100 Rh7DG252700
rosa_wichuraiana	Rw1G021230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	57
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	2 cut(s)	38, 131
AlwI	GGATC	1 cut(s)	57
ApeKI	GCWGC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	182
BisI	GCNGC	1 cut(s)	196
BlpI	GCTNAGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	197
Bpu1102I	GCTNAGC	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse3DI	GCAATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMI	GCAATG	1 cut(s)	190
BseMII	CTCAG	1 cut(s)	99
BseXI	GCAGC	1 cut(s)	182
BslI	CCNNNNNNNGG	1 cut(s)	67
Bsp143I	GATC	1 cut(s)	49
Bsp1720I	GCTNAGC	1 cut(s)	108
BspCNI	CTCAG	1 cut(s)	100
BspPI	GGATC	1 cut(s)	57
BsrDI	GCAATG	1 cut(s)	190
BssMI	GATC	1 cut(s)	49
BstDEI	CTNAG	1 cut(s)	108
BstKTI	GATC	1 cut(s)	52
BstMBI	GATC	1 cut(s)	49
BstV1I	GCAGC	1 cut(s)	182
CviAII	CATG	1 cut(s)	81
CviJI	RGCY	1 cut(s)	107
CviKI_1	RGCY	1 cut(s)	107
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
FaeI	CATG	1 cut(s)	84
FaiI	YATR	7 cut(s)	58, 82, 86, 149, 177, 179, 205
FatI	CATG	1 cut(s)	80
Fnu4HI	GCNGC	1 cut(s)	196
Fsp4HI	GCNGC	1 cut(s)	196
GluI	GCNGC	1 cut(s)	196
Hin1II	CATG	1 cut(s)	84
Hpy166II	GTNNAC	1 cut(s)	93
Hpy188III	TCNNGA	2 cut(s)	131, 143
Hpy8I	GTNNAC	1 cut(s)	93
HpyAV	CCTTC	1 cut(s)	44
HpyCH4V	TGCA	1 cut(s)	167
HpyF3I	CTNAG	1 cut(s)	108
Hsp92II	CATG	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	49
LpnPI	CCDG	1 cut(s)	25
Lsp1109I	GCAGC	1 cut(s)	182
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	1 cut(s)	192
MluCI	AATT	1 cut(s)	18
MseI	TTAA	1 cut(s)	17
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	1 cut(s)	196
Sau3AI	GATC	1 cut(s)	49
SetI	ASST	1 cut(s)	63
SgeI	CNNG	6 cut(s)	24, 50, 59, 93, 143, 155
Sse9I	AATT	1 cut(s)	18
TasI	AATT	1 cut(s)	18
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	1 cut(s)	195
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	4 cut(s)	12, 16, 101, 192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.