Rh7CG262100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0009737
Physical Location & Seq
Forward (+)
25597407 .. 25609768
12362 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG262100.1

Sequence Viewer

Length: 360 bp
ATGGAATTAGCTACTAGGGCAACACTAGAGTCTATACGTAGTGGCTCCTTCATCAGGTTATTTTGGGTTCGCAGCATAGCGTACGTGGACAATGCCAAAGCTCAACATGGCGCCAATACATTGATATACCTGGACGATATATCTATACACAGCGCCTCAAATGAATCAAGGTCAATGATAAGTTTTAAAGACATTATTGTGAGAAACTATAAGGAACTCATAGTTAGCAAAGCCAAGAAAGTAGTAGTTAGTATGATACATATATCTCTGATAGAATCTTCCAAGGAGAAGTTGTCTAAGGAACCGAAACATCTCAATAATCCTAACCTCTATCATAAGATGTTTACCCATCATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.67

Weight (kDa)

9.77

Isoelectric Point (pI)

40.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 110
AcyI GRCGYC 1 cut(s) 111
AfaI GTAC 1 cut(s) 83
AfiI CCNNNNNNNGG 1 cut(s) 54
AjnI CCWGG 1 cut(s) 129
AluBI AGCT 2 cut(s) 11, 101
AluI AGCT 2 cut(s) 11, 101
ApeKI GCWGC 1 cut(s) 72
AspLEI GCGC 2 cut(s) 113, 155
BanI GGYRCC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 84
BccI CCATC 1 cut(s) 357
BciT130I CCWGG 1 cut(s) 131
BfaI CTAG 2 cut(s) 15, 26
BfoI RGCGCY 2 cut(s) 114, 156
BisI GCNGC 1 cut(s) 73
BlsI GCNGC 1 cut(s) 74
Bme1390I CCNGG 1 cut(s) 131
BmiI GGNNCC 3 cut(s) 46, 112, 303
BmrFI CCNGG 1 cut(s) 131
BsaAI YACGTR 2 cut(s) 38, 85
BsaHI GRCGYC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 282
BsaXI ACNNNNNCTCC 2 cut(s) 278, 308
Bsc4I CCNNNNNNNGG 1 cut(s) 54
BseBI CCWGG 1 cut(s) 131
BseDI CCNNGG 1 cut(s) 282
BseLI CCNNNNNNNGG 1 cut(s) 54
BseXI GCAGC 1 cut(s) 84
BshNI GGYRCC 1 cut(s) 110
BsiWI CGTACG 1 cut(s) 81
BslI CCNNNNNNNGG 1 cut(s) 54
BspLI GGNNCC 3 cut(s) 46, 112, 303
BspT107I GGYRCC 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 282
BssNI GRCGYC 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 131
BstACI GRCGYC 1 cut(s) 111
BstBAI YACGTR 2 cut(s) 38, 85
BstDEI CTNAG 1 cut(s) 297
BstENI CCTNNNNNAGG 1 cut(s) 52
BstH2I RGCGCY 2 cut(s) 114, 156
BstHHI GCGC 2 cut(s) 113, 155
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNI CCWGG 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 129
BstSNI TACGTA 1 cut(s) 38
BstV1I GCAGC 1 cut(s) 84
CfoI GCGC 2 cut(s) 113, 155
Csp6I GTAC 1 cut(s) 82
CviAII CATG 1 cut(s) 107
CviJI RGCY 4 cut(s) 11, 45, 101, 233
CviKI_1 RGCY 4 cut(s) 11, 45, 101, 233
CviQI GTAC 1 cut(s) 82
DdeI CTNAG 1 cut(s) 297
DinI GGCGCC 1 cut(s) 112
DraI TTTAAA 1 cut(s) 187
Eco105I TACGTA 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 282
EcoNI CCTNNNNNAGG 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 129
EcoT14I CCWWGG 1 cut(s) 282
EgeI GGCGCC 1 cut(s) 112
EheI GGCGCC 1 cut(s) 112
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 1 cut(s) 110
FatI CATG 1 cut(s) 106
Fnu4HI GCNGC 1 cut(s) 73
Fsp4HI GCNGC 1 cut(s) 73
FspBI CTAG 2 cut(s) 15, 26
GlaI GCGC 2 cut(s) 112, 154
GluI GCNGC 1 cut(s) 73
HaeII RGCGCY 2 cut(s) 114, 156
HhaI GCGC 2 cut(s) 113, 155
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 1 cut(s) 110
Hin6I GCGC 2 cut(s) 111, 153
HinP1I GCGC 2 cut(s) 111, 153
HinfI GANTC 3 cut(s) 29, 164, 275
Hpy166II GTNNAC 2 cut(s) 88, 345
Hpy188I TCNGA 1 cut(s) 270
Hpy8I GTNNAC 2 cut(s) 88, 345
HpyAV CCTTC 1 cut(s) 58
HpyCH4IV ACGT 2 cut(s) 37, 84
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 1 cut(s) 297
HpySE526I ACGT 2 cut(s) 37, 84
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 1 cut(s) 110
HspAI GCGC 2 cut(s) 111, 153
KasI GGCGCC 1 cut(s) 110
LmnI GCTCC 1 cut(s) 50
LpnPI CCDG 3 cut(s) 40, 116, 143
Lsp1109I GCAGC 1 cut(s) 84
MaeI CTAG 2 cut(s) 15, 26
MaeII ACGT 2 cut(s) 37, 84
MboII GAAGA 1 cut(s) 270
MluCI AATT 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 111
MlyI GAGTC 1 cut(s) 38
MnlI CCTC 2 cut(s) 166, 338
MseI TTAA 1 cut(s) 186
MslI CAYNNNNRTG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 131
MwoI GCNNNNNNNGC 1 cut(s) 17
NarI GGCGCC 1 cut(s) 111
NlaIII CATG 1 cut(s) 110
NlaIV GGNNCC 3 cut(s) 46, 112, 303
PfeI GAWTC 2 cut(s) 164, 275
Pfl23II CGTACG 1 cut(s) 81
PkrI GCNGC 1 cut(s) 74
PleI GAGTC 1 cut(s) 37
PluTI GGCGCC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 37
Ppu21I YACGTR 2 cut(s) 38, 85
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
PspLI CGTACG 1 cut(s) 81
PspN4I GGNNCC 3 cut(s) 46, 112, 303
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
RseI CAYNNNNRTG 1 cut(s) 197
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 1 cut(s) 73
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 1 cut(s) 131
SetI ASST 8 cut(s) 13, 40, 59, 87, 103, 132, 173, 330
SfoI GGCGCC 1 cut(s) 112
SmiMI CAYNNNNRTG 1 cut(s) 197
SnaBI TACGTA 1 cut(s) 38
Sse9I AATT 1 cut(s) 5
SspDI GGCGCC 1 cut(s) 110
SspMI CTAG 2 cut(s) 15, 26
StyD4I CCNGG 1 cut(s) 129
StyI CCWWGG 1 cut(s) 282
TaiI ACGT 2 cut(s) 40, 87
TasI AATT 1 cut(s) 5
TfiI GAWTC 2 cut(s) 164, 275
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TseI GCWGC 1 cut(s) 72
TspDTI ATGAA 2 cut(s) 40, 177
XagI CCTNNNNNAGG 1 cut(s) 52
XspI CTAG 2 cut(s) 15, 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.