Rh7DG252700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0009737
Physical Location & Seq
Forward (+)
26266446 .. 26270057
3612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG252700.1

Sequence Viewer

Length: 351 bp
ATGGTGCCTTGCGCCTCCCGTATCATTTTCTCTAACGGCGCCCAGACTAAGGTCGGTGATGACGACTCGCGGATGAAAGACTCAAGCTTTTCCGTCTCCAACATCTCTTTCTCAATGACGGCGCATAGCGGAGTAAGGGAAGAGGCGTTCGTCATCATCGGTGACAAGTCATGTGACCAGGCTGGCGTGAACATATATTCAAGAGCATCAGCTGAAGGAAAACGCGTTCTGGGCGCCAATACATTGATATACCTGGATGATATATCTATACACAGCACCTCAAAGGAGCCAAGGTCAATGATAAGGTTCAGTACTTCATATGATATTGCTGGTAGAAGTGAGAAGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.53

Weight (kDa)

6.72

Isoelectric Point (pI)

43.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 4, 38, 233
AccII CGCG 2 cut(s) 70, 225
AciI CCGC 2 cut(s) 70, 129
AcuI CTGAAG 1 cut(s) 234
AcyI GRCGYC 2 cut(s) 39, 234
AfaI GTAC 1 cut(s) 313
AfiI CCNNNNNNNGG 1 cut(s) 49
AflIII ACRYGT 1 cut(s) 223
AgsI TTSAA 1 cut(s) 201
AjnI CCWGG 2 cut(s) 177, 252
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
AloI GAACNNNNNNTCC 4 cut(s) 131, 163, 210, 242
AluBI AGCT 2 cut(s) 87, 212
AluI AGCT 2 cut(s) 87, 212
Alw26I GTCTC 1 cut(s) 100
AspLEI GCGC 4 cut(s) 14, 41, 124, 236
AsuHPI GGTGA 2 cut(s) 68, 173
BanI GGYRCC 3 cut(s) 4, 38, 233
BceAI ACGGC 2 cut(s) 52, 135
BciT130I CCWGG 2 cut(s) 179, 254
BcoDI GTCTC 1 cut(s) 100
BfoI RGCGCY 2 cut(s) 42, 237
BmcAI AGTACT 1 cut(s) 313
Bme1390I CCNGG 2 cut(s) 179, 254
BmiI GGNNCC 4 cut(s) 6, 40, 235, 288
BmrFI CCNGG 2 cut(s) 179, 254
BmsI GCATC 1 cut(s) 215
BoxI GACNNNNGTC 1 cut(s) 50
BpuEI CTTGAG 1 cut(s) 67
BsaHI GRCGYC 2 cut(s) 39, 234
BsaJI CCNNGG 1 cut(s) 290
BsaXI ACNNNNNCTCC 2 cut(s) 278, 308
Bsc4I CCNNNNNNNGG 1 cut(s) 49
BseBI CCWGG 2 cut(s) 179, 254
BseDI CCNNGG 1 cut(s) 290
BseGI GGATG 2 cut(s) 78, 262
BseLI CCNNNNNNNGG 1 cut(s) 49
Bsh1236I CGCG 2 cut(s) 70, 225
BshNI GGYRCC 3 cut(s) 4, 38, 233
BslI CCNNNNNNNGG 1 cut(s) 49
BsmAI GTCTC 1 cut(s) 100
BsmBI CGTCTC 1 cut(s) 100
BspACI CCGC 2 cut(s) 70, 129
BspFNI CGCG 2 cut(s) 70, 225
BspLI GGNNCC 4 cut(s) 6, 40, 235, 288
BspT107I GGYRCC 3 cut(s) 4, 38, 233
BssECI CCNNGG 1 cut(s) 290
BssNI GRCGYC 2 cut(s) 39, 234
BssT1I CCWWGG 1 cut(s) 290
Bst2UI CCWGG 2 cut(s) 179, 254
Bst6I CTCTTC 1 cut(s) 135
BstACI GRCGYC 2 cut(s) 39, 234
BstC8I GCNNGC 1 cut(s) 184
BstDEI CTNAG 1 cut(s) 48
BstF5I GGATG 2 cut(s) 78, 262
BstFNI CGCG 2 cut(s) 70, 225
BstH2I RGCGCY 2 cut(s) 42, 237
BstHHI GCGC 4 cut(s) 14, 41, 124, 236
BstMAI GTCTC 1 cut(s) 100
BstMWI GCNNNNNNNGC 1 cut(s) 231
BstNI CCWGG 2 cut(s) 179, 254
BstPAI GACNNNNGTC 1 cut(s) 50
BstSCI CCNGG 2 cut(s) 177, 252
BstUI CGCG 2 cut(s) 70, 225
BtsCI GGATG 2 cut(s) 78, 262
Cac8I GCNNGC 1 cut(s) 184
CfoI GCGC 4 cut(s) 14, 41, 124, 236
Csp6I GTAC 1 cut(s) 312
CviAII CATG 1 cut(s) 171
CviJI RGCY 4 cut(s) 87, 182, 212, 289
CviKI_1 RGCY 4 cut(s) 87, 182, 212, 289
CviQI GTAC 1 cut(s) 312
DdeI CTNAG 1 cut(s) 48
DinI GGCGCC 2 cut(s) 40, 235
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Eco130I CCWWGG 1 cut(s) 290
Eco57I CTGAAG 1 cut(s) 234
EcoRII CCWGG 2 cut(s) 177, 252
EcoT14I CCWWGG 1 cut(s) 290
EgeI GGCGCC 2 cut(s) 40, 235
EheI GGCGCC 2 cut(s) 40, 235
ErhI CCWWGG 1 cut(s) 290
Esp3I CGTCTC 1 cut(s) 100
FaeI CATG 1 cut(s) 174
FaiI YATR 9 cut(s) 126, 172, 194, 196, 250, 263, 269, 319, 321
FatI CATG 1 cut(s) 170
FauNDI CATATG 1 cut(s) 319
FokI GGATG 2 cut(s) 85, 269
GlaI GCGC 4 cut(s) 13, 40, 123, 235
HaeII RGCGCY 2 cut(s) 42, 237
HhaI GCGC 4 cut(s) 14, 41, 124, 236
Hin1I GRCGYC 2 cut(s) 39, 234
Hin1II CATG 1 cut(s) 174
Hin6I GCGC 4 cut(s) 12, 39, 122, 234
HinP1I GCGC 4 cut(s) 12, 39, 122, 234
HindIII AAGCTT 1 cut(s) 85
HinfI GANTC 2 cut(s) 65, 80
HphI GGTGA 2 cut(s) 68, 173
Hpy166II GTNNAC 1 cut(s) 190
Hpy188III TCNNGA 1 cut(s) 201
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 2 cut(s) 209, 337
HpyF10VI GCNNNNNNNGC 1 cut(s) 231
HpyF3I CTNAG 1 cut(s) 48
Hsp92I GRCGYC 2 cut(s) 39, 234
Hsp92II CATG 1 cut(s) 174
HspAI GCGC 4 cut(s) 12, 39, 122, 234
KasI GGCGCC 2 cut(s) 38, 233
LmnI GCTCC 1 cut(s) 286
LpnPI CCDG 8 cut(s) 56, 164, 168, 191, 215, 239, 266, 315
LweI GCATC 1 cut(s) 215
MaeIII GTNAC 2 cut(s) 161, 173
MboII GAAGA 1 cut(s) 152
MluI ACGCGT 1 cut(s) 223
Mly113I GGCGCC 2 cut(s) 39, 234
MlyI GAGTC 2 cut(s) 59, 74
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 3 cut(s) 25, 136, 289
MspA1I CMGCKG 1 cut(s) 212
MspR9I CCNGG 2 cut(s) 179, 254
MvaI CCWGG 2 cut(s) 179, 254
MvnI CGCG 2 cut(s) 70, 225
MwoI GCNNNNNNNGC 1 cut(s) 231
NarI GGCGCC 2 cut(s) 39, 234
NdeI CATATG 1 cut(s) 319
NlaIII CATG 1 cut(s) 174
NlaIV GGNNCC 4 cut(s) 6, 40, 235, 288
NmuCI GTSAC 2 cut(s) 161, 173
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PleI GAGTC 2 cut(s) 59, 74
PluTI GGCGCC 2 cut(s) 42, 237
PpsI GAGTC 2 cut(s) 59, 74
PshAI GACNNNNGTC 1 cut(s) 50
Psp6I CCWGG 2 cut(s) 177, 252
PspGI CCWGG 2 cut(s) 177, 252
PspN4I GGNNCC 4 cut(s) 6, 40, 235, 288
PvuII CAGCTG 1 cut(s) 212
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
ScaI AGTACT 1 cut(s) 313
SchI GAGTC 2 cut(s) 59, 74
ScrFI CCNGG 2 cut(s) 179, 254
SetI ASST 7 cut(s) 54, 89, 214, 255, 281, 296, 308
SfaNI GCATC 1 cut(s) 215
SfoI GGCGCC 2 cut(s) 40, 235
SmlI CTYRAG 1 cut(s) 82
SmoI CTYRAG 1 cut(s) 82
SsiI CCGC 2 cut(s) 70, 129
SspDI GGCGCC 2 cut(s) 38, 233
StyD4I CCNGG 2 cut(s) 177, 252
StyI CCWWGG 1 cut(s) 290
TatI WGTACW 1 cut(s) 311
TseFI GTSAC 2 cut(s) 161, 173
Tsp45I GTSAC 2 cut(s) 161, 173
TspDTI ATGAA 2 cut(s) 89, 306
TspGWI ACGGA 1 cut(s) 82
ZrmI AGTACT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.