Rroxscaffold_7G00166790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0009737
Physical Location & Seq
Reverse (-)
8157634 .. 8159915
2282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00166790.1

Sequence Viewer

Length: 180 bp
ATGGTTGATTGGAGCATCCGGACCCATGATTTTGAAATCCATTCTTCTCTTCCCGCTTTGATCTTCCGCCTTTGTGGCGAGGTGATGGGATCACCAAAGCCCTCCGCCTTTGTGGCGCCGGTTACCGTCTCTCGTGATGCATTCGAAGCCCGCACCTTATCGCTACACCGAGTGGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

59

Amino Acids

6.55

Weight (kDa)

6.81

Isoelectric Point (pI)

37.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 115
AccIII TCCGGA 1 cut(s) 18
AciI CCGC 4 cut(s) 54, 67, 105, 151
AclWI GGATC 1 cut(s) 97
AcyI GRCGYC 1 cut(s) 116
AdeI CACNNNGTG 1 cut(s) 172
AgsI TTSAA 1 cut(s) 35
Alw26I GTCTC 1 cut(s) 133
AlwI GGATC 1 cut(s) 97
Aor13HI TCCGGA 1 cut(s) 18
AspLEI GCGC 1 cut(s) 118
AspS9I GGNCC 1 cut(s) 21
AsuHPI GGTGA 2 cut(s) 84, 94
AsuII TTCGAA 1 cut(s) 144
AvaII GGWCC 1 cut(s) 21
BanI GGYRCC 1 cut(s) 115
BauI CACGAG 1 cut(s) 132
BccI CCATC 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 133
BfoI RGCGCY 1 cut(s) 119
BglI GCCNNNNNGGC 2 cut(s) 75, 113
Bme18I GGWCC 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 21
BmiI GGNNCC 2 cut(s) 23, 117
BmsI GCATC 2 cut(s) 24, 127
Bpu14I TTCGAA 1 cut(s) 144
BsaHI GRCGYC 1 cut(s) 116
BsaWI WCCGGW 1 cut(s) 18
Bse118I RCCGGY 1 cut(s) 118
BseAI TCCGGA 1 cut(s) 18
BseGI GGATG 1 cut(s) 15
BshNI GGYRCC 1 cut(s) 115
BsiSI CCGG 2 cut(s) 19, 119
BsmAI GTCTC 1 cut(s) 133
BsmBI CGTCTC 1 cut(s) 133
BsmI GAATGC 1 cut(s) 140
Bsp119I TTCGAA 1 cut(s) 144
Bsp13I TCCGGA 1 cut(s) 18
Bsp143I GATC 2 cut(s) 60, 89
BspACI CCGC 4 cut(s) 54, 67, 105, 151
BspEI TCCGGA 1 cut(s) 18
BspLI GGNNCC 2 cut(s) 23, 117
BspPI GGATC 1 cut(s) 97
BspT104I TTCGAA 1 cut(s) 144
BspT107I GGYRCC 1 cut(s) 115
BsrFI RCCGGY 1 cut(s) 118
BssAI RCCGGY 1 cut(s) 118
BssMI GATC 2 cut(s) 60, 89
BssNI GRCGYC 1 cut(s) 116
BssSI CACGAG 1 cut(s) 132
Bst2BI CACGAG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 54
BstACI GRCGYC 1 cut(s) 116
BstBI TTCGAA 1 cut(s) 144
BstC8I GCNNGC 1 cut(s) 151
BstEII GGTNACC 1 cut(s) 121
BstF5I GGATG 1 cut(s) 15
BstH2I RGCGCY 1 cut(s) 119
BstHHI GCGC 1 cut(s) 118
BstKTI GATC 2 cut(s) 63, 92
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 2 cut(s) 60, 89
BstMWI GCNNNNNNNGC 3 cut(s) 75, 113, 146
BstPI GGTNACC 1 cut(s) 121
BtsCI GGATG 1 cut(s) 15
Cac8I GCNNGC 1 cut(s) 151
CfoI GCGC 1 cut(s) 118
Cfr10I RCCGGY 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 21
CviAII CATG 1 cut(s) 26
CviJI RGCY 2 cut(s) 100, 149
CviKI_1 RGCY 2 cut(s) 100, 149
DinI GGCGCC 1 cut(s) 117
DpnI GATC 2 cut(s) 62, 91
DpnII GATC 2 cut(s) 60, 89
DraIII CACNNNGTG 1 cut(s) 172
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
EciI GGCGGA 2 cut(s) 56, 94
Eco47I GGWCC 1 cut(s) 21
Eco91I GGTNACC 1 cut(s) 121
EcoO65I GGTNACC 1 cut(s) 121
EcoT22I ATGCAT 1 cut(s) 142
EgeI GGCGCC 1 cut(s) 117
EheI GGCGCC 1 cut(s) 117
Esp3I CGTCTC 1 cut(s) 133
FaeI CATG 1 cut(s) 29
FaiI YATR 1 cut(s) 27
FatI CATG 1 cut(s) 25
FauI CCCGC 2 cut(s) 61, 158
FokI GGATG 1 cut(s) 2
GlaI GCGC 1 cut(s) 117
HaeII RGCGCY 1 cut(s) 119
HapII CCGG 2 cut(s) 19, 119
HhaI GCGC 1 cut(s) 118
Hin1I GRCGYC 1 cut(s) 116
Hin1II CATG 1 cut(s) 29
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HpaII CCGG 2 cut(s) 19, 119
HphI GGTGA 2 cut(s) 84, 94
Hpy188III TCNNGA 2 cut(s) 19, 134
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 1 cut(s) 140
HpyF10VI GCNNNNNNNGC 3 cut(s) 75, 113, 146
Hsp92I GRCGYC 1 cut(s) 116
Hsp92II CATG 1 cut(s) 29
HspAI GCGC 1 cut(s) 116
KasI GGCGCC 1 cut(s) 115
Kpn2I TCCGGA 1 cut(s) 18
Kzo9I GATC 2 cut(s) 60, 89
LmnI GCTCC 1 cut(s) 12
LpnPI CCDG 2 cut(s) 32, 132
LweI GCATC 2 cut(s) 24, 127
MaeIII GTNAC 1 cut(s) 121
MalI GATC 2 cut(s) 62, 91
MboI GATC 2 cut(s) 60, 89
MboII GAAGA 3 cut(s) 36, 41, 55
Mly113I GGCGCC 1 cut(s) 116
MnlI CCTC 2 cut(s) 73, 112
Mph1103I ATGCAT 1 cut(s) 142
MroI TCCGGA 1 cut(s) 18
MspI CCGG 2 cut(s) 19, 119
Mva1269I GAATGC 1 cut(s) 140
MwoI GCNNNNNNNGC 3 cut(s) 75, 113, 146
NarI GGCGCC 1 cut(s) 116
NdeII GATC 2 cut(s) 60, 89
NlaIII CATG 1 cut(s) 29
NlaIV GGNNCC 2 cut(s) 23, 117
NsiI ATGCAT 1 cut(s) 142
NspV TTCGAA 1 cut(s) 144
PctI GAATGC 1 cut(s) 140
PluTI GGCGCC 1 cut(s) 119
PspEI GGTNACC 1 cut(s) 121
PspN4I GGNNCC 2 cut(s) 23, 117
PspPI GGNCC 1 cut(s) 21
Sau3AI GATC 2 cut(s) 60, 89
Sau96I GGNCC 1 cut(s) 21
SetI ASST 2 cut(s) 84, 158
SfaNI GCATC 2 cut(s) 24, 127
SfoI GGCGCC 1 cut(s) 117
SfuI TTCGAA 1 cut(s) 144
SgeI CNNG 8 cut(s) 31, 38, 65, 91, 131, 144, 146, 162
SinI GGWCC 1 cut(s) 21
SsiI CCGC 4 cut(s) 54, 67, 105, 151
SspDI GGCGCC 1 cut(s) 115
TaaI ACNGT 1 cut(s) 127
TaqI TCGA 1 cut(s) 144
VpaK11BI GGWCC 1 cut(s) 21
Zsp2I ATGCAT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.