Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0009737

Physical Location & Seq

Genomic Coordinates Reverse (-)

39109562 .. 39122938

Gene Structure 13377 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG218000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGGTCTGACAGTGACTCCGATGAGCCCAACGAGTACTACACTGGTGGCGAGAAAAGTGGTATGCTTGTCCAAGACCCCACCAGAGGCGGGGGTGACGTGGATTCAATTTTCACTCAAGCCAGATAGAGAGACCGTTCCAACTGCTGCACCTCAGCCACCTGAGTCCATCAATCACACCATTACTTTCTGGAGGAATGGCTTTTCCATAAATGACGGTCCGCTGCGGAGGCTGGATGATCCTGCAAATGCAGCCTTCTTGGAATTCAACAGCACCATCAAAGATAAGCGGGCTACAGATAATTCTGATCTTCCTTTTGAATATTGTTTTACAGTCAGGCAAATCAAATTCCAACAACAGCAATACAAACAAAACATGCTTCAACCAATGCTTGGAATAATTGCAATGTCTCAATATGATGGGCTTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0006914 GO:0006996 GO:0006997 GO:0006998 GO:0007030 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010256 GO:0010498 GO:0010921 GO:0016043 GO:0016236 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0019899 GO:0019941 GO:0022607 GO:0030163 GO:0030234 GO:0031323 GO:0031399 GO:0031468 GO:0032182 GO:0032268 GO:0035303 GO:0035304 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043666 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0051117 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0051603 GO:0060255 GO:0061024 GO:0061025 GO:0061919 GO:0065007 GO:0065009 GO:0070925 GO:0071704 GO:0071840 GO:0080090 GO:0098772 GO:1901564 GO:1901565 GO:1901575 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

SEP UBA_4 UBX

Protein Analysis

143

Amino Acids

16.04

Weight (kDa)

7.76

Isoelectric Point (pI)

47.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SEP	PF08059	61 - 88	1.9e-11	SEP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0009737)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0159391 RchiOBHm_Chr3g0487301
rosa_laevigata	RLG00000011507 RLG00000029402
rosa_roxburghii	Rroxscaffold_4G00312630 Rroxscaffold_7G00166790 Rroxscaffold_7G00169590 Rroxscaffold_7G00206080
rosa_rugosa	Rorug06G0002000
rosa_samantha	Rh1AG200100 Rh1AG205000 Rh1AG242200 Rh1CG185000 Rh2BG555400 Rh3AG249400 Rh4AG107400 Rh4CG107100 Rh6AG218000 Rh6DG091600 Rh7CG262100 Rh7DG252700
rosa_wichuraiana	Rw1G021230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	392
AciI	CCGC	4 cut(s)	89, 221, 226, 289
AclWI	GGATC	1 cut(s)	233
AcsI	RAATTY	2 cut(s)	263, 347
AfaI	GTAC	1 cut(s)	37
AfiI	CCNNNNNNNGG	3 cut(s)	85, 89, 392
AgsI	TTSAA	4 cut(s)	107, 268, 320, 383
AjiI	CACGTC	1 cut(s)	99
Alw26I	GTCTC	2 cut(s)	125, 414
AlwI	GGATC	1 cut(s)	233
ApeKI	GCWGC	3 cut(s)	146, 223, 251
ApoI	RAATTY	2 cut(s)	263, 347
AspS9I	GGNCC	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	29
BbvCI	CCTCAGC	1 cut(s)	153
BbvI	GCAGC	3 cut(s)	133, 210, 263
BccI	CCATC	3 cut(s)	176, 284, 413
BcoDI	GTCTC	2 cut(s)	125, 414
BfmI	CTRYAG	1 cut(s)	294
BisI	GCNGC	3 cut(s)	147, 224, 252
BlsI	GCNGC	3 cut(s)	148, 225, 253
BmcAI	AGTACT	1 cut(s)	37
Bme18I	GGWCC	1 cut(s)	218
BmgBI	CACGTC	1 cut(s)	99
BmgT120I	GGNCC	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	211
Bpu10I	CCTNAGC	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	101
BsaI	GGTCTC	1 cut(s)	125
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 89, 392
Bse1I	ACTGG	1 cut(s)	48
Bse3DI	GCAATG	1 cut(s)	411
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	3 cut(s)	85, 89, 392
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	2 cut(s)	153, 167
BseNI	ACTGG	1 cut(s)	48
BseXI	GCAGC	3 cut(s)	133, 210, 263
BsgI	GTGCAG	1 cut(s)	132
BslI	CCNNNNNNNGG	3 cut(s)	85, 89, 392
BsmAI	GTCTC	2 cut(s)	125, 414
Bso31I	GGTCTC	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	2 cut(s)	238, 307
BspACI	CCGC	4 cut(s)	89, 221, 226, 289
BspCNI	CTCAG	2 cut(s)	154, 166
BspPI	GGATC	1 cut(s)	233
BspTNI	GGTCTC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	411
BsrI	ACTGG	1 cut(s)	48
BssMI	GATC	2 cut(s)	238, 307
Bst4CI	ACNGT	4 cut(s)	13, 136, 218, 334
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	2 cut(s)	153, 162
BstF5I	GGATG	1 cut(s)	241
BstKTI	GATC	2 cut(s)	241, 310
BstMAI	GTCTC	2 cut(s)	125, 414
BstMBI	GATC	2 cut(s)	238, 307
BstMWI	GCNNNNNNNGC	2 cut(s)	229, 251
BstNSI	RCATGY	1 cut(s)	379
BstSFI	CTRYAG	1 cut(s)	294
BstV1I	GCAGC	3 cut(s)	133, 210, 263
BtrI	CACGTC	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	241
BtsIMutI	CAGTG	2 cut(s)	18, 41
Cac8I	GCNNGC	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	218
CpoI	CGGWCCG	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	36
CspI	CGGWCCG	1 cut(s)	218
CviAII	CATG	1 cut(s)	376
CviJI	RGCY	8 cut(s)	27, 121, 157, 201, 232, 254, 293, 424
CviKI_1	RGCY	8 cut(s)	27, 121, 157, 201, 232, 254, 293, 424
CviQI	GTAC	1 cut(s)	36
DdeI	CTNAG	2 cut(s)	153, 162
DpnI	GATC	2 cut(s)	240, 309
DpnII	GATC	2 cut(s)	238, 307
Eco24I	GRGCYC	1 cut(s)	29
Eco31I	GGTCTC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	218
EcoRI	GAATTC	1 cut(s)	263
EcoT38I	GRGCYC	1 cut(s)	29
FaeI	CATG	1 cut(s)	379
FaiI	YATR	4 cut(s)	64, 209, 377, 417
FatI	CATG	1 cut(s)	375
FauI	CCCGC	2 cut(s)	82, 282
Fnu4HI	GCNGC	3 cut(s)	147, 224, 252
FokI	GGATG	1 cut(s)	248
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	3 cut(s)	147, 224, 252
GluI	GCNGC	3 cut(s)	147, 224, 252
GsuI	CTGGAG	1 cut(s)	211
Hin1II	CATG	1 cut(s)	379
HinfI	GANTC	3 cut(s)	16, 103, 164
HphI	GGTGA	1 cut(s)	106
Hpy188I	TCNGA	3 cut(s)	9, 21, 307
Hpy188III	TCNNGA	1 cut(s)	190
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	4 cut(s)	13, 136, 218, 334
HpyCH4IV	ACGT	1 cut(s)	98
HpyCH4V	TGCA	4 cut(s)	149, 245, 251, 404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	229, 251
HpyF3I	CTNAG	2 cut(s)	153, 162
HpySE526I	ACGT	1 cut(s)	98
Hsp92II	CATG	1 cut(s)	379
Kzo9I	GATC	2 cut(s)	238, 307
LpnPI	CCDG	8 cut(s)	29, 96, 135, 174, 175, 218, 255, 322
Lsp1109I	GCAGC	3 cut(s)	133, 210, 263
MaeII	ACGT	1 cut(s)	98
MaeIII	GTNAC	2 cut(s)	13, 94
MalI	GATC	2 cut(s)	240, 309
MboI	GATC	2 cut(s)	238, 307
MboII	GAAGA	1 cut(s)	302
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	5 cut(s)	107, 263, 301, 347, 399
MlyI	GAGTC	2 cut(s)	10, 173
MmeI	TCCRAC	2 cut(s)	164, 376
MnlI	CCTC	4 cut(s)	79, 162, 186, 222
MspA1I	CMGCKG	1 cut(s)	223
MwoI	GCNNNNNNNGC	2 cut(s)	229, 251
NdeII	GATC	2 cut(s)	238, 307
NlaIII	CATG	1 cut(s)	379
NmuCI	GTSAC	2 cut(s)	13, 94
NspI	RCATGY	1 cut(s)	379
PfeI	GAWTC	1 cut(s)	103
PflMI	CCANNNNNTGG	1 cut(s)	392
PkrI	GCNGC	3 cut(s)	148, 225, 253
PleI	GAGTC	2 cut(s)	10, 172
PpsI	GAGTC	2 cut(s)	10, 172
PspPI	GGNCC	1 cut(s)	218
RsaI	GTAC	1 cut(s)	37
RsaNI	GTAC	1 cut(s)	36
Rsr2I	CGGWCCG	1 cut(s)	218
RsrII	CGGWCCG	1 cut(s)	218
SatI	GCNGC	3 cut(s)	147, 224, 252
Sau3AI	GATC	2 cut(s)	238, 307
Sau96I	GGNCC	1 cut(s)	218
ScaI	AGTACT	1 cut(s)	37
SchI	GAGTC	2 cut(s)	10, 173
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	3 cut(s)	101, 154, 163
SfcI	CTRYAG	1 cut(s)	294
SinI	GGWCC	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	5 cut(s)	107, 263, 301, 347, 399
SsiI	CCGC	4 cut(s)	89, 221, 226, 289
SspI	AATATT	1 cut(s)	323
TaaI	ACNGT	4 cut(s)	13, 136, 218, 334
TaiI	ACGT	1 cut(s)	101
TasI	AATT	5 cut(s)	107, 263, 301, 347, 399
TatI	WGTACW	1 cut(s)	35
TfiI	GAWTC	1 cut(s)	103
TscAI	CASTG	2 cut(s)	18, 48
TseFI	GTSAC	2 cut(s)	13, 94
TseI	GCWGC	3 cut(s)	146, 223, 251
Tsp45I	GTSAC	2 cut(s)	13, 94
TspRI	CASTG	2 cut(s)	18, 48
Van91I	CCANNNNNTGG	1 cut(s)	392
VpaK11BI	GGWCC	1 cut(s)	218
XapI	RAATTY	2 cut(s)	263, 347
XceI	RCATGY	1 cut(s)	379
ZrmI	AGTACT	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.