Rroxscaffold_7G00169590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0009737
Physical Location & Seq
Reverse (-)
10176662 .. 10185125
8464 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00169590.1

Sequence Viewer

Length: 780 bp
ATGGGAAATTCTTTTGCGAGAGTTGGGGAAGCCTTATGTATTTATGGATTTACTTGGTTTTCGGATTCCTTTTGCCGTACTTTGGGTGACTATTATCATGCTAGCATTGATCTTTCGCCTTTGTGGCGAGGTGATAGGACCACCGAAGCCCTCCGCCTTTGTGGCGCCGGTTCTGTCTCTGTGACGCGGCATGAGGAATATTATTGGAATTCGATGGAGATTCTTTGTGAATCTCATTCATTGATCTTCCGCCTTTGTGGCGAGGTGATGGGATCACCGAAGCCCTCCGCTTTTGTGGCGCCGGTTCTTGTCTCTGTGACGACACGGGTCGGGCTTGTGATCGGTGGCAGCGCCCTTGGCAGCTCTATAAGCCTCAAGCGGCATAATTCCGTACACAACATACACATTAACCCCACCTTCCTCCAAACAGCAATGGCCTCACACACCGTGTCTTGCGCCTCCTGTATCAACTTATCGAACCGTACCGGACCGAGGTCGGCGATGATGACTCGTGGAGGAAAGTCTCGGGGTTTTCATCTCCGGCGTCTCTTTCTCGATGATGGCTCATCGCGAGTGATGGAGGGAGGGGAACGGAGGCGCGTGAAGTGCGTGGCGGAGTTGAAGGAGTGGGTTTTGGAGTGGAAAGATGCGAGCTTTGGAGATGGGGAGAGGAGGGTGAAGGAGGAAGAAGATGAGAGTGTAGCTGGTTGCGGCATTGCGGTGGATTTCGAAGTGGGGATTTCAAAGTTTGTGGCTTTGTGTCATATTAGCAATGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

259

Amino Acids

28.51

Weight (kDa)

7.1

Isoelectric Point (pI)

47.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 164, 298
AccII CGCG 3 cut(s) 187, 571, 600
AciI CCGC 8 cut(s) 154, 187, 250, 288, 379, 614, 711, 719
AclWI GGATC 1 cut(s) 280
AcsI RAATTY 2 cut(s) 7, 208
AcyI GRCGYC 3 cut(s) 165, 299, 544
AdeI CACNNNGTG 1 cut(s) 448
AfaI GTAC 3 cut(s) 79, 393, 484
AfiI CCNNNNNNNGG 2 cut(s) 82, 492
AgsI TTSAA 2 cut(s) 622, 744
AluBI AGCT 3 cut(s) 363, 654, 704
AluI AGCT 3 cut(s) 363, 654, 704
Alw26I GTCTC 4 cut(s) 181, 316, 528, 551
AlwI GGATC 1 cut(s) 280
Ama87I CYCGRG 1 cut(s) 525
AoxI GGCC 1 cut(s) 435
ApeKI GCWGC 2 cut(s) 348, 360
ApoI RAATTY 2 cut(s) 7, 208
AspLEI GCGC 5 cut(s) 167, 301, 353, 458, 600
AspS9I GGNCC 2 cut(s) 138, 488
AsuHPI GGTGA 5 cut(s) 98, 143, 267, 277, 688
AsuII TTCGAA 1 cut(s) 729
AsuNHI GCTAGC 1 cut(s) 101
AvaI CYCGRG 1 cut(s) 525
AvaII GGWCC 2 cut(s) 138, 488
BanI GGYRCC 2 cut(s) 164, 298
BauI CACGAG 1 cut(s) 510
BbvI GCAGC 2 cut(s) 360, 372
BccI CCATC 5 cut(s) 208, 262, 554, 571, 656
BceAI ACGGC 1 cut(s) 60
BcoDI GTCTC 4 cut(s) 181, 316, 528, 551
BfaI CTAG 1 cut(s) 102
BfoI RGCGCY 3 cut(s) 168, 302, 354
BglI GCCNNNNNGGC 3 cut(s) 124, 162, 258
BisI GCNGC 5 cut(s) 188, 349, 361, 380, 712
BlsI GCNGC 5 cut(s) 189, 350, 362, 381, 713
Bme18I GGWCC 2 cut(s) 138, 488
BmeT110I CYCGRG 1 cut(s) 525
BmgT120I GGNCC 2 cut(s) 138, 488
BmiI GGNNCC 2 cut(s) 166, 300
BmsI GCATC 1 cut(s) 637
BmtI GCTAGC 1 cut(s) 105
BoxI GACNNNNGTC 2 cut(s) 326, 493
Bpu14I TTCGAA 1 cut(s) 729
BpuEI CTTGAG 1 cut(s) 359
BsaHI GRCGYC 3 cut(s) 165, 299, 544
BsaJI CCNNGG 2 cut(s) 355, 491
BsaWI WCCGGW 1 cut(s) 485
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 492
Bse118I RCCGGY 2 cut(s) 167, 301
Bse3DI GCAATG 3 cut(s) 438, 714, 778
BseDI CCNNGG 2 cut(s) 355, 491
BseLI CCNNNNNNNGG 2 cut(s) 82, 492
BseMI GCAATG 3 cut(s) 438, 714, 778
BseRI GAGGAG 1 cut(s) 685
BseXI GCAGC 2 cut(s) 360, 372
Bsh1236I CGCG 3 cut(s) 187, 571, 600
BshFI GGCC 1 cut(s) 437
BshNI GGYRCC 2 cut(s) 164, 298
BsiHKCI CYCGRG 1 cut(s) 525
BsiSI CCGG 4 cut(s) 168, 302, 486, 541
BslI CCNNNNNNNGG 2 cut(s) 82, 492
BsmAI GTCTC 4 cut(s) 181, 316, 528, 551
BsmBI CGTCTC 1 cut(s) 551
BsnI GGCC 1 cut(s) 437
BsoBI CYCGRG 1 cut(s) 525
Bsp119I TTCGAA 1 cut(s) 729
Bsp143I GATC 4 cut(s) 109, 243, 272, 339
Bsp68I TCGCGA 1 cut(s) 571
BspACI CCGC 8 cut(s) 154, 187, 250, 288, 379, 614, 711, 719
BspANI GGCC 1 cut(s) 437
BspFNI CGCG 3 cut(s) 187, 571, 600
BspLI GGNNCC 2 cut(s) 166, 300
BspOI GCTAGC 1 cut(s) 105
BspPI GGATC 1 cut(s) 280
BspT104I TTCGAA 1 cut(s) 729
BspT107I GGYRCC 2 cut(s) 164, 298
BsrDI GCAATG 3 cut(s) 438, 714, 778
BsrFI RCCGGY 2 cut(s) 167, 301
BssAI RCCGGY 2 cut(s) 167, 301
BssECI CCNNGG 2 cut(s) 355, 491
BssMI GATC 4 cut(s) 109, 243, 272, 339
BssNI GRCGYC 3 cut(s) 165, 299, 544
BssSI CACGAG 1 cut(s) 510
BssT1I CCWWGG 1 cut(s) 355
Bst2BI CACGAG 1 cut(s) 510
Bst4CI ACNGT 2 cut(s) 448, 482
BstACI GRCGYC 3 cut(s) 165, 299, 544
BstBI TTCGAA 1 cut(s) 729
BstC8I GCNNGC 2 cut(s) 103, 652
BstFNI CGCG 3 cut(s) 187, 571, 600
BstH2I RGCGCY 3 cut(s) 168, 302, 354
BstHHI GCGC 5 cut(s) 167, 301, 353, 458, 600
BstKTI GATC 4 cut(s) 112, 246, 275, 342
BstMAI GTCTC 4 cut(s) 181, 316, 528, 551
BstMBI GATC 4 cut(s) 109, 243, 272, 339
BstMWI GCNNNNNNNGC 7 cut(s) 124, 162, 258, 296, 357, 369, 606
BstPAI GACNNNNGTC 2 cut(s) 326, 493
BstUI CGCG 3 cut(s) 187, 571, 600
BstV1I GCAGC 2 cut(s) 360, 372
BsuRI GGCC 1 cut(s) 437
BtgZI GCGATG 2 cut(s) 515, 552
BtuMI TCGCGA 1 cut(s) 571
Cac8I GCNNGC 2 cut(s) 103, 652
CfoI GCGC 5 cut(s) 167, 301, 353, 458, 600
Cfr10I RCCGGY 2 cut(s) 167, 301
Cfr13I GGNCC 2 cut(s) 138, 488
CpoI CGGWCCG 1 cut(s) 488
CseI GACGC 2 cut(s) 193, 533
Csp6I GTAC 3 cut(s) 78, 392, 483
CspCI CAANNNNNGTGG 2 cut(s) 732, 767
CspI CGGWCCG 1 cut(s) 488
CviAII CATG 2 cut(s) 98, 191
CviQI GTAC 3 cut(s) 78, 392, 483
DinI GGCGCC 2 cut(s) 166, 300
DpnI GATC 4 cut(s) 111, 245, 274, 341
DpnII GATC 4 cut(s) 109, 243, 272, 339
DraIII CACNNNGTG 1 cut(s) 448
EciI GGCGGA 3 cut(s) 143, 239, 629
Eco130I CCWWGG 1 cut(s) 355
Eco47I GGWCC 2 cut(s) 138, 488
Eco88I CYCGRG 1 cut(s) 525
EcoRI GAATTC 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 355
EgeI GGCGCC 2 cut(s) 166, 300
EheI GGCGCC 2 cut(s) 166, 300
ErhI CCWWGG 1 cut(s) 355
Esp3I CGTCTC 1 cut(s) 551
FaeI CATG 2 cut(s) 101, 194
FaiI YATR 8 cut(s) 37, 45, 99, 192, 368, 384, 401, 765
FatI CATG 2 cut(s) 97, 190
Fnu4HI GCNGC 5 cut(s) 188, 349, 361, 380, 712
Fsp4HI GCNGC 5 cut(s) 188, 349, 361, 380, 712
FspBI CTAG 1 cut(s) 102
GlaI GCGC 5 cut(s) 166, 300, 352, 457, 599
GluI GCNGC 5 cut(s) 188, 349, 361, 380, 712
HaeII RGCGCY 3 cut(s) 168, 302, 354
HaeIII GGCC 1 cut(s) 437
HapII CCGG 4 cut(s) 168, 302, 486, 541
HgaI GACGC 2 cut(s) 193, 533
HhaI GCGC 5 cut(s) 167, 301, 353, 458, 600
Hin1I GRCGYC 3 cut(s) 165, 299, 544
Hin1II CATG 2 cut(s) 101, 194
Hin6I GCGC 5 cut(s) 165, 299, 351, 456, 598
HinP1I GCGC 5 cut(s) 165, 299, 351, 456, 598
HinfI GANTC 4 cut(s) 65, 220, 230, 508
HpaII CCGG 4 cut(s) 168, 302, 486, 541
HphI GGTGA 5 cut(s) 98, 143, 267, 277, 688
Hpy166II GTNNAC 1 cut(s) 394
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 2 cut(s) 554, 570
Hpy8I GTNNAC 1 cut(s) 394
HpyAV CCTTC 3 cut(s) 427, 616, 673
HpyCH4III ACNGT 2 cut(s) 448, 482
HpyF10VI GCNNNNNNNGC 7 cut(s) 124, 162, 258, 296, 357, 369, 606
Hsp92I GRCGYC 3 cut(s) 165, 299, 544
Hsp92II CATG 2 cut(s) 101, 194
HspAI GCGC 5 cut(s) 165, 299, 351, 456, 598
KasI GGCGCC 2 cut(s) 164, 298
Kzo9I GATC 4 cut(s) 109, 243, 272, 339
LpnPI CCDG 6 cut(s) 181, 315, 475, 499, 554, 690
Lsp1109I GCAGC 2 cut(s) 360, 372
LweI GCATC 1 cut(s) 637
MaeI CTAG 1 cut(s) 102
MaeIII GTNAC 3 cut(s) 86, 181, 316
MalI GATC 4 cut(s) 111, 245, 274, 341
MboI GATC 4 cut(s) 109, 243, 272, 339
MboII GAAGA 3 cut(s) 238, 698, 701
MluCI AATT 3 cut(s) 7, 208, 385
Mly113I GGCGCC 2 cut(s) 165, 299
MlyI GAGTC 1 cut(s) 502
MseI TTAA 1 cut(s) 408
MslI CAYNNNNRTG 1 cut(s) 719
MspI CCGG 4 cut(s) 168, 302, 486, 541
MvnI CGCG 3 cut(s) 187, 571, 600
MwoI GCNNNNNNNGC 7 cut(s) 124, 162, 258, 296, 357, 369, 606
NarI GGCGCC 2 cut(s) 165, 299
NdeII GATC 4 cut(s) 109, 243, 272, 339
NheI GCTAGC 1 cut(s) 101
NlaIII CATG 2 cut(s) 101, 194
NlaIV GGNNCC 2 cut(s) 166, 300
NmuCI GTSAC 3 cut(s) 86, 181, 316
NruI TCGCGA 1 cut(s) 571
NspV TTCGAA 1 cut(s) 729
PfeI GAWTC 3 cut(s) 65, 220, 230
PkrI GCNGC 5 cut(s) 189, 350, 362, 381, 713
PleI GAGTC 1 cut(s) 502
PluTI GGCGCC 2 cut(s) 168, 302
PpsI GAGTC 1 cut(s) 502
PshAI GACNNNNGTC 2 cut(s) 326, 493
PspN4I GGNNCC 2 cut(s) 166, 300
PspPI GGNCC 2 cut(s) 138, 488
RruI TCGCGA 1 cut(s) 571
RsaI GTAC 3 cut(s) 79, 393, 484
RsaNI GTAC 3 cut(s) 78, 392, 483
RseI CAYNNNNRTG 1 cut(s) 719
Rsr2I CGGWCCG 1 cut(s) 488
RsrII CGGWCCG 1 cut(s) 488
SaqAI TTAA 1 cut(s) 408
SatI GCNGC 5 cut(s) 188, 349, 361, 380, 712
Sau3AI GATC 4 cut(s) 109, 243, 272, 339
Sau96I GGNCC 2 cut(s) 138, 488
SchI GAGTC 1 cut(s) 502
SetI ASST 7 cut(s) 133, 267, 365, 419, 497, 656, 706
SfaNI GCATC 1 cut(s) 637
SfoI GGCGCC 2 cut(s) 166, 300
SfuI TTCGAA 1 cut(s) 729
SinI GGWCC 2 cut(s) 138, 488
SmiMI CAYNNNNRTG 1 cut(s) 719
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 3 cut(s) 7, 208, 385
SsiI CCGC 8 cut(s) 154, 187, 250, 288, 379, 614, 711, 719
SspDI GGCGCC 2 cut(s) 164, 298
SspI AATATT 1 cut(s) 200
SspMI CTAG 1 cut(s) 102
StyI CCWWGG 1 cut(s) 355
TaaI ACNGT 2 cut(s) 448, 482
TaqI TCGA 4 cut(s) 212, 476, 555, 729
TaqII GACCGA 1 cut(s) 505
TasI AATT 3 cut(s) 7, 208, 385
TauI GCSGC 3 cut(s) 190, 382, 714
TfiI GAWTC 3 cut(s) 65, 220, 230
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TseFI GTSAC 3 cut(s) 86, 181, 316
TseI GCWGC 2 cut(s) 348, 360
Tsp45I GTSAC 3 cut(s) 86, 181, 316
TspDTI ATGAA 2 cut(s) 228, 524
TspGWI ACGGA 2 cut(s) 379, 607
VpaK11BI GGWCC 2 cut(s) 138, 488
XapI RAATTY 2 cut(s) 7, 208
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.