Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0009737

Physical Location & Seq

Genomic Coordinates Forward (+)

45429174 .. 45432800

Gene Structure 3627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG242200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGTGTCTTGCGCCTCCCTTATCATCTTCTCGAGCAGTGCCCAGACGGAGGTCGGTGACGACGACTCAAGGATGAAAGACTCGAGATTTTCATTCTCCGGCATCTCTTTCTCAATGACGGCGCATTGCCGAGTGAGGGAGGGGCAGCAGCTGCTGCTGCTCTCAAGGTTGTACTCATTGCATATAAACTGTGGTGTGAGAGCAACCACCGTTGGAGACATCAAATTCGAAGATGATACAGATCTTGGAGGTGGAACAAAATTTGTTGATGACTACATAGCAAATAATGTATCGACACTTGGAATGGAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

104

Amino Acids

11.33

Weight (kDa)

4.74

Isoelectric Point (pI)

31.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009737)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0159391 RchiOBHm_Chr3g0487301
rosa_laevigata	RLG00000011507 RLG00000029402
rosa_roxburghii	Rroxscaffold_4G00312630 Rroxscaffold_7G00166790 Rroxscaffold_7G00169590 Rroxscaffold_7G00206080
rosa_rugosa	Rorug06G0002000
rosa_samantha	Rh1AG200100 Rh1AG205000 Rh1AG242200 Rh1CG185000 Rh2BG555400 Rh3AG249400 Rh4AG107400 Rh4CG107100 Rh6AG218000 Rh6DG091600 Rh7CG262100 Rh7DG252700
rosa_wichuraiana	Rw1G021230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	224, 260
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	2 cut(s)	49, 136
AluBI	AGCT	2 cut(s)	151, 312
AluI	AGCT	2 cut(s)	151, 312
Alw26I	GTCTC	1 cut(s)	210
AlwNI	CAGNNNCTG	2 cut(s)	151, 154
Ama87I	CYCGRG	2 cut(s)	31, 82
ApeKI	GCWGC	5 cut(s)	145, 148, 151, 154, 157
ApoI	RAATTY	2 cut(s)	224, 260
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AspLEI	GCGC	2 cut(s)	14, 124
AsuHPI	GGTGA	1 cut(s)	68
AsuII	TTCGAA	1 cut(s)	228
AvaI	CYCGRG	2 cut(s)	31, 82
BaeGI	GKGCMC	1 cut(s)	43
BbvI	GCAGC	5 cut(s)	138, 141, 144, 157, 160
BceAI	ACGGC	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	210
BglII	AGATCT	1 cut(s)	241
BisI	GCNGC	5 cut(s)	146, 149, 152, 155, 158
BlsI	GCNGC	5 cut(s)	147, 150, 153, 156, 159
BmeT110I	CYCGRG	2 cut(s)	31, 82
BmsI	GCATC	1 cut(s)	111
BoxI	GACNNNNGTC	1 cut(s)	50
Bpu14I	TTCGAA	1 cut(s)	228
BpuEI	CTTGAG	2 cut(s)	52, 148
BsaBI	GATNNNNATC	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 136
Bse3DI	GCAATG	2 cut(s)	124, 176
Bse8I	GATNNNNATC	1 cut(s)	240
BseGI	GGATG	1 cut(s)	78
BseJI	GATNNNNATC	1 cut(s)	240
BseLI	CCNNNNNNNGG	2 cut(s)	49, 136
BseMI	GCAATG	2 cut(s)	124, 176
BseSI	GKGCMC	1 cut(s)	43
BseXI	GCAGC	5 cut(s)	138, 141, 144, 157, 160
BsiHKCI	CYCGRG	2 cut(s)	31, 82
BsiSI	CCGG	1 cut(s)	99
BslI	CCNNNNNNNGG	2 cut(s)	49, 136
BsmAI	GTCTC	1 cut(s)	210
BsoBI	CYCGRG	2 cut(s)	31, 82
Bsp119I	TTCGAA	1 cut(s)	228
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp143I	GATC	1 cut(s)	241
BspT104I	TTCGAA	1 cut(s)	228
BsrDI	GCAATG	2 cut(s)	124, 176
BssMI	GATC	1 cut(s)	241
Bst4CI	ACNGT	2 cut(s)	191, 211
BstAPI	GCANNNNNTGC	2 cut(s)	151, 154
BstBI	TTCGAA	1 cut(s)	228
BstF5I	GGATG	1 cut(s)	78
BstHHI	GCGC	2 cut(s)	14, 124
BstKTI	GATC	1 cut(s)	244
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 154, 157
BstPAI	GACNNNNGTC	1 cut(s)	50
BstSLI	GKGCMC	1 cut(s)	43
BstV1I	GCAGC	5 cut(s)	138, 141, 144, 157, 160
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BtsCI	GGATG	1 cut(s)	78
BtsI	GCAGTG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	43
CaiI	CAGNNNCTG	2 cut(s)	151, 154
CfoI	GCGC	2 cut(s)	14, 124
Csp6I	GTAC	1 cut(s)	172
CviJI	RGCY	2 cut(s)	151, 312
CviKI_1	RGCY	2 cut(s)	151, 312
CviQI	GTAC	1 cut(s)	172
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
Eco88I	CYCGRG	2 cut(s)	31, 82
FaiI	YATR	3 cut(s)	183, 185, 278
Fnu4HI	GCNGC	5 cut(s)	146, 149, 152, 155, 158
FokI	GGATG	1 cut(s)	85
Fsp4HI	GCNGC	5 cut(s)	146, 149, 152, 155, 158
GlaI	GCGC	2 cut(s)	13, 123
GluI	GCNGC	5 cut(s)	146, 149, 152, 155, 158
HapII	CCGG	1 cut(s)	99
HhaI	GCGC	2 cut(s)	14, 124
Hin6I	GCGC	2 cut(s)	12, 122
HinP1I	GCGC	2 cut(s)	12, 122
HinfI	GANTC	2 cut(s)	65, 80
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	1 cut(s)	68
Hpy188III	TCNNGA	2 cut(s)	31, 84
Hpy99I	CGWCG	1 cut(s)	65
HpyCH4III	ACNGT	2 cut(s)	191, 211
HpyCH4V	TGCA	1 cut(s)	181
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 154, 157
HspAI	GCGC	2 cut(s)	12, 122
Kzo9I	GATC	1 cut(s)	241
LpnPI	CCDG	2 cut(s)	56, 112
Lsp1109I	GCAGC	5 cut(s)	138, 141, 144, 157, 160
LweI	GCATC	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MboII	GAAGA	2 cut(s)	19, 242
MflI	RGATCY	1 cut(s)	241
MhlI	GDGCHC	1 cut(s)	43
MluCI	AATT	2 cut(s)	224, 260
MlyI	GAGTC	2 cut(s)	59, 74
MmeI	TCCRAC	1 cut(s)	193
MnlI	CCTC	5 cut(s)	25, 43, 129, 133, 242
MspA1I	CMGCKG	1 cut(s)	151
MspI	CCGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	3 cut(s)	151, 154, 157
NdeII	GATC	1 cut(s)	241
NmeAIII	GCCGAG	1 cut(s)	155
NmuCI	GTSAC	1 cut(s)	56
NspV	TTCGAA	1 cut(s)	228
PaeR7I	CTCGAG	2 cut(s)	31, 82
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PkrI	GCNGC	5 cut(s)	147, 150, 153, 156, 159
PleI	GAGTC	2 cut(s)	59, 74
PpsI	GAGTC	2 cut(s)	59, 74
PshAI	GACNNNNGTC	1 cut(s)	50
PstNI	CAGNNNCTG	2 cut(s)	151, 154
PsuI	RGATCY	1 cut(s)	241
PvuII	CAGCTG	1 cut(s)	151
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
SatI	GCNGC	5 cut(s)	146, 149, 152, 155, 158
Sau3AI	GATC	1 cut(s)	241
SchI	GAGTC	2 cut(s)	59, 74
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	5 cut(s)	54, 153, 170, 253, 314
SfaNI	GCATC	1 cut(s)	111
Sfr274I	CTCGAG	2 cut(s)	31, 82
SfuI	TTCGAA	1 cut(s)	228
SlaI	CTCGAG	2 cut(s)	31, 82
SmlI	CTYRAG	4 cut(s)	31, 67, 82, 163
SmoI	CTYRAG	4 cut(s)	31, 67, 82, 163
Sse9I	AATT	2 cut(s)	224, 260
TaaI	ACNGT	2 cut(s)	191, 211
TaqI	TCGA	4 cut(s)	32, 83, 228, 293
TasI	AATT	2 cut(s)	224, 260
TatI	WGTACW	1 cut(s)	171
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	5 cut(s)	145, 148, 151, 154, 157
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	2 cut(s)	81, 89
TspGWI	ACGGA	1 cut(s)	62
TspRI	CASTG	1 cut(s)	43
XapI	RAATTY	2 cut(s)	224, 260
XhoI	CTCGAG	2 cut(s)	31, 82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.