Rroxscaffold_5G00383330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0011618
Physical Location & Seq
Reverse (-)
62946266 .. 62954284
8019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00383330.1

Sequence Viewer

Length: 390 bp
ATGGCCATGGTAAACCGTGAATCGAATCGTCGGACTTCAAAGTCGTTGACGGTGTCGGCGATGGAGGAGGTTAGCATCGACTTTTCACATGATATGGATCAAGAATATGAGAAAAATCGCAGGAGAATGAACCCACCAAGCTTTCAATCATCGTTCACCGGCAAGAACTTGTGCGAGGAGTTTTGTGTGGAACGGGAGGTGGAGGAAGGGTATAGAAGACAAAGCGATCTAAAGCTGTGTGTTATAGATTGTGGAGCACCACATCACGTGCGCAGCATATCCATTCTCCTACCTTTTCATTCACCACCACATGATCTTCATAACCGAACAAAACCCTCATCTCTTCTATATACGTATTCATCTCAGCCTCTTCTCTCGAGAGAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.97

Weight (kDa)

6.59

Isoelectric Point (pI)

69.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 40
Acc16I TGCGCA 1 cut(s) 272
AclWI GGATC 1 cut(s) 105
AcoI YGGCCR 1 cut(s) 3
AcvI CACGTG 1 cut(s) 268
AgsI TTSAA 2 cut(s) 39, 146
AluBI AGCT 2 cut(s) 141, 235
AluI AGCT 2 cut(s) 141, 235
Alw21I GWGCWC 1 cut(s) 259
AlwI GGATC 1 cut(s) 105
Ama87I CYCGRG 1 cut(s) 376
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 273
AspLEI GCGC 1 cut(s) 273
AsuHPI GGTGA 2 cut(s) 148, 294
AvaI CYCGRG 1 cut(s) 376
BalI TGGCCA 1 cut(s) 5
BbrPI CACGTG 1 cut(s) 268
BbsI GAAGAC 1 cut(s) 223
Bbv12I GWGCWC 1 cut(s) 259
BbvI GCAGC 1 cut(s) 285
BccI CCATC 1 cut(s) 55
BisI GCNGC 1 cut(s) 274
BlsI GCNGC 1 cut(s) 275
BmeT110I CYCGRG 1 cut(s) 376
BmsI GCATC 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 223
BsaAI YACGTR 2 cut(s) 268, 354
BsaBI GATNNNNATC 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 6
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bse118I RCCGGY 1 cut(s) 158
Bse8I GATNNNNATC 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 6
BseJI GATNNNNATC 1 cut(s) 96
BseMII CTCAG 1 cut(s) 377
BseRI GAGGAG 2 cut(s) 80, 191
BseXI GCAGC 1 cut(s) 285
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 259
BsiHKCI CYCGRG 1 cut(s) 376
BsiSI CCGG 1 cut(s) 159
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 376
Bsp1286I GDGCHC 1 cut(s) 259
Bsp143I GATC 3 cut(s) 97, 226, 313
Bsp19I CCATGG 1 cut(s) 6
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 376
BspPI GGATC 1 cut(s) 105
BsrFI RCCGGY 1 cut(s) 158
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 3 cut(s) 97, 226, 313
BssT1I CCWWGG 1 cut(s) 6
Bst4CI ACNGT 2 cut(s) 17, 52
Bst6I CTCTTC 2 cut(s) 348, 375
BstBAI YACGTR 2 cut(s) 268, 354
BstDEI CTNAG 1 cut(s) 363
BstDSI CCRYGG 1 cut(s) 6
BstHHI GCGC 1 cut(s) 273
BstKTI GATC 3 cut(s) 100, 229, 316
BstMBI GATC 3 cut(s) 97, 226, 313
BstSNI TACGTA 1 cut(s) 354
BstV1I GCAGC 1 cut(s) 285
BstV2I GAAGAC 1 cut(s) 223
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 6
BtgZI GCGATG 1 cut(s) 74
CfoI GCGC 1 cut(s) 273
Cfr10I RCCGGY 1 cut(s) 158
CviAII CATG 3 cut(s) 7, 89, 311
CviJI RGCY 4 cut(s) 5, 141, 235, 367
CviKI_1 RGCY 4 cut(s) 5, 141, 235, 367
DdeI CTNAG 1 cut(s) 363
DpnI GATC 3 cut(s) 99, 228, 315
DpnII GATC 3 cut(s) 97, 226, 313
DrdI GACNNNNNNGTC 1 cut(s) 40
DseDI GACNNNNNNGTC 1 cut(s) 40
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 348, 375
EarI CTCTTC 2 cut(s) 348, 375
Eco105I TACGTA 1 cut(s) 354
Eco130I CCWWGG 1 cut(s) 6
Eco72I CACGTG 1 cut(s) 268
Eco88I CYCGRG 1 cut(s) 376
EcoT14I CCWWGG 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 3 cut(s) 10, 92, 314
FatI CATG 3 cut(s) 6, 88, 310
Fnu4HI GCNGC 1 cut(s) 274
Fsp4HI GCNGC 1 cut(s) 274
FspI TGCGCA 1 cut(s) 272
GlaI GCGC 1 cut(s) 272
GluI GCNGC 1 cut(s) 274
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 159
HhaI GCGC 1 cut(s) 273
Hin1II CATG 3 cut(s) 10, 92, 314
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HindIII AAGCTT 1 cut(s) 139
HinfI GANTC 2 cut(s) 20, 25
HpaII CCGG 1 cut(s) 159
HphI GGTGA 2 cut(s) 148, 294
Hpy166II GTNNAC 3 cut(s) 13, 48, 156
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 3 cut(s) 101, 376, 378
Hpy8I GTNNAC 3 cut(s) 13, 48, 156
Hpy99I CGWCG 1 cut(s) 33
HpyAV CCTTC 1 cut(s) 200
HpyCH4III ACNGT 2 cut(s) 17, 52
HpyCH4IV ACGT 2 cut(s) 267, 353
HpyF3I CTNAG 1 cut(s) 363
HpySE526I ACGT 2 cut(s) 267, 353
Hsp92II CATG 3 cut(s) 10, 92, 314
HspAI GCGC 1 cut(s) 271
Kzo9I GATC 3 cut(s) 97, 226, 313
LmnI GCTCC 1 cut(s) 254
LpnPI CCDG 2 cut(s) 106, 172
Lsp1109I GCAGC 1 cut(s) 285
LweI GCATC 1 cut(s) 84
MaeII ACGT 2 cut(s) 267, 353
MalI GATC 3 cut(s) 99, 228, 315
MboI GATC 3 cut(s) 97, 226, 313
MboII GAAGA 4 cut(s) 228, 308, 335, 362
MhlI GDGCHC 1 cut(s) 259
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 11
MnlI CCTC 7 cut(s) 58, 61, 169, 190, 196, 346, 378
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 159
NcoI CCATGG 1 cut(s) 6
NdeII GATC 3 cut(s) 97, 226, 313
NlaIII CATG 3 cut(s) 10, 92, 314
NsbI TGCGCA 1 cut(s) 272
PaeR7I CTCGAG 1 cut(s) 376
PcsI WCGNNNNNNNCGW 1 cut(s) 56
PfeI GAWTC 2 cut(s) 20, 25
PflFI GACNNNGTC 1 cut(s) 52
PkrI GCNGC 1 cut(s) 275
PmaCI CACGTG 1 cut(s) 268
PmlI CACGTG 1 cut(s) 268
Ppu21I YACGTR 2 cut(s) 268, 354
PspCI CACGTG 1 cut(s) 268
PsyI GACNNNGTC 1 cut(s) 52
SatI GCNGC 1 cut(s) 274
Sau3AI GATC 3 cut(s) 97, 226, 313
SduI GDGCHC 1 cut(s) 259
SetI ASST 7 cut(s) 72, 143, 201, 237, 270, 295, 356
SfaNI GCATC 1 cut(s) 84
Sfr274I CTCGAG 1 cut(s) 376
SlaI CTCGAG 1 cut(s) 376
SmlI CTYRAG 1 cut(s) 376
SmoI CTYRAG 1 cut(s) 376
SnaBI TACGTA 1 cut(s) 354
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 2 cut(s) 17, 52
TaiI ACGT 2 cut(s) 270, 356
TaqI TCGA 3 cut(s) 23, 78, 377
TfiI GAWTC 2 cut(s) 20, 25
TseI GCWGC 1 cut(s) 273
TspDTI ATGAA 4 cut(s) 143, 287, 308, 348
Tth111I GACNNNGTC 1 cut(s) 52
XhoI CTCGAG 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.