Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0011618

Physical Location & Seq

Genomic Coordinates Forward (+)

58064626 .. 58068755

Gene Structure 4130 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG359500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGAGGTTAGCATGAGCTTTTCACATGATATGGATGGTGAATATGAGAAACTTTGCAGGAGAATGAACCCACCAAGGGTTGTAATTGATAATGAAGCCAGCAAGAATGCCACGGTGATAAGGGTTGATAGTGCTAACAAACTTGGAATACTTCTAGAAGTTGTACAAATACTCACTGATCTTAACCTTATTGTAACCAAAGCGTACATATCTTCGGATGGTGGCTGGTTCATGGATGTTTTTAATGTCACTGATCAAGATGGAAACAAGGTTACAGATGAAGGGGTTTTGGACTATATACGAAAGTCTCTTGGCCCTGAGTCTTGCTTTGCATCTTCCATGAGATCTGTTGGTGTTATACAATCAATGGACCATACTACACTTGAGCTAAGCGGAACCGACAGACCAGGATTACTATCTGAAGTGAGCCGTGTGCTTGCCATTCTTAAATGCAATGTAGTGGGTGCGCAAGTGTGGACGCACAACACAAGGGCTGCATCTGTGATGCACATTACCGATGAGGAGACAGGGTTGGCTATCACTGATCCCGAGAGGTTAGCTAGTATTAAGAAATCAGTATGCAATGTACTTAAGGGCAGCATCAAATCTAAGGGGTCAAGGACTGTTGTCTCTCATACGGGCACACACCCTGAAAGAAGGCTACACCAGATGATGTTTGCAGATAGGGATTATGACCGAGTTAAAGATGAGAGTGTCTTGGATGACAAGCAAAGACCAGATGTGAATGTTGTTAATTGGTATGACAAGGACTACTCAGTGGTTACTATTCGTAGTAAAGATAGGCCAAAGCTTCTCTTCGATACAGTTTGCACTTTGACAGACATGCAGTATGTGGTTTATCATGCAAATATTGATGCTGAGGGGCCTGAAGCTTATCAGGAATACTATATCAGGCATATAGATGGATCTCCTGTGAAATCAGATGCAGAGAGACAGAGAGTGATACAATGCCTTGAAGCAGCTATTGAGAGAAGAGTATCTGAGGTAAATGGACTATTGTATCTCACATTTTTTGTTTGTCTGATTCTGTTTTGGGAAGTAATCTTCCAAAGGGAACCCAAAGTATTCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005911 GO:0006355 GO:0006464 GO:0006807 GO:0006808 GO:0007154 GO:0007584 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009719 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016597 GO:0018175 GO:0018177 GO:0019219 GO:0019222 GO:0019538 GO:0030054 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031406 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0036094 GO:0036211 GO:0042221 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0055044 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090293 GO:1901564 GO:1901698 GO:1901699 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT ACT_6

Protein Analysis

364

Amino Acids

41.21

Weight (kDa)

5.47

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACT	PF01842	38 - 90	1.7e-07	ACT domain
ACT	PF01842	126 - 176	2.1e-08	ACT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011618)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0043691
rosa_laevigata	RLG00000000589
rosa_roxburghii	Rroxscaffold_5G00383330
rosa_rugosa	Rorug04G0423600
rosa_samantha	Rh1CG091800 Rh2AG376600 Rh4CG263600 Rh4DG359500 Rh5AG051000 Rh5BG050200 Rh5BG299400 Rh5CG058800 Rh5DG308300 Rh6AG052400 Rh6CG526700 Rh7AG099100 Rh7CG102400 Rh7CG428200 Rh7DG100900
rosa_wichuraiana	Rw1G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	468
AciI	CCGC	1 cut(s)	393
AclWI	GGATC	2 cut(s)	539, 934
AcuI	CTGAAG	2 cut(s)	441, 909
AfaI	GTAC	3 cut(s)	165, 206, 588
AfiI	CCNNNNNNNGG	1 cut(s)	76
AflII	CTTAAG	1 cut(s)	590
AgsI	TTSAA	1 cut(s)	977
AjnI	CCWGG	1 cut(s)	406
AluBI	AGCT	6 cut(s)	18, 388, 560, 811, 893, 983
AluI	AGCT	6 cut(s)	18, 388, 560, 811, 893, 983
Alw26I	GTCTC	4 cut(s)	312, 518, 634, 946
AlwI	GGATC	2 cut(s)	539, 934
Ama87I	CYCGRG	1 cut(s)	548
AoxI	GGCC	3 cut(s)	313, 803, 884
ApeKI	GCWGC	3 cut(s)	494, 597, 980
AspLEI	GCGC	1 cut(s)	469
AspS9I	GGNCC	3 cut(s)	314, 370, 884
AsuHPI	GGTGA	2 cut(s)	50, 127
AvaI	CYCGRG	1 cut(s)	548
AvaII	GGWCC	1 cut(s)	370
BaeGI	GKGCMC	1 cut(s)	644
BaeI	ACNNNNGTAYC	2 cut(s)	1004, 1037
BbvCI	CCTCAGC	1 cut(s)	879
BbvI	GCAGC	3 cut(s)	481, 609, 992
BccI	CCATC	4 cut(s)	29, 212, 254, 917
BceAI	ACGGC	1 cut(s)	414
BciT130I	CCWGG	1 cut(s)	408
BclI	TGATCA	1 cut(s)	253
BcoDI	GTCTC	4 cut(s)	312, 518, 634, 946
BfaI	CTAG	2 cut(s)	155, 561
BfrI	CTTAAG	1 cut(s)	590
BglII	AGATCT	1 cut(s)	344
BisI	GCNGC	3 cut(s)	495, 598, 981
BlpI	GCTNAGC	1 cut(s)	389
BlsI	GCNGC	3 cut(s)	496, 599, 982
Bme1390I	CCNGG	1 cut(s)	408
Bme18I	GGWCC	1 cut(s)	370
BmeT110I	CYCGRG	1 cut(s)	548
BmgT120I	GGNCC	3 cut(s)	314, 370, 884
BmiI	GGNNCC	3 cut(s)	397, 885, 1077
BmrFI	CCNGG	1 cut(s)	408
BmsI	GCATC	6 cut(s)	341, 495, 506, 609, 865, 934
BoxI	GACNNNNGTC	1 cut(s)	626
Bpu10I	CCTNAGC	1 cut(s)	879
Bpu1102I	GCTNAGC	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	404
BsaBI	GATNNNNATC	1 cut(s)	415
BsaJI	CCNNGG	2 cut(s)	74, 111
BsaXI	ACNNNNNCTCC	2 cut(s)	515, 545
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse3DI	GCAATG	2 cut(s)	460, 589
Bse8I	GATNNNNATC	1 cut(s)	415
BseBI	CCWGG	1 cut(s)	408
BseDI	CCNNGG	2 cut(s)	74, 111
BseGI	GGATG	4 cut(s)	40, 223, 241, 727
BseJI	GATNNNNATC	1 cut(s)	415
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMI	GCAATG	2 cut(s)	460, 589
BseMII	CTCAG	4 cut(s)	309, 789, 870, 993
BseRI	GAGGAG	1 cut(s)	536
BseSI	GKGCMC	1 cut(s)	644
BseXI	GCAGC	3 cut(s)	481, 609, 992
BshFI	GGCC	3 cut(s)	315, 805, 886
BsiHKCI	CYCGRG	1 cut(s)	548
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	4 cut(s)	312, 518, 634, 946
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	3 cut(s)	315, 805, 886
BsoBI	CYCGRG	1 cut(s)	548
Bsp1286I	GDGCHC	1 cut(s)	644
Bsp1407I	TGTACA	1 cut(s)	163
Bsp143I	GATC	5 cut(s)	178, 253, 344, 544, 926
Bsp1720I	GCTNAGC	1 cut(s)	389
BspACI	CCGC	1 cut(s)	393
BspANI	GGCC	3 cut(s)	315, 805, 886
BspCNI	CTCAG	4 cut(s)	310, 788, 871, 994
BspLI	GGNNCC	3 cut(s)	397, 885, 1077
BspPI	GGATC	2 cut(s)	539, 934
BspTI	CTTAAG	1 cut(s)	590
BsrDI	GCAATG	2 cut(s)	460, 589
BsrGI	TGTACA	1 cut(s)	163
BssECI	CCNNGG	2 cut(s)	74, 111
BssMI	GATC	5 cut(s)	178, 253, 344, 544, 926
BssT1I	CCWWGG	1 cut(s)	74
Bst2UI	CCWGG	1 cut(s)	408
Bst4CI	ACNGT	3 cut(s)	115, 625, 826
Bst6I	CTCTTC	2 cut(s)	821, 988
BstAFI	CTTAAG	1 cut(s)	590
BstAUI	TGTACA	1 cut(s)	163
BstC8I	GCNNGC	2 cut(s)	100, 438
BstDEI	CTNAG	6 cut(s)	318, 389, 609, 775, 879, 1002
BstDSI	CCRYGG	1 cut(s)	111
BstF5I	GGATG	4 cut(s)	40, 223, 241, 727
BstHHI	GCGC	1 cut(s)	469
BstKTI	GATC	5 cut(s)	181, 256, 347, 547, 929
BstMAI	GTCTC	4 cut(s)	312, 518, 634, 946
BstMBI	GATC	5 cut(s)	178, 253, 344, 544, 926
BstNI	CCWGG	1 cut(s)	408
BstNSI	RCATGY	1 cut(s)	847
BstPAI	GACNNNNGTC	1 cut(s)	626
BstSCI	CCNGG	1 cut(s)	406
BstSLI	GKGCMC	1 cut(s)	644
BstV1I	GCAGC	3 cut(s)	481, 609, 992
BstX2I	RGATCY	2 cut(s)	344, 926
BstYI	RGATCY	2 cut(s)	344, 926
BsuRI	GGCC	3 cut(s)	315, 805, 886
BtgI	CCRYGG	1 cut(s)	111
BtsCI	GGATG	4 cut(s)	40, 223, 241, 727
BtsIMutI	CAGTG	4 cut(s)	174, 249, 540, 783
Cac8I	GCNNGC	2 cut(s)	100, 438
CfoI	GCGC	1 cut(s)	469
Cfr13I	GGNCC	3 cut(s)	314, 370, 884
CseI	GACGC	1 cut(s)	487
Csp6I	GTAC	3 cut(s)	164, 205, 587
CviAII	CATG	6 cut(s)	13, 26, 232, 340, 844, 863
CviQI	GTAC	3 cut(s)	164, 205, 587
DdeI	CTNAG	6 cut(s)	318, 389, 609, 775, 879, 1002
DpnI	GATC	5 cut(s)	180, 255, 346, 546, 928
DpnII	GATC	5 cut(s)	178, 253, 344, 544, 926
Eam1104I	CTCTTC	2 cut(s)	821, 988
EarI	CTCTTC	2 cut(s)	821, 988
Eco130I	CCWWGG	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	370
Eco57I	CTGAAG	2 cut(s)	441, 909
Eco88I	CYCGRG	1 cut(s)	548
EcoO109I	RGGNCCY	1 cut(s)	884
EcoRII	CCWGG	1 cut(s)	406
EcoT14I	CCWWGG	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	74
FaeI	CATG	6 cut(s)	16, 29, 235, 343, 847, 866
FalI	AAGNNNNNCTT	2 cut(s)	800, 832
FatI	CATG	6 cut(s)	12, 25, 231, 339, 843, 862
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	3 cut(s)	495, 598, 981
FokI	GGATG	4 cut(s)	47, 230, 248, 734
Fsp4HI	GCNGC	3 cut(s)	495, 598, 981
FspBI	CTAG	2 cut(s)	155, 561
FspI	TGCGCA	1 cut(s)	468
GlaI	GCGC	1 cut(s)	468
GluI	GCNGC	3 cut(s)	495, 598, 981
HaeIII	GGCC	3 cut(s)	315, 805, 886
HgaI	GACGC	1 cut(s)	487
HhaI	GCGC	1 cut(s)	469
Hin1II	CATG	6 cut(s)	16, 29, 235, 343, 847, 866
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HindIII	AAGCTT	2 cut(s)	809, 891
HinfI	GANTC	2 cut(s)	320, 1045
HphI	GGTGA	2 cut(s)	50, 127
Hpy166II	GTNNAC	1 cut(s)	477
Hpy188I	TCNGA	5 cut(s)	217, 421, 943, 1003, 1044
Hpy188III	TCNNGA	4 cut(s)	155, 257, 548, 899
Hpy8I	GTNNAC	1 cut(s)	477
HpyAV	CCTTC	2 cut(s)	275, 651
HpyCH4III	ACNGT	3 cut(s)	115, 625, 826
HpyF3I	CTNAG	6 cut(s)	318, 389, 609, 775, 879, 1002
Hsp92II	CATG	6 cut(s)	16, 29, 235, 343, 847, 866
HspAI	GCGC	1 cut(s)	467
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	5 cut(s)	178, 253, 344, 544, 926
Lsp1109I	GCAGC	3 cut(s)	481, 609, 992
LweI	GCATC	6 cut(s)	341, 495, 506, 609, 865, 934
MaeI	CTAG	2 cut(s)	155, 561
MaeIII	GTNAC	4 cut(s)	193, 247, 271, 781
MalI	GATC	5 cut(s)	180, 255, 346, 546, 928
MboI	GATC	5 cut(s)	178, 253, 344, 544, 926
MboII	GAAGA	5 cut(s)	204, 327, 808, 1005, 1057
MflI	RGATCY	2 cut(s)	344, 926
MhlI	GDGCHC	1 cut(s)	644
MluCI	AATT	2 cut(s)	84, 754
MlyI	GAGTC	1 cut(s)	329
MnlI	CCTC	4 cut(s)	514, 546, 874, 997
MseI	TTAA	7 cut(s)	183, 243, 447, 567, 591, 702, 753
MslI	CAYNNNNRTG	1 cut(s)	921
MspCI	CTTAAG	1 cut(s)	590
MspR9I	CCNGG	1 cut(s)	408
Mva1269I	GAATGC	1 cut(s)	112
MvaI	CCWGG	1 cut(s)	408
NdeII	GATC	5 cut(s)	178, 253, 344, 544, 926
NlaIII	CATG	6 cut(s)	16, 29, 235, 343, 847, 866
NlaIV	GGNNCC	3 cut(s)	397, 885, 1077
NmuCI	GTSAC	1 cut(s)	247
NsbI	TGCGCA	1 cut(s)	468
NspI	RCATGY	1 cut(s)	847
PctI	GAATGC	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	1045
PkrI	GCNGC	3 cut(s)	496, 599, 982
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
PshAI	GACNNNNGTC	1 cut(s)	626
Psp6I	CCWGG	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	3 cut(s)	397, 885, 1077
PspPI	GGNCC	3 cut(s)	314, 370, 884
PsuI	RGATCY	2 cut(s)	344, 926
RsaI	GTAC	3 cut(s)	165, 206, 588
RsaNI	GTAC	3 cut(s)	164, 205, 587
RseI	CAYNNNNRTG	1 cut(s)	921
SaqAI	TTAA	7 cut(s)	183, 243, 447, 567, 591, 702, 753
SatI	GCNGC	3 cut(s)	495, 598, 981
Sau3AI	GATC	5 cut(s)	178, 253, 344, 544, 926
Sau96I	GGNCC	3 cut(s)	314, 370, 884
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	1 cut(s)	408
SduI	GDGCHC	1 cut(s)	644
SfaNI	GCATC	6 cut(s)	341, 495, 506, 609, 865, 934
SinI	GGWCC	1 cut(s)	370
SmiMI	CAYNNNNRTG	1 cut(s)	921
SmlI	CTYRAG	2 cut(s)	383, 590
SmoI	CTYRAG	2 cut(s)	383, 590
Sse9I	AATT	2 cut(s)	84, 754
SsiI	CCGC	1 cut(s)	393
SspI	AATATT	1 cut(s)	871
SspMI	CTAG	2 cut(s)	155, 561
StyD4I	CCNGG	1 cut(s)	406
StyI	CCWWGG	1 cut(s)	74
TaaI	ACNGT	3 cut(s)	115, 625, 826
TaqI	TCGA	1 cut(s)	819
TaqII	GACCGA	1 cut(s)	711
TasI	AATT	2 cut(s)	84, 754
TatI	WGTACW	2 cut(s)	163, 586
TfiI	GAWTC	1 cut(s)	1045
Tru1I	TTAA	7 cut(s)	183, 243, 447, 567, 591, 702, 753
Tru9I	TTAA	7 cut(s)	183, 243, 447, 567, 591, 702, 753
TscAI	CASTG	4 cut(s)	181, 256, 547, 783
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	3 cut(s)	494, 597, 980
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	5 cut(s)	80, 108, 220, 294, 1078
TspRI	CASTG	4 cut(s)	181, 256, 547, 783
Vha464I	CTTAAG	1 cut(s)	590
VpaK11BI	GGWCC	1 cut(s)	370
XbaI	TCTAGA	1 cut(s)	154
XceI	RCATGY	1 cut(s)	847
XspI	CTAG	2 cut(s)	155, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.