Rh5BG050200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
3986297 .. 3987944
1648 bp
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UTR
Exon/CDS
Intron
Rh5BG050200.1

Sequence Viewer

Length: 357 bp
ATGCGAGACAATTCTAATGTTCGCCACGGATCTGGATTTAGTCGACATGATATAGATAATGAATATGAGAAAATTTGCAGGAGAATGAACCCACCAAGCCTGCAAGAATGCTACGGTGATAAGGTTGGGCTATTGGCTGCTGACACAATTGATCAGGTGAAGTGTAAAACAATTGCTATCTGCCTGCATGAAGATCACCAAAGCCTGGTTGGATTGAAACAACAATCTTGTAGAAGTTGTGAAGTCAGACGAACAGGTTCATCTTGTTCAAAGGATGAGCAAATGCAAGCTGTCCAAACTGAATTGAACAGCATTGAAACTCGTATTCACAATCCTTTAGCATTAAGAAGCCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.36

Weight (kDa)

6.94

Isoelectric Point (pI)

69.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 205
AccI GTMKAC 1 cut(s) 43
AclWI GGATC 1 cut(s) 37
AcsI RAATTY 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 205
AgsI TTSAA 4 cut(s) 217, 270, 307, 317
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 1 cut(s) 290
AluI AGCT 1 cut(s) 290
AlwI GGATC 1 cut(s) 37
ApeKI GCWGC 1 cut(s) 137
ApoI RAATTY 1 cut(s) 72
Asp700I GAANNNNTTC 1 cut(s) 256
AsuHPI GGTGA 3 cut(s) 128, 169, 188
BbvI GCAGC 1 cut(s) 124
BciT130I CCWGG 1 cut(s) 206
BclI TGATCA 1 cut(s) 151
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
Bme1390I CCNGG 1 cut(s) 206
BmrFI CCNGG 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 25
Bsc4I CCNNNNNNNGG 1 cut(s) 205
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 25
BseGI GGATG 1 cut(s) 280
BseLI CCNNNNNNNGG 1 cut(s) 205
BseXI GCAGC 1 cut(s) 124
BslI CCNNNNNNNGG 1 cut(s) 205
BsmI GAATGC 1 cut(s) 113
Bsp143I GATC 3 cut(s) 29, 151, 193
BspPI GGATC 1 cut(s) 37
BssECI CCNNGG 1 cut(s) 25
BssMI GATC 3 cut(s) 29, 151, 193
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 1 cut(s) 116
BstC8I GCNNGC 3 cut(s) 101, 185, 288
BstDSI CCRYGG 1 cut(s) 25
BstF5I GGATG 1 cut(s) 280
BstKTI GATC 3 cut(s) 32, 154, 196
BstMBI GATC 3 cut(s) 29, 151, 193
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 124
BstX2I RGATCY 1 cut(s) 29
BstXI CCANNNNNNTGG 1 cut(s) 32
BstYI RGATCY 1 cut(s) 29
BtgI CCRYGG 1 cut(s) 25
BtsCI GGATG 1 cut(s) 280
Cac8I GCNNGC 3 cut(s) 101, 185, 288
CviAII CATG 2 cut(s) 47, 188
CviJI RGCY 6 cut(s) 99, 130, 137, 204, 290, 351
CviKI_1 RGCY 6 cut(s) 99, 130, 137, 204, 290, 351
DpnI GATC 3 cut(s) 31, 153, 195
DpnII GATC 3 cut(s) 29, 151, 193
EcoRII CCWGG 1 cut(s) 204
FaeI CATG 2 cut(s) 50, 191
FaiI YATR 4 cut(s) 48, 53, 66, 189
FatI CATG 2 cut(s) 46, 187
FbaI TGATCA 1 cut(s) 151
FblI GTMKAC 1 cut(s) 43
Fnu4HI GCNGC 1 cut(s) 138
FokI GGATG 1 cut(s) 287
Fsp4HI GCNGC 1 cut(s) 138
GluI GCNGC 1 cut(s) 138
Hin1II CATG 2 cut(s) 50, 191
HincII GTYRAC 1 cut(s) 44
HindII GTYRAC 1 cut(s) 44
HphI GGTGA 3 cut(s) 128, 169, 188
Hpy166II GTNNAC 1 cut(s) 44
Hpy188I TCNGA 1 cut(s) 248
Hpy188III TCNNGA 1 cut(s) 33
Hpy8I GTNNAC 1 cut(s) 44
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4V TGCA 4 cut(s) 78, 103, 187, 286
Hsp92II CATG 2 cut(s) 50, 191
Ksp22I TGATCA 1 cut(s) 151
Kzo9I GATC 3 cut(s) 29, 151, 193
LpnPI CCDG 8 cut(s) 18, 64, 113, 140, 191, 197, 218, 240
Lsp1109I GCAGC 1 cut(s) 124
MalI GATC 3 cut(s) 31, 153, 195
MboI GATC 3 cut(s) 29, 151, 193
MboII GAAGA 1 cut(s) 203
MfeI CAATTG 2 cut(s) 147, 171
MflI RGATCY 1 cut(s) 29
MluCI AATT 5 cut(s) 10, 72, 147, 171, 302
MmeI TCCRAC 1 cut(s) 190
MroXI GAANNNNTTC 1 cut(s) 256
MseI TTAA 1 cut(s) 344
MspR9I CCNGG 1 cut(s) 206
MunI CAATTG 2 cut(s) 147, 171
Mva1269I GAATGC 1 cut(s) 113
MvaI CCWGG 1 cut(s) 206
NdeII GATC 3 cut(s) 29, 151, 193
NlaIII CATG 2 cut(s) 50, 191
PctI GAATGC 1 cut(s) 113
PdmI GAANNNNTTC 1 cut(s) 256
PflMI CCANNNNNTGG 1 cut(s) 205
PkrI GCNGC 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PsuI RGATCY 1 cut(s) 29
SalI GTCGAC 1 cut(s) 42
SaqAI TTAA 1 cut(s) 344
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 3 cut(s) 29, 151, 193
ScrFI CCNGG 1 cut(s) 206
SetI ASST 4 cut(s) 126, 159, 259, 292
Sse9I AATT 5 cut(s) 10, 72, 147, 171, 302
StyD4I CCNGG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 116
TaqI TCGA 1 cut(s) 43
TasI AATT 5 cut(s) 10, 72, 147, 171, 302
Tru1I TTAA 1 cut(s) 344
Tru9I TTAA 1 cut(s) 344
TseI GCWGC 1 cut(s) 137
TspDTI ATGAA 4 cut(s) 75, 101, 204, 249
TspGWI ACGGA 1 cut(s) 42
Van91I CCANNNNNTGG 1 cut(s) 205
XapI RAATTY 1 cut(s) 72
XcmI CCANNNNNNNNNTGG 1 cut(s) 206
XmiI GTMKAC 1 cut(s) 43
XmnI GAANNNNTTC 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.