Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0011618

Physical Location & Seq

Genomic Coordinates Reverse (-)

8374529 .. 8393772

Gene Structure 19244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG100900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAGGAGAGATAGCAAGCAGAATCTGGTCGATCTTTGGAGAGCGATGAGGAGCCACGGCGGTCTGGGCAGAGCTGCGACGGGCTGCGAACTGAAGAACCCGATCGACGACGAGGAGAGCGACTGCGTTCTGGGTAGAGCTGTGACGGGCTACGAACTGAAGAGCCCGATCGACGACGAGGAGCGACGACGGTCCATCGCCGAGCTTCTTTGCAGGCTGAAGAAGGGGAAAGGCTTCAAAATCGATTGGGTCGAGCTGCCTATAGTTCTAATGTTGGCCACAGATCTAGATTTAGTTGAGGTTAGCATGAACTTTTCACATGATATGGATCATGAATATGAGAAAATTTGCAGGAGAATGAACCCACCAAGCCTGGATGGATTGAAACAACAATCTAATTTAAAATATGGTGTAGAAATTGTGAAGTCAGATGAACAGATGGCAAATATGATGAAGGCTTTACCAGTGCAGGCCAAGATCCCTGCCTCTGGAAAGCCAACATTATACAAAGGCTTTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005911 GO:0006355 GO:0006464 GO:0006807 GO:0006808 GO:0007154 GO:0007584 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009719 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016597 GO:0018175 GO:0018177 GO:0019219 GO:0019222 GO:0019538 GO:0030054 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031406 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0036094 GO:0036211 GO:0042221 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0055044 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090293 GO:1901564 GO:1901698 GO:1901699 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT ACT_6

Protein Analysis

173

Amino Acids

19.58

Weight (kDa)

6.83

Isoelectric Point (pI)

37.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011618)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0043691
rosa_laevigata	RLG00000000589
rosa_roxburghii	Rroxscaffold_5G00383330
rosa_rugosa	Rorug04G0423600
rosa_samantha	Rh1CG091800 Rh2AG376600 Rh4CG263600 Rh4DG359500 Rh5AG051000 Rh5BG050200 Rh5BG299400 Rh5CG058800 Rh5DG308300 Rh6AG052400 Rh6CG526700 Rh7AG099100 Rh7CG102400 Rh7CG428200 Rh7DG100900
rosa_wichuraiana	Rw1G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	60
AclWI	GGATC	2 cut(s)	336, 472
AcoI	YGGCCR	1 cut(s)	276
AcsI	RAATTY	1 cut(s)	345
AcuI	CTGAAG	3 cut(s)	113, 179, 239
AfiI	CCNNNNNNNGG	1 cut(s)	488
AgsI	TTSAA	2 cut(s)	238, 385
AjnI	CCWGG	1 cut(s)	372
AluBI	AGCT	4 cut(s)	74, 140, 205, 256
AluI	AGCT	4 cut(s)	74, 140, 205, 256
AlwI	GGATC	2 cut(s)	336, 472
AlwNI	CAGNNNCTG	1 cut(s)	25
AoxI	GGCC	2 cut(s)	276, 471
ApeKI	GCWGC	3 cut(s)	74, 84, 256
ApoI	RAATTY	1 cut(s)	345
Asp700I	GAANNNNTTC	1 cut(s)	233
AspS9I	GGNCC	1 cut(s)	192
AvaII	GGWCC	1 cut(s)	192
BalI	TGGCCA	1 cut(s)	278
BanII	GRGCYC	1 cut(s)	167
BbvI	GCAGC	3 cut(s)	61, 71, 243
BccI	CCATC	3 cut(s)	203, 371, 433
BceAI	ACGGC	1 cut(s)	73
BciT130I	CCWGG	1 cut(s)	374
BfaI	CTAG	1 cut(s)	287
BfmI	CTRYAG	1 cut(s)	261
BglII	AGATCT	1 cut(s)	283
BisI	GCNGC	3 cut(s)	75, 85, 257
BlsI	GCNGC	3 cut(s)	76, 86, 258
Bme1390I	CCNGG	1 cut(s)	374
Bme18I	GGWCC	1 cut(s)	192
BmgT120I	GGNCC	1 cut(s)	192
BmiI	GGNNCC	1 cut(s)	53
BmrFI	CCNGG	1 cut(s)	374
BoxI	GACNNNNGTC	1 cut(s)	190
Bsa29I	ATCGAT	1 cut(s)	243
BsaBI	GATNNNNATC	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	1 cut(s)	488
Bse1I	ACTGG	1 cut(s)	464
Bse8I	GATNNNNATC	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	374
BseCI	ATCGAT	1 cut(s)	243
BseDI	CCNNGG	1 cut(s)	55
BseGI	GGATG	1 cut(s)	382
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	488
BseNI	ACTGG	1 cut(s)	464
BseRI	GAGGAG	4 cut(s)	19, 64, 128, 194
BseXI	GCAGC	3 cut(s)	61, 71, 243
BsgI	GTGCAG	1 cut(s)	488
Bsh1285I	CGRYCG	2 cut(s)	105, 171
BshFI	GGCC	2 cut(s)	278, 473
BshVI	ATCGAT	1 cut(s)	243
BsiEI	CGRYCG	2 cut(s)	105, 171
BslI	CCNNNNNNNGG	1 cut(s)	488
BsnI	GGCC	2 cut(s)	278, 473
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	6 cut(s)	31, 102, 168, 283, 328, 477
BspACI	CCGC	1 cut(s)	60
BspANI	GGCC	2 cut(s)	278, 473
BspDI	ATCGAT	1 cut(s)	243
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	1 cut(s)	53
BspPI	GGATC	2 cut(s)	336, 472
BspQI	GCTCTTC	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	464
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	6 cut(s)	31, 102, 168, 283, 328, 477
Bst2UI	CCWGG	1 cut(s)	374
Bst4CI	ACNGT	1 cut(s)	192
Bst6I	CTCTTC	1 cut(s)	155
BstC8I	GCNNGC	3 cut(s)	17, 215, 471
BstDSI	CCRYGG	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	382
BstKTI	GATC	6 cut(s)	34, 105, 171, 286, 331, 480
BstMBI	GATC	6 cut(s)	31, 102, 168, 283, 328, 477
BstMCI	CGRYCG	2 cut(s)	105, 171
BstMWI	GCNNNNNNNGC	1 cut(s)	66
BstNI	CCWGG	1 cut(s)	374
BstPAI	GACNNNNGTC	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	372
BstSFI	CTRYAG	1 cut(s)	261
BstV1I	GCAGC	3 cut(s)	61, 71, 243
BstX2I	RGATCY	2 cut(s)	283, 477
BstYI	RGATCY	2 cut(s)	283, 477
Bsu15I	ATCGAT	1 cut(s)	243
BsuRI	GGCC	2 cut(s)	278, 473
BsuTUI	ATCGAT	1 cut(s)	243
BtgI	CCRYGG	1 cut(s)	55
BtgZI	GCGATG	2 cut(s)	59, 181
BtsCI	GGATG	1 cut(s)	382
BtsIMutI	CAGTG	1 cut(s)	471
Cac8I	GCNNGC	3 cut(s)	17, 215, 471
CaiI	CAGNNNCTG	1 cut(s)	25
CciI	TCATGA	1 cut(s)	331
Cfr13I	GGNCC	1 cut(s)	192
ClaI	ATCGAT	1 cut(s)	243
CviAII	CATG	3 cut(s)	307, 320, 332
DpnI	GATC	6 cut(s)	33, 104, 170, 285, 330, 479
DpnII	GATC	6 cut(s)	31, 102, 168, 283, 328, 477
DraI	TTTAAA	1 cut(s)	402
EaeI	YGGCCR	1 cut(s)	276
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	167
Eco47I	GGWCC	1 cut(s)	192
Eco57I	CTGAAG	3 cut(s)	113, 179, 239
EcoRII	CCWGG	1 cut(s)	372
EcoT38I	GRGCYC	1 cut(s)	167
FaeI	CATG	3 cut(s)	310, 323, 335
FaiI	YATR	9 cut(s)	263, 308, 321, 326, 333, 339, 408, 449, 505
FatI	CATG	3 cut(s)	306, 319, 331
Fnu4HI	GCNGC	3 cut(s)	75, 85, 257
FokI	GGATG	1 cut(s)	389
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	3 cut(s)	75, 85, 257
FspBI	CTAG	1 cut(s)	287
GluI	GCNGC	3 cut(s)	75, 85, 257
HaeIII	GGCC	2 cut(s)	278, 473
Hin1II	CATG	3 cut(s)	310, 323, 335
HinfI	GANTC	1 cut(s)	22
Hpy188I	TCNGA	1 cut(s)	430
Hpy188III	TCNNGA	3 cut(s)	287, 332, 489
Hpy99I	CGWCG	7 cut(s)	82, 110, 113, 176, 179, 189, 192
HpyAV	CCTTC	2 cut(s)	217, 448
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4V	TGCA	3 cut(s)	213, 351, 469
HpyF10VI	GCNNNNNNNGC	1 cut(s)	66
Hsp92II	CATG	3 cut(s)	310, 323, 335
Kzo9I	GATC	6 cut(s)	31, 102, 168, 283, 328, 477
LguI	GCTCTTC	1 cut(s)	155
LmnI	GCTCC	2 cut(s)	51, 181
Lsp1109I	GCAGC	3 cut(s)	61, 71, 243
MaeI	CTAG	1 cut(s)	287
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	6 cut(s)	33, 104, 170, 285, 330, 479
MboI	GATC	6 cut(s)	31, 102, 168, 283, 328, 477
MboII	GAAGA	3 cut(s)	106, 172, 232
MflI	RGATCY	2 cut(s)	283, 477
MhlI	GDGCHC	1 cut(s)	167
MlsI	TGGCCA	1 cut(s)	278
MluCI	AATT	3 cut(s)	345, 397, 417
MluNI	TGGCCA	1 cut(s)	278
MnlI	CCTC	5 cut(s)	42, 106, 172, 292, 496
Mox20I	TGGCCA	1 cut(s)	278
MroXI	GAANNNNTTC	1 cut(s)	233
MscI	TGGCCA	1 cut(s)	278
MseI	TTAA	1 cut(s)	401
MslI	CAYNNNNRTG	1 cut(s)	336
Msp20I	TGGCCA	1 cut(s)	278
MspR9I	CCNGG	1 cut(s)	374
MvaI	CCWGG	1 cut(s)	374
MwoI	GCNNNNNNNGC	1 cut(s)	66
NdeII	GATC	6 cut(s)	31, 102, 168, 283, 328, 477
NlaIII	CATG	3 cut(s)	310, 323, 335
NlaIV	GGNNCC	1 cut(s)	53
NmeAIII	GCCGAG	1 cut(s)	226
NmuCI	GTSAC	1 cut(s)	142
PagI	TCATGA	1 cut(s)	331
PciSI	GCTCTTC	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	2 cut(s)	117, 249
PdmI	GAANNNNTTC	1 cut(s)	233
PfeI	GAWTC	1 cut(s)	22
PkrI	GCNGC	3 cut(s)	76, 86, 258
Ple19I	CGATCG	2 cut(s)	105, 171
PshAI	GACNNNNGTC	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	53
PspPI	GGNCC	1 cut(s)	192
PstNI	CAGNNNCTG	1 cut(s)	25
PsuI	RGATCY	2 cut(s)	283, 477
PvuI	CGATCG	2 cut(s)	105, 171
RseI	CAYNNNNRTG	1 cut(s)	336
SapI	GCTCTTC	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	401
SatI	GCNGC	3 cut(s)	75, 85, 257
Sau3AI	GATC	6 cut(s)	31, 102, 168, 283, 328, 477
Sau96I	GGNCC	1 cut(s)	192
ScrFI	CCNGG	1 cut(s)	374
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	6 cut(s)	76, 142, 207, 258, 303, 521
SfcI	CTRYAG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	192
SmiMI	CAYNNNNRTG	1 cut(s)	336
Sse9I	AATT	3 cut(s)	345, 397, 417
SsiI	CCGC	1 cut(s)	60
SspMI	CTAG	1 cut(s)	287
StyD4I	CCNGG	1 cut(s)	372
TaaI	ACNGT	1 cut(s)	192
TaqI	TCGA	5 cut(s)	30, 105, 171, 243, 252
TasI	AATT	3 cut(s)	345, 397, 417
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	1 cut(s)	401
Tru9I	TTAA	1 cut(s)	401
TscAI	CASTG	1 cut(s)	471
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	3 cut(s)	74, 84, 256
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	5 cut(s)	323, 348, 374, 447, 467
TspRI	CASTG	1 cut(s)	471
VpaK11BI	GGWCC	1 cut(s)	192
XapI	RAATTY	1 cut(s)	345
XbaI	TCTAGA	1 cut(s)	286
XmnI	GAANNNNTTC	1 cut(s)	233
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.